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ProteomicsMass spectrometry-based proteomics of inner ear
To determine whether scISOr-seq isoforms are translated into proteins, we extracted protein samples from the organ of Corti and identified using Mass Spectrometry (MS)-based proteomics.
ORGANISM(S): Mus musculus (Mouse) 
2023-04-23 | PXD031062 | Pride
Inner ear  cochlear 
ProteomicsGlobal landscape of protein phosphorylation during plant regeneration initiation in cotton (Gossypium hirsutum L.)
Phosphorylation is one of the most common post-translational modifications and is central to many cellular signaling events; however, little is currently known about the phosphorylation landscape during somatic embryogenesis (SE) for plant regeneration. Here, we systematically analyzed the phosphopr...
ORGANISM(S): Gossypium hirsutum 
2025-03-18 | PXD061812 | Pride
Cotton (gossypium hirsutum l.)  phosphoproteomics  embryogenic differentiation  plant regeneration initiation 
TranscriptomicsA global analysis of QTLs for expression variations in rice flag leaf at heading date
Analyses of QTLs for expression levels (eQTLs) of the genes reveal genetic relationship between expression variation and the regulator, thus unlocking the information for identifying the regulatory network. In this study, we used Affymetrix GeneChip Rice Genome Array to analyze eQTLs in rice flag le...
ORGANISM(S): Oryza sativa 
2014-02-05 | E-GEOD-49020 | biostudies-arrayexpress
MetabolomicsMetabolomic analysis of alfalfa (Medicago sativa L.) root-symbiotic rhizobia responses under alkali stress
Alkaline salts (e.g., NaHCO3 and Na2CO3) causes more severe morphological and physiological damage to plants than neutral salts (e.g., NaCl and Na2SO4) due to differences in pH. The mechanism by which plants respond to alkali stress is not fully understood, especially in plants having symbotic relat...
2018-07-27 | MTBLS481 | MetaboLights
ProteomicsProteome of mouse brain and liver tissues
LC-MS/MS analysis for protein quantification of mouse brain and liver tissues
ORGANISM(S): Mus musculus (Mouse) 
2021-05-18 | PXD025201 | Pride
Brain Mouse Liver 
TranscriptomicsActivation of STAT6 by STING Is Critical for Antiviral Innate Immunity
Analysis of the transcriptional response of HEK293 or HEK293-STAT6 stable cell lines to poly(I:C) transfection. The hypothesis tested was that poly(I:C) transfection is capable of inducing the expression of STAT6-dependent antiviral genes. mRNA isolated from HEK293 or HEK293-STAT6 stable cell lines ...
ORGANISM(S): Homo sapiens 
2011-11-21 | E-GEOD-26435 | biostudies-arrayexpress
TranscriptomicsA global analysis of QTLs for expression variations in rice shoot at early seedling stage
Analyses of QTLs for expression levels (eQTLs) of the genes reveal genetic relationship between expression variation and the regulator, thus unlocking the information for identifying the regulatory network. Oligo-nucleotide expression microarrays hybridized with RNA can simultaneously provide data f...
ORGANISM(S): Oryza sativa Indica Group 
2011-06-24 | E-GEOD-22564 | biostudies-arrayexpress
ProteomicsThe Comprehensive Mouse Retina Proteome
A comprehensive mouse retina proteome including six development stages (E13.5, E15.5, P0, P6, and P21, mixed sample).
ORGANISM(S): Mus musculus (Mouse) 
2021-07-11 | PXD023439 | Pride
Retina Mouse Lc-ms/ms 
ProteomicsA collection of transcriptomic and proteomic datasets from sesame in response to salt stress
The proteome profiles in the shoots of two sesame genotypes with contrasting salinity tolerance were investigated under saline condition using an iTRAQ-based quantitative proteomics approach.
ORGANISM(S): Sesamum Indicum 
2019-03-08 | PXD013013 |
ProteomicsThe key clock component ZEITLUPE negatively regulates ABA signalling by degradation of the chloroplast outer membrane-localized CHLH/ABAR in Arabidopsis
Firstly, we immunoprecipitated the ZTL protein in ZTL-overexpressing plants (with a YFP tag at the C-terminus of ZTL). Then, the total proteins were identified by MS.
ORGANISM(S): Arabidopsis Thaliana 
2021-10-13 | PXD029110 |
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