An Zhou Z - OmicsDI

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Unknown (20896)
Proteomics (785)
Metabolomics (177)
Transcriptomics (168)
Genomics (64)
Multiomics (3)
Other (2)

Organisms

Homo sapiens (483)
Mus musculus (206)
Oryza sativa (32)
Caenorhabditis elegans (26)
Arabidopsis thaliana (14)
Danio rerio (6)
Drosophila melanogaster (5)
Zea mays (4)
Haloarcula hispanica (3)
Oryza sativa Japonica Group (3)
Thermoanaerobacter sp. X514 (2)
Schizosaccharomyces pombe (2)
Gallus gallus (2)
Sus scrofa (2)
Spalax carmeli (1)
Lonicera japonica (1)
Acromyrmex echinatior (1)
Pseudopodoces humilis (1)
Myotis davidii (1)
Bos grunniens (1)
Colletotrichum higginsianum (1)
Brassica oleracea (1)
Deinococcus gobiensis (1)
Manihot esculenta (1)
Metarhizium acridum (1)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)
Tetrahymena thermophila (1)
Shewanella oneidensis MR-1 (1)
Arachis hypogaea (1)
Solanum habrochaites (1)

Organisms

Yersinia pestis (1)
Mus musculus (1)

Repository

pride (618)
biostudies-arrayexpress (203)
MetaboLights (177)
iProX (135)
EGA (26)
MassIVE (25)
PAXDB (3)
PeptideAtlas (3)
jPOST (2)
ENA (2)
geo (1)
GPMDB (1)

Tissue

Cell culture (164)
Epithelial cell (56)
Liver (33)
Brain (30)
Leaf (27)
Plant cell (24)
Permanent cell line cell (18)
Hepatocyte (16)
Lung (15)
Whole body (15)
Kidney (14)
Root (14)
Testis (14)
Blood (12)
Blood plasma (11)
Macrophage (11)
Heart (10)
Blood cell (9)
Colon (9)
Skin (8)
Blood serum (7)
Embryonic stem cell (7)
Fibroblast (7)
T cell (7)
Embryo (6)
HeLa cell (6)
Stem cell (6)
Monocyte (5)
Early embryonic cell (4)
Others (3)

Disease

Disease free (26)
Breast cancer (16)
Prostate adenocarcinoma (12)
Acute leukemia (11)
Colon cancer (10)
Type 2 diabetes mellitus (6)
Alzheimer's disease (5)
Brain cancer (5)
Cardiovascular system disease (5)
Cervix carcinoma (5)
Liver cancer (5)
Hepatocellular carcinoma (4)
Mixed disorder as reaction to stress (4)
Avian influenza (3)
Glioblastoma (3)
Influenza (3)
Wounds and Injuries (3)
Acute T cell leukemia (2)
COVID-19 (2)
Cholangiocarcinoma (2)
Chronic kidney disease (2)
Diffuse gastric cancer (2)
Gastric adenocarcinoma (2)
Head and neck squamous cell carcinoma (2)
Malignant neoplasm of ovary (2)
Metabolic dysfunction-associated steatotic liver disease (2)
Myopia (2)
Non-small cell lung carcinoma (2)
Salmonella infectious disease (2)
Not Available (1)

Technology Type

Mass Spectrometry (618)
Shotgun proteomics (305)
Mass spectrometry (133)
Bottom-up proteomics (93)
Affinity purification coupled with mass spectrometry proteomics (62)
Data-dependent acquisition (54)
Gel-based experiment (46)
Mass spectrometry assay (40)
Top-down proteomics (33)
Data-independent acquisition (27)
SWATH MS (19)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
Illumina 15K (8)
Proteogenomics (8)
SRM/MRM (8)
Affinity proteomics (4)
DiaPASEF (4)
HDMSE (4)
NMR spectroscopy (3)
All-ion fragmentation (3)
MSE (3)
Mass spectrometry imaging (3)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
NMR spectroscopy assay (1)
Metaproteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (66)
Liquid Chromatography MS - negative - reverse phase (60)
Liquid Chromatography MS - positive - hilic (21)
Liquid Chromatography MS - negative - hilic (19)
Liquid Chromatography MS - negative - reverse-phase (17)
Liquid Chromatography MS - positive - reverse-phase (16)
Liquid Chromatography MS - alternating - hilic (10)
Gas Chromatography MS - positive (7)
Liquid Chromatography MS - (7)
Liquid Chromatography MS - alternating - reverse phase (7)
Orbitrap Fusion Lumos (6)
LTQ Orbitrap Elite (6)
Q Exactive (6)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (5)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (5)
Liquid Chromatography MS - negative (5)
Liquid Chromatography MS - positive (5)
LTQ Orbitrap Velos (3)
HiSeq X Ten (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
Orbitrap Eclipse (2)
Orbitrap Exploris 480 (2)
Illumina HiSeq 1000 (1)
Instrument (1)
6550 iFunnel Q-TOF LC/MS (1)
Exactive Plus (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Q Exactive HF (1)
TimsTOF (1)

Publication Date

2022 (153)
2024 (135)
2023 (134)
2025 (127)
2026 (123)
2021 (81)
2020 (63)
2019 (53)
2011 (43)
2014 (41)
2018 (37)
2013 (36)
2015 (31)
2017 (28)
2016 (25)
2010 (22)
2012 (14)
2009 (8)
2008 (7)
2007 (3)
2006 (1)

UNIPROT ID/AC

1433B_SOYBN (2)
1433D_SOYBN (2)
6DCS_SOYBN (2)
A1YZE0_SOYBN (2)
A5I866_SOYBN (2)
A5JUQ4_SOYBN (2)
A5JVZ7_SOYBN (2)
A5Z2K3_SOYBN (2)
A7BIC9_SOYBN (2)
A7X657_SOYBN (2)
A7XZJ7_SOYBN (2)
A9CPA7_SOYBN (2)
A9QNE4_SOYBN (2)
ACCD_SOYBN (2)
ACT3_SOYBN (2)
AKR1_SOYBN (2)
AMYB_SOYBN (2)
AOX3_SOYBN (2)
ATPB_SOYBN (2)
ATPE_SOYBN (2)
ATPF_SOYBN (2)
B0M195_SOYBN (2)
B0M196_SOYBN (2)
B0M1A0_SOYBN (2)
B0M1A4_SOYBN (2)
B0M1A6_SOYBN (2)
B0M1A9_SOYBN (2)
B0M1B1_SOYBN (2)
B1ACD3_SOYBN (2)
B1ACD5_SOYBN (2)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17368 (47)
CHEBI:15741 (45)
CHEBI:16708 (45)
CHEBI:17596 (45)
CHEBI:16704 (44)
CHEBI:16750 (43)
CHEBI:17568 (43)
CHEBI:30769 (43)
CHEBI:7916 (40)
CHEBI:16335 (38)
CHEBI:17154 (38)
CHEBI:16235 (37)
CHEBI:17895 (37)
CHEBI:15891 (36)
CHEBI:15354 (34)
CHEBI:16737 (34)
CHEBI:16919 (34)
CHEBI:16467 (33)
CHEBI:17562 (33)
CHEBI:17821 (33)
CHEBI:30915 (33)
CHEBI:16040 (32)
CHEBI:16450 (32)
CHEBI:17748 (32)
CHEBI:32816 (32)
CHEBI:15756 (31)
CHEBI:16566 (31)
CHEBI:17351 (31)
CHEBI:17509 (31)
CHEBI:28044 (31)

Metabolite Name

Hypoxanthine (46)
Adenine (42)
Uridine (42)
Inosine (40)
Uracil (40)
Guanosine (39)
Xanthine (38)
Creatinine (35)
Creatine (34)
Guanine (34)
Taurine (34)
Uric acid (33)
Adenosine (31)
L-Tyrosine (31)
Xanthosine (30)
Citric acid (29)
L-Arginine (28)
Riboflavin (28)
Cytidine (27)
Pantothenic acid (27)
Choline (26)
L-Histidine (26)
Palmitic acid (26)
Thymine (26)
Azelaic acid (25)
Cytosine (25)
L-Phenylalanine (25)
Suberic acid (25)
Betaine (24)
Dodecanedioic acid (24)

First Public Date

2020 (1)
2014 (1)

Classification

bacteria (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
6x(2)H labeled dimethylated L-arginine (1)
N6 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (91)
RNA-seq of coding RNA (38)
ChIP-seq (34)
RNA-seq of non coding RNA (12)
Other (6)
Unknown experiment type (5)
Methylation profiling by array (4)
ChIP-chip by tiling array (3)
Transcription profiling by tiling array (2)
Comparative genomic hybridization by array (2)
Methylation profiling by high throughput sequencing (2)
Animal - High-throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (3295)
2022 (2975)
2023 (2786)
2024 (2703)
2021 (2267)
2020 (1534)
2019 (1080)
2018 (922)
2017 (755)
2016 (600)
2026 (489)
2015 (487)
2014 (361)
2013 (241)
2012 (167)
2011 (145)
2010 (98)
2008 (60)
2009 (58)
2007 (27)
2006 (16)
2005 (11)
2004 (6)
2003 (6)
2002 (5)
1998 (2)
2001 (1)
2000 (1)
1997 (1)

Lab affiliation

USDA-ARS (8)
Zhejiang University (5)
Cedars-Sinai Medical Center (4)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (4)
Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China. (4)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (4)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (4)
UCSF (4)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (3)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (3)
State Key Laboratory for Development and Utilization of Forest Food Resources, Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China (3)
The Second Hospital of Dalian Medical University (3)
University of Science and Technology of China (3)
Wuhan University (3)
Yazhouwan National Laboratory, Sanya 572024, China (3)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China (2)
China agricultural university, preventive veterinary medicine (2)
Clinical Laboratory of BGI Health, BGI-Shenzhen, Shenzhen 518083, China (2)
College of Agronomy and Biotechnology, China Agricultural University, Beijing, China (2)
College of Life Sciences, Hunan Normal University (2)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China (2)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (2)
Department of Molecular Pharmacology and Therapeutics Columbia University Irving Medical Center (2)
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. (2)

Tags

xref:PubMed:36635563 (1)
xref:PubMed:21345178 (1)
pathogen:bacterium (1)
pathogen (1)

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Cell Membrane Remodeling Mediates Polymyxin B Resistance in Klebsiella pneumoniae: An Integrated Proteomics and Metabolomics Study

Polymyxin B (PB) is introduced into the clinic as the last-line therapy against carbapenem-resistant Klebsiella pneumoniae (CRKP). Unfortunately, increased resistance to PB in Klebsiella pneumoniae (K. pneumoniae) has threatened global health. Resistance of K. pneumoniae ...

2022-03-04 | MTBLS4132 | MetaboLights

Comparison of lipidome profiles of Caenorhabditis elegans—results from an inter-laboratory ring trial

Introduction

Lipidomic profiling allows 100s if not 1000s of lipids in a sample to be detected and quantified. Modern lipidomics techniques are ultra-sensitive assays that enable the discovery of novel biomarkers in a variety of fields and provide new insight in mechanistic investigations. D...

2022-02-21 | MTBLS2016 | MetaboLights

Acetone stress response in Desulfovibrio vulgaris

Desulfovibrio vulgaris has been studied extensively for its potential in the bioremediation of heavy metals and radionuclides. Hydrocarbons and solvents, as frequent environmental co-contaminants, have been reported to inhibit microbial activities and thereby pose a limitation on bioremediation effi...

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2009-08-08 | E-GEOD-5569 | biostudies-arrayexpress

Cell wide response to low oxygen exposure in Desulfovibrio vulgaris Hildenborough

We investigated the effects of low level oxygen on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: time course, stress response Comparison of cells treated with 1000 ppm oxygen to untreated cells at 60,120,240 min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2010-06-10 | E-GEOD-7816 | biostudies-arrayexpress

Cell wide response to air exposure in Desulfovibrio vulgaris Hildenborough

We investigated the effects of air exposure on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: stress response, time course Comparison of cells treated with air to untreated cells at 0,10,30,120,240 min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2007-08-08 | E-GEOD-8196 | biostudies-arrayexpress

pH stress in Desulfovibrio vulgaris Hildenborough

Using data from microarray experiments, we investigated the effects of excess NaCl on D. vulgaris. Keywords: stress response, time course Comparison of cells treated with pH10 pH to untreated cells at times of 0,120,240,30,60 min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2007-08-31 | E-GEOD-8197 | biostudies-arrayexpress

Metabolomic Analysis Reveals an Important Role of Sphingosine 1-phosphate in the Development of HFMD due to EV-A71 Infection

Hand, foot, and mouth disease (HFMD) is a serious pediatric infectious disease that causes immeasurable physical and mental health burdens. Currently, there is a lack of information on the mechanisms of HFMD severity and early diagnosis. We performed metabolomic profiling of sera from 84 Enterovi...

2024-11-14 | MTBLS11656 | MetaboLights

Pyruvate fermentation vs Lactate-Sulfate

In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8015 | biostudies-arrayexpress

Pyruvate vs Lactate as electron donor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8071 | biostudies-arrayexpress

Thiosulfate vs Sulfate as electron acceptor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8072 | biostudies-arrayexpress

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