An Tongtong T - OmicsDI

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Transcriptomics (2)
Metabolomics (2)
Proteomics (1)

Organisms

Saponaria officinalis (1)
Mus musculus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (2)
MetaboLights (2)
iProX (1)

Technology Type

Mass spectrometry (2)

Instrument Platform

Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2026 (2)
2025 (2)
2024 (1)

CHEBI ID

CHEBI:10303 (1)
CHEBI:10432 (1)
CHEBI:107644 (1)
CHEBI:107668 (1)
CHEBI:108585 (1)
CHEBI:109530 (1)
CHEBI:111517 (1)
CHEBI:113541 (1)
CHEBI:11909 (1)
CHEBI:125365 (1)
CHEBI:125417 (1)
CHEBI:130910 (1)
CHEBI:131510 (1)
CHEBI:131924 (1)
CHEBI:132221 (1)
CHEBI:132364 (1)
CHEBI:132609 (1)
CHEBI:132872 (1)
CHEBI:132996 (1)
CHEBI:133086 (1)
CHEBI:133094 (1)
CHEBI:133096 (1)
CHEBI:133103 (1)
CHEBI:133145 (1)
CHEBI:133176 (1)
CHEBI:133199 (1)
CHEBI:133419 (1)
CHEBI:133430 (1)
CHEBI:133477 (1)
CHEBI:133532 (1)

Metabolite Name

(+)-2-Sterpurene-6,12,15-triol (1)
(+/-)-(E)-13-Hydroxy-10-oxo-11-octadecenoic acid (1)
(+/-)-(Z)-2-(5-Tetradecenyl)cyclobutanone (1)
(+/-)-Methamidophos (1)
(-)-2,7-Dolabelladiene-6beta,10alpha,18-triol (1)
(-)-Bornyl acetate (1)
(-)-Carvomenthone (1)
(-)-Perillyl alcohol (1)
(-)-trans-3,4-Dihydro-4,8-dihydroxy-3-methyl-1H-2-benzopyran-1-one (1)
(10E,12Z)-(9S)-9-Hydroperoxyoctadeca-10,12-dienoic acid (1)
(11Z,14Z)-Eicosadienoylcarnitine (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanebutanoic acid (1)
(2-Hydroxymethyl-cyclohexyl)-acetic acid lactone (1)
(2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate (1)
(2R,3R,4R)-2-Amino-4-hydroxy-3-methylpentanoic acid (1)
(2R,5S)-2-(6-Aminopurin-9-yl)-5-(methylsulfanylmethyl)oxolane-3,4-diol (1)
(2S,6S,8S)-2,8-Dimethyl-1,7-dioxaspiro[5.5]undecane (1)
(2xi,6xi)-7-Methyl-3-methylene-1,2,6,7-octanetetrol (1)
(3S,5R,6S)-5,6-epoxy-3-hydroxy-5,6-dihydro-12'-apo-beta-caroten-12'-al (1)
(3S,6E,10E)-1,6,10,14-Phytatetraen-3-ol (1)
(3beta,9beta)-7-Drimene-3,11,12-triol (1)
(5R,6R)-3-(2-Acetamidoethylsulfanyl)-6-ethyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid (1)
(6R,8Z)-6-Hydroxy-3-oxotetradecenoic acid (1)
(6Z,10E)-hexadec-6,10-dien-8-ynoic acid (1)
(9Me,4E,8E,10E-d19:3)sphingosine (1)
(9R,13R)-1a,1b-dihomo-jasmonic acid (1)
(9R,13R)-1a,1b-dinor-10,11-dihydro-12-oxo-15-phytoenoic acid (1)
(9Z,11E,13S,15Z)-13-Hydroxyoctadeca-9,11,15-trienoic acid (1)
(E)-10-Hydroxy-2-decene-4,6-diynoic acid (1)
(E)-5,8-Megastigmadien-4-one (1)

Study type

Single nucleus RNA sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2026 (1)
2025 (1)

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Single-nucleus mRNA-sequencing reveals dynamics of lipogenic and thermogenic adipocyte populations in murine brown adipose tissue in response to cold exposure

Brown adipocyte-specific ChREBP knockout were generated by crossing mice with a floxed exon1a in the Mlxipl gene with Ucp1-Cre mice. These ChREBPflox/flox Ucp1-Cre+ (Cre+) mice and ChREBP-expressing control (Cre-) mice were studied under various conditions of BAT activation. Housing at room temperat...

ORGANISM(S): Mus musculus

2025-11-10 | E-MTAB-15819 | biostudies-arrayexpress

Discovery and validation of potential serum biomarkers for heart failure by untargeted metabolomics

Detection of biomarkers was extremely important for the early diagnosis, prognosis and therapy optimization of diseases. The purpose of this study was to investigate the differences in serum metabolites between patients with heart failure (HF) and healthy controls (HC), and to diagnose HF qualita...

2025-07-18 | MTBLS9586 | MetaboLights

RNA-seq of Saponaria officinalis tissues (leaves, stems and roots) in response to MOCK or 50 uM Methyl Jasmonate treatment at 6 and 24 hours

The experiment aims to identify genes encoding enzymes involved in the biosynthesis of triterpenoid saponins in Saponaria officinalis. RNA-seq data generated were generated from leaves, stems, and roots from 3 months old- hydroponically grown S. officinalis plants that were treated with 50 µM methyl...

ORGANISM(S): Saponaria officinalis

2026-01-15 | E-MTAB-14773 | biostudies-arrayexpress

UBA2-High Osteosarcoma Suppresses Immune Infiltration by Autophagy-Mediated MHC-I Degradation

Osteosarcoma (OS) responds poorly to immune-checkpoint blockade (ICB), and the molecular drivers of its immune-cold state remain unclear. Using multi-omics analyses, we identified an immune-cold OS subtype characterized by enrichment of protein SUMOylation and found the SUMO E1 subunit UBA2 as a key...

ORGANISM(S): Homo Sapiens

2026-01-28 | PXD073700 |

Gallbladder microbial species and host bile acids biosynthesis linked to cholesterol gallstone comparing to pigment individuals

Gallstones are crystalline deposits in the gallbladder that are traditionally classified as cholesterol, pigment or mixed stones based on their composition. Microbiota and host metabolism variances among the different types of gallstones remain largely unclear. Here, the bile and gallstone microb...

2024-03-11 | MTBLS7736 | MetaboLights

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