Ana - OmicsDI

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Unknown (1713)
Transcriptomics (1473)
Proteomics (407)
Genomics (330)
Metabolomics (60)
Models (15)
Other (4)
Genomic (3)
Multiomics (2)

Organisms

Homo sapiens (669)
Mus musculus (364)
Saccharomyces cerevisiae (75)
Rattus norvegicus (58)
Arabidopsis thaliana (57)
Danio rerio (27)
Sus scrofa (25)
Caenorhabditis elegans (23)
Drosophila melanogaster (21)
Bos taurus (19)
Gallus gallus (11)
Escherichia coli (10)
Thermus thermophilus HB8 (7)
Canis lupus familiaris (7)
Actinoplanes sp. SE50/110 (7)
Apis mellifera (6)
Campylobacter jejuni (6)
Vitis vinifera (6)
Oncorhynchus mykiss (6)
Bacillus subtilis subsp. subtilis str. 168 (5)
Streptococcus pyogenes (5)
Xylella fastidiosa (5)
Anopheles gambiae (5)
Solanum lycopersicum (5)
Oryza sativa Japonica Group (5)
Candida albicans (5)
Streptococcus pneumoniae D39 (5)
synthetic construct (5)
cellular organisms (4)
Lactococcus lactis (2)

Organisms

Mus musculus (34)
Homo sapiens (21)
Arabidopsis thaliana (10)
Shewanella sp. ANA-3 (5)
Rattus norvegicus (4)
Talaromyces marneffei PM1 (2)
Daphnia pulex (2)
Sus scrofa (2)
mouse gut metagenome (2)
Rectinema subterraneum (1)
Achromobacter marplatensis (1)
Euryale ferox (1)
Staphylococcus epidermidis RP62A (1)
Oreochromis mossambicus (1)
Phakellia ventilabrum (1)
Petunia x hybrida (1)
Thlaspi arvense (1)
Citrobacter rodentium (1)
Marchantia polymorpha (1)
fish gut metagenome (1)
Sorghum bicolor (1)
mouse metagenome (1)
Plasmodium berghei (1)
soil metagenome (1)

Repository

biostudies-arrayexpress (1501)
pride (195)
ENA (146)
EGA (128)
PAXDB (94)
MassIVE (73)
MetaboLights (48)
geo (32)
jPOST (25)
BioModels (12)
GNPS (11)
PanoramaPublic (7)
PeptideAtlas (6)
dbGaP (3)
GPMDB (3)
iProX (3)
Cell Collective (2)
EVA (1)
MetabolomicsWorkbench (1)
PMR (1)

Tissue

Cell culture (33)
Epithelial cell (18)
Blood plasma (14)
Liver (11)
Brain (8)
Colon (8)
Kidney (7)
Others (6)
Cell suspension culture (6)
Permanent cell line cell (6)
Blood serum (4)
Leaf (4)
Saliva (4)
Whole body (4)
Bone marrow (3)
Heart (3)
Spleen (3)
Blood (2)
Blood cell (2)
Culture fluid (2)
Embryonic stem cell (2)
HeLa cell (2)
Lung (2)
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Plant cell (2)
Prostate gland (2)
Skin (2)
Skin mucus (2)
Soft tissue sarcoma cell (2)
Insect tissue (1)

Disease

Colon cancer (14)
Alzheimer's disease (6)
Normal (4)
Breast cancer (4)
Not Available (3)
Colorectal cancer (3)
Reference (2)
Acute leukemia (2)
Disease free (2)
Leishmaniasis (2)
Tuberculosis (2)
Diabetes mellitus (1)
Amyloidosis (1)
Pancreatitis (1)
B-cell chronic lymphocytic leukemia (1)
No tendon xanthomas (1)
Infected (1)
Colon carcinoma (1)
IBDV infected (1)
Leiomyosarcoma (1)
N/a (1)
Adenocarcinoma (1)
Acute myeloid leukemia (1)
Amyotrophic lateral sclerosis (1)
Atypical teratoid rhabdoid tumor (1)
Brain glioblastoma multiforme (1)
Brain glioma (1)
COVID-19 (1)
Cataract (1)
Cervix carcinoma (1)

Technology Type

Mass Spectrometry (196)
Shotgun proteomics (91)
Bottom-up proteomics (55)
Mass spectrometry (38)
Data-dependent acquisition (32)
Affinity purification coupled with mass spectrometry proteomics (21)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
Gel-based experiment (8)
Data-independent acquisition (7)
Mass spectrometry assay (6)
SWATH MS (5)
Top-down proteomics (5)
NMR spectroscopy (4)
ILLUMINA, Illumina HiSeq 2000 (3)
HDMSE (3)
MSE (3)
Unknown (2)
Affinity proteomics (2)
Metaproteomics (2)
Infinium Omni2.5M (1)
Illumina ChIP-Sequencing, Illumina MBD-Sequencing, Illumina beadarray, Illumina HiSeq 2500, Illumina MiSeq, Illumina Bisulfite-Sequencing (1)
Illumina HiSeq 2500, Illumina MiSeq (1)
Illumina HiScanSQ, Illumina_Human660W-Quad_v1_A-Not supplied (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Illumina Genome Analyzer II, Affymetrix snp 6.0, Illumina Genome Analyzer IIx, GPL570, Affymetrix GeneChip Human Genome U133 plus 2.0 (1)
Illumina Infinium 1.2M (1)
Illumina HiSeq 2000 (1)
ESI (1)
All-ion fragmentation (1)
DiaPASEF (1)

Instrument Platform

Illumina HiSeq 4000 (19)
Illumina NovaSeq 6000 (18)
Illumina HiSeq 2000 (15)
Illumina HiSeq 2500 (11)
NextSeq 500 (8)
Illumina MiSeq (6)
NextSeq 2000 (5)
Illumina NovaSeq X (4)
NextSeq 550 (4)
Ion Torrent Proton (3)
HPC cluster Lobo (2)
Illumina Genome Analyzer IIx (2)
Hamamatsu Nanozoomer S60 (1)
Agilent Microarray Scanner (1)
Agilent Hybridization Oven (1)
RiboZ (1)
Trizol (Invitrogen); FastPrep (MP Biochemicals) (1)
DASGIP bioreactors (1)
Axon GenePix 4000A scanning hardware (1)
Biotech Photometer (1)
ScanArray 4000 [PerkinElmer] (1)
Agilent G2565BA (1)
AB SOLiD 4 System (1)
ScanArray Lite [PerkinElmer] (1)
GenePix 4000A [Axon Instruments] (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Axon GenePix 4000B scanning hardware (1)
Illumina MiniSeq (1)

Publication Date

2015 (272)
2013 (231)
2014 (225)
2010 (163)
2012 (151)
2020 (139)
2011 (119)
2016 (101)
2024 (82)
2021 (66)
2023 (64)
2008 (58)
2022 (54)
2025 (49)
2009 (46)
2026 (43)
2007 (36)
2017 (24)
2019 (23)
2018 (21)
2006 (13)
2005 (10)
2004 (7)
2002 (2)
2003 (1)

UNIPROT ID/AC

P25054 (1)
P04406 (1)
Q2TSD0 (1)
P24941 (1)
P14635 (1)
P06493 (1)
P38936 (1)
P41930 (1)
P22434 (1)
P06776 (1)
Q06147 (1)
Q12246 (1)
P50107 (1)
P32327 (1)
P11154 (1)
P11325 (1)
P15807 (1)
P40363 (1)
P26637 (1)
P17261 (1)
P07284 (1)
P38705 (1)
Q12068 (1)
P40459 (1)
P38169 (1)
Q99297 (1)
Q03028 (1)
P25379 (1)
P13298 (1)
P30402 (1)

ENSEMBL ID

ENSG00000170477 (5)
ENSG00000247315 (4)
ENSG00000147251 (1)

CHEBI ID

CHEBI:17234 (13)
CHEBI:422 (9)
CHEBI:16108 (7)
CHEBI:29864 (5)
CHEBI:28718 (5)
CHEBI:18367 (3)
CHEBI:16001 (3)
CHEBI:15422 (3)
CHEBI:16761 (3)
CHEBI:16908 (3)
CHEBI:15846 (3)
CHEBI:15740 (2)
CHEBI:15379 (2)
CHEBI:30089 (2)
CHEBI:15351 (2)
CHEBI:15346 (2)
CHEBI:17138 (2)
CHEBI:16236 (2)
CHEBI:15361 (2)
CHEBI:17794 (2)
CHEBI:16905 (2)
CHEBI:18021 (2)
CHEBI:15946 (2)
CHEBI:60425 (1)
CHEBI:52684 (1)
CHEBI:16221 (1)
CHEBI:33625 (1)
CHEBI:16298 (1)
CHEBI:17144 (1)
CHEBI:15500 (1)

Metabolite Name

Glutamine (9)
L-Tyrosine (9)
L-Proline (8)
Putrescine (8)
L-Tryptophan (8)
L-Valine (8)
L-Leucine (8)
L-Phenylalanine (8)
Choline (7)
Citrate (7)
Alanine (7)
Glycine (7)
Uracil (7)
L-Aspartic acid (7)
Ethanolamine (6)
Serine (6)
Proline (6)
Malate (6)
Lysine (6)
Arginine (6)
Histidine (6)
Phenylalanine (6)
Tyrosine (6)
Glucose (6)
Leucine (6)
L-Lysine (6)
L-Arginine (6)
L-Histidine (6)
Fumaric acid (6)
Spermidine (6)

First Public Date

2018 (22)
2014 (18)
2025 (15)
2023 (14)
2024 (11)
2022 (10)
2026 (9)
2021 (9)
2019 (9)
2017 (7)
2015 (7)
2013 (7)
2016 (5)
2020 (3)

Modelling Approach

Ordinary differential equation model (10)
Constraint-based model (1)

Lab affiliation

Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain (5)
Chronic Disease Programme, UFIEC, Instituto de Salud Carlos III, Majadahonda, E-28220 Madrid, Spain. (4)
Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain. (3)
Toronto General Hospital, University of Toronto, Toronto, Canada (3)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology (3)
Vice Director, Professor Novo Nordisk Foundation Center for Protein Research Proteomics Program University of Copenhagen Faculty of Health and Medical Sciences Blegdamsvej 3b DK-2200 Copenhagen Denmark (3)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K (2)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Madrid, Spain (2)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, Majadahonda, E-28220 Madrid, Spain (2)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, Majadahonda, E-28220 Madrid, Spain. (2)
Chronic Disease Programme, UFIEC, Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain (2)
Clinical and Diagnostic Immunology, Department Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium Laboratory Medicine, University Hospitals Leuven, Leuven, Belgium (2)
Department of Immunology, Interfaculty Institute for Cell Biology, Eberhard Karls University Tübingen (2)
Forschungsinstitut für Frauengesundheit Universitäts- Frauenklinik Universitätsklinikum Tübingen Germany (2)
Institute of Clinical Sciences, Department of Oncology, Lund University, Sweden (2)
The Gene Lay Institute of Immunology and Inflammation Harvard Medical School and Brigham and Women's Hospital (2)
The University of Hong Kong (2)
Toronto General Hospital Research Institute, UniversityHealth Network, Toronto, Canada Department of Medicine, Division of Nephrology, University Health Network, Toronto, Canada (2)
1. Wellcome Trust Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, UK 2. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Germany (1)
3 Univ. Grenoble Alpes, CNRS, INRAE, CEA, IRIG-LPCV, 38000 Grenoble, FranceLPCV - to be completed 4. Univ. Grenoble Alpes, CEA, INSERM, UA13 BGE, CNRS, CEA, FR2048, Grenoble, France (1)
Albert Einstein College of Medicine (1)
Albert Einstein College of Medicine Deparment of Developmental and Molecular Biology (1)
Bastounis lab, IMIT, CMFI, University of Tübingen, Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry, Technical University of Munich, Freising, Germany (1)
Bioiberica S.A.U., Av. Països Catalans 34, 08950 Esplugues de Llobregat, Barcelona, Spain (1)
Biomedicinska inst (1)
Biomolecular Mass Spectrometry and Proteomics, Utrecht Institute for Pharmaceutical Sciences and Bijvoet Centre for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
CCMAR (Center of Marine Sciences), Universidade do Algarve,Campus de Gambelas, Portugal (1)
CCMAR (Center of Marine Sciences, Universidade do Algarve,Campus de Gambelas, Portugal (1)
CENTD, Instituto Butantan (1)

IsPrivate

False (12)

Model Flag

Non Kinetic (2)

Classification

fungi (2)
protozoa (1)
bacteria (1)

Modification

2x(15)N labeled L-lysine (1)

Study type

Transcription profiling by array (957)
RNA-seq of coding RNA (215)
ChIP-seq (46)
Unknown experiment type (40)
Comparative genomic hybridization by array (40)
RNA-seq of non coding RNA (35)
Other (23)
Methylation profiling by array (23)
Transcription profiling by RT-PCR (20)
RNA-seq of coding RNA from single cells (19)
ChIP-chip by tiling array (14)
Transcription profiling by tiling array (7)
ChIP-chip by array (7)
Transcription profiling by SAGE (6)
Genotyping by array (5)
DNA-seq (4)
Proteomic profiling by array (4)
Human - Single-cell sequencing (3)
Animal - High-throughput sequencing (3)
RNAi profiling by array (3)
MicroRNA profiling by array (3)
Methylation profiling by high throughput sequencing (3)
Animal - One-color microarray (2)
Animal - Single-cell sequencing (2)
Human - High-throughput sequencing (2)
Cell line - One-color microarray (2)
Cell line - High-throughput sequencing (2)
RNA-seq of total RNA (2)
RIP-chip by array (1)
One-color microarray (1)

Release Date

2015 (311)
2022 (253)
2025 (251)
2013 (251)
2014 (246)
2024 (201)
2023 (196)
2021 (190)
2012 (177)
2010 (172)
2016 (165)
2020 (136)
2011 (131)
2019 (116)
2018 (98)
2008 (64)
2017 (59)
2026 (54)
2009 (52)
2007 (38)
2006 (15)
2005 (13)
2004 (8)
2003 (3)
2002 (3)
2000 (3)
2001 (1)

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Shewanella sp. ANA-3

Shewanella sp. ANA-3 DAP-Seq epigenomics

PRJNA757861 | ENA

Transcript structures in Shewanella sp ANA-3

5' RNASeq of mRNA from Shewanella sp ANA-3 grown aerobically in Luria-Bertani broth (LB) and defined lactate minimal medium 5'-end mRNA profiles of mid-log phase bacterial cells growing in LB or lactate medium were generated by next-generation sequencing.

ORGANISM(S): Shewanella sp. ANA-3

2013-03-21 | E-GEOD-45311 | biostudies-arrayexpress

Shewanella sp. ANA-3

PRJNA254924 | ENA

Shewanella sp. ANA-3

Transcript structures in Shewanella sp ANA-3

PRJNA193546 | ENA

Achromobacter marplatensis strain:strain ANA

Achromobacter marplatensis strain:strain ANA Genome sequencing and assembly

PRJNA86071 | ENA

Shewanella sp. ANA-3

Shewanella sp. ANA-3 transposon fitness other

PRJNA459682 | ENA

Photo-ANA enables profiling of host–bacteria protein interactions during infection

Bacterial pathogens rapidly change and adapt their proteome to cope with the environment in host cells and secret effector proteins to hijack host targets to ensure their survival and proliferation during infection. Excessive host proteins make it difficult to profile pathogens’ proteome dynamics by...

ORGANISM(S): Homo sapiens (Human)

2023-01-28 | PXD033036 | Pride

Salmonella

Transcript structures in Shewanella sp ANA-3

5' RNASeq of mRNA from Shewanella sp ANA-3 grown aerobically in Luria-Bertani broth (LB) and defined lactate minimal medium

ORGANISM(S): Shewanella sp. ANA-3

2013-03-21 | GSE45311 | GEO

Shewanella sp. ANA-3

Bacterium capable of converting arsenate to arsenite

PRJNA13905 | ENA

Transcription profiling of mouse ANA-1 macrophages infected with Chlamydia pneumoniae

This experiment is an additional experiment to GSE6688. Mouse macrophages (ANA-1 cells) were infected in vitro with C. pneumoniae with a M.O.I. of 10. Twenty two genes were significantly upregulated. Examples of the most upregulated genes in mouse macrophages after C. pneumoniae infection are serum ...

ORGANISM(S): Mus musculus

2008-06-15 | E-GEOD-6690 | biostudies-arrayexpress

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