Anaerobic digestion

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Genomics (1487)
Unknown (727)
Transcriptomics (218)
Proteomics (167)
Metabolomics (9)
Models (1)
Other (1)

Organisms

Mus musculus (19)
Homo sapiens (16)
Pseudomonas aeruginosa (9)
Escherichia coli str. K-12 substr. MG1655 (8)
Saccharomyces cerevisiae (7)
Escherichia coli (6)
Porphyromonas gingivalis (5)
Arabidopsis thaliana (5)
Clostridium acetobutylicum (4)
Apis mellifera (4)
Mycobacterium tuberculosis (4)
Salmonella enterica subsp. enterica serovar Typhimurium (4)
Clostridium perfringens str. 13 (3)
Mycobacterium tuberculosis H37Rv (3)
Yersinia pseudotuberculosis YPIII (2)
Porphyromonas gingivalis W83 (2)
Thermotoga maritima MSB8 (2)
Rhodopseudomonas palustris (2)
Shewanella oneidensis MR-1 (2)
Clostridium botulinum (2)
Aggregatibacter actinomycetemcomitans (2)
Gasterosteus aculeatus (2)
Staphylococcus epidermidis (2)
Streptomyces coelicolor A3(2) (2)
Campylobacter jejuni (2)
Geobacter sulfurreducens (2)
Streptococcus pneumoniae (2)
Bos taurus (2)
Clostridioides difficile (2)
Escherichia coli K-12 (2)

Organisms

anaerobic digester metagenome (170)
sludge metagenome (70)
bioreactor metagenome (26)
biogas fermenter metagenome (17)
bioreactor sludge metagenome (14)
wastewater metagenome (10)
activated sludge metagenome (7)
biofilm metagenome (5)
metagenome (4)
Methanothrix sp. (3)
unidentified (3)
fermentation metagenome (3)
human gut metagenome (3)
Caproiciproducens galactitolivorans (2)
microbial fuel cell metagenome (2)
lignocellulose-degrading enrichment culture (2)
uncultured prokaryote (2)
Methanothrix (2)
Moorella sp. Hama-1 (2)
coal metagenome (2)
sediment metagenome (2)
Escherichia coli (2)
Thermoplasmatales archaeon SCGC AB-539-N05 (1)
Thermoplasmatales archaeon SCGC AB-540-F20 (1)
Thermoplasmatales archaeon SCGC AB-539-C06 (1)
Clostridium sp. HV4-5-A1G (1)
Thaumarchaeota archaeon SCGC AB-539-E09 (1)
Brevundimonas sp. LPMIX5 (1)
Bacteroidaceae bacterium HV4-6-C5C (1)
sugarcane bagasse metagenome (1)

Repository

ENA (1485)
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pride (154)
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geo (6)
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Tissue

Cell culture (18)
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Blood (1)
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Culture condition:anaerobically-grown cell (1)
Dendritic cell (1)
Endospore (1)
Erythrocyte (1)
Eukaryotic cell (1)
Feces (1)
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Permanent cell line cell (1)
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Root (1)
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Stromal cell (1)

Disease

Disease free (4)
Bacterial infectious disease (1)
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Colon cancer (1)
Colorectal adenoma (1)
Crohn's disease (1)
Giardiasis (1)
Histoplasmosis (1)
Lymphoma (1)

Technology Type

Mass Spectrometry (154)
Shotgun proteomics (91)
Bottom-up proteomics (34)
Data-dependent acquisition (14)
Gel-based experiment (14)
Data-independent acquisition (12)
Metaproteomics (7)
Mass spectrometry (5)
Affinity purification coupled with mass spectrometry proteomics (4)
HDMSE (3)
Top-down proteomics (3)
NMR spectroscopy (2)
Mass spectrometry assay (2)
SWATH MS (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Sodium dodecyl sulfate polyacrylamide gel electrophoresis (1)

Instrument Platform

Illumina HiSeq 2000 (9)
Illumina HiSeq 2500 (6)
NextSeq 500 (4)
Illumina NovaSeq X (3)
Illumina HiSeq 4000 (3)
Liquid Chromatography MS - positive - reverse phase (3)
Anaerobic workstation with airlock (2)
BD GasPak 150 Jar (2)
Axon- GenePix4000B (2)
GenePix 4000B [Axon Instruments] (2)
Scanning hardware (2)
Illumina MiSeq (2)
Liquid Chromatography MS - negative - reverse phase (2)
Ultrospec 3000 (1)
HiSeq X Five (1)
Affymetrix Genechip scanner 3000 (1)
Affymetrix Genechip hybridisation oven 650 (1)
Bactron IV SHEL LAB Anaerobic (1)
GenePix 4000A [Axon Instruments] (1)
GeneQuant (1)
G2505A DNA microarray scanner [Agilent] (1)
Variable Atmosphere Incubator (1)
Illumina HiSeq 1500 (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap Velos (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Thermo Dionex UltiMate 3000 RSLC nano system (1)
TripleTOF 6600 (1)
GC-(triple quadrupole)MS, TQ8040, Shimadzu (1)

Publication Date

2021 (33)
2026 (31)
2010 (29)
2013 (27)
2014 (26)
2022 (24)
2025 (22)
2016 (22)
2015 (21)
2011 (20)
2012 (19)
2019 (16)
2018 (16)
2023 (14)
2020 (14)
2008 (14)
2024 (13)
2017 (12)
2009 (11)
2007 (9)
2006 (4)
2005 (3)

CHEBI ID

CHEBI:52742 (1)
CHEBI:9254 (1)
CHEBI:646 (1)
CHEBI:30924 (1)
CHEBI:358 (1)
CHEBI:11018 (1)
CHEBI:45866 (1)
CHEBI:10961 (1)
CHEBI:18710 (1)
CHEBI:35397 (1)
CHEBI:15193 (1)
CHEBI:15671 (1)
CHEBI:26849 (1)
CHEBI:18711 (1)
CHEBI:35398 (1)
CHEBI:43896 (1)
CHEBI:62010 (1)
CHEBI:73803 (1)
CHEBI:11835 (1)
CHEBI:17871 (1)
CHEBI:20078 (1)
CHEBI:1552 (1)
CHEBI:34008 (1)
CHEBI:138881 (1)
CHEBI:28635 (1)
CHEBI:73804 (1)
CHEBI:10245 (1)
CHEBI:42748 (1)
CHEBI:22389 (1)
CHEBI:12321 (1)

Metabolite Name

L-Phenylalanine (4)
L-leucine (3)
Taurine (3)
L-alanine (3)
L-aspartic acid (3)
Glycerophosphocholine (3)
L-Isoleucine (3)
L-Tyrosine (3)
(S)-malic acid (2)
5-oxo-L-proline (2)
N-acetyl-L-aspartic acid (2)
L-isoleucine (2)
Hypoxanthine (2)
Adenine (2)
Creatine (2)
NAD+ (2)
Tetradecanoic acid (2)
Uracil (2)
L-threonine (2)
Succinic acid (2)
Fumaric acid (2)
L-valine (2)
2-oxoglutaric acid (2)
L-asparagine (2)
L-glutamic acid (2)
L-tyrosine (2)
L-tryptophan (2)
L-phenylalanine (2)
L-glutamine (2)
L-proline (2)

IsPrivate

False (1)

First Public Date

2024 (263)
2026 (203)
2025 (194)
2023 (177)
2022 (133)
2021 (119)
2019 (86)
2020 (79)
2017 (68)
2018 (60)
2016 (43)
2015 (29)
2014 (21)
2013 (9)
2012 (1)

Classification

bacteria (7)

Modelling Approach

Metabolic network (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (145)
RNA-seq of coding RNA (39)
Comparative genomic hybridization by array (6)
High-throughput sequencing (4)
Transcription profiling by tiling array (4)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
ChIP-chip by array (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
One-color microarray (1)
RNAi profiling by array (1)
Genotyping by array (1)
Other (1)
ChIP-seq (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (87)
2025 (87)
2020 (84)
2024 (80)
2021 (73)
2018 (65)
2022 (60)
2019 (59)
2015 (51)
2016 (45)
2017 (44)
2013 (39)
2014 (35)
2010 (32)
2011 (24)
2012 (20)
2008 (15)
2009 (11)
2026 (10)
2007 (10)
2006 (9)
2005 (4)

Lab affiliation

Wageningen University (5)
Department of Biotechnology, Delft University of Technology, The Netherlands. (2)
Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg E, Denmark (2)
Laboratory for Environmental Biotechnology, Ecole polytechnique fédérale de Lausanne (EPFL), Lausanne, Switzerland (2)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (2)
Norwegian University of Life Sciences (2)
Radboud Proteomics Center, Translational Metabolic Laboratory, Department of Laboratory Medicine, Radboudumc (2)
University of Hohenheim, Institute of Animal Science, Stuttgart, Germany (2)
University of Ottawa (2)
1. School of Pharmaceutical Sciences, Faculty of Medicine, University of Ottawa, Canada. 2.Quadram Institute Bioscience, Norwich Research Park, United Kingdom (1)
128, Academia Road Sec. 2, Nankang, Taipei 115, Taiwan, IBC R712 (1)
1Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, DK-9220, Aalborg E, Denmark (1)
Agrochemistry and Biochemistry Department. University of Alicante (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Applied Biosciences and Process Engineering, Anhalt University of Applied Sciences, Microbiology, Bernburger Straße 55, 06354 Köthen, Germany (1)
BMI, Faculty of Medicine, University of Ottawa (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising (1)
Biology Department, Maynooth University (1)
Biomedical Research Center, University Hospital Hradec Kralove, Czechia (1)
Bioprocess Engeneering, IVT, Otto-von-Guericke University, Magdeburg, Germany (1)
Biotechnology, Applied Sciences, Delft University of Technology (1)
Center for Synthetic Microbiology (SYNMIKRO) Research Center and Department of Chemistry, Philipps-Universität Marburg, Karl-von-Frisch Straße 14, 35043 Marburg (1)
Cornell University Department of Microbiology (1)
Departamento de Desarrollo Biotecnológico, Instituto de Higiene, Facultad de Medicina,Universidad de la República, Montevideo, Uruguay (1)
Department of Biochemistry, Soonchunhyang University, College of Medicine, Cheonan, 31151, Republic of Korea (1)
Department of Bioclinical Sciences College of Dentistry Kuwait University Kuwait. (1)
Department of Biology, University of Naples “Federico II”, Naples, Italy (1)
Department of Biotechnology, Delft University of Technology, TUD, The Netherlands. (1)
Department of Biotechnology, Technical University Delft, Julianalaan 67. 2682 BC Delft, The Netherlands (1)
Department of Biotechnology, Yonsei University, Seoul 03722, South Korea (1)

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Inhibition of anaerobic digestion by various ammonia sources resulted in subtle differences in metabolite dynamics

The impact of ammonia on anaerobic digestion performance and microbial dynamics has been extensively studied, but the concurrent effect of anions brought by ammonium salt should not be neglected. This paper studied this effect using metabolomics and a time-course statistical framework. Metabolomi...

2024-03-01 | MTBLS7859 | MetaboLights

anaerobic digestion

PRJNA1068322 | ENA

anaerobic digestion

anaerobic digestion Metagenome

PRJNA413634 | ENA

anaerobic digestion

Archaeal community during anaerobic digestion

PRJNA916699 | ENA

Anaerobic digestion

Anaerobic digestion Raw sequence reads

PRJNA1073048 | ENA

Anaerobic digestion

Anaerobic digestion of food waste

PRJNA1032458 | ENA

Anaerobic digestion : bioaugmentation

Anaerobic digestion : bioaugmentation Genome sequencing

PRJNA1206320 | ENA

Shotgun metaproteomic profiling of biomimetic anaerobic digestion processes treating sewage sludge

Two parallel anaerobic digestion lines were designed to match a "bovid-like" digestive structure. Each of the lines consisted of two Continuous Stirred Tank Reactors placed in series and separated by an acidic treatment step. The first line was inoculated with industrial inocula whereas the second w...

ORGANISM(S): anaerobic digester metagenome

2015-08-12 | PXD002420 | Pride

ANAEROBIC DIGESTION

ANAEROBIC DIGESTION Raw sequence reads

PRJNA923490 | ENA

Linking microbial community structure and function during the anaerobic digestion of grass

In this study, microbial communities from triplicate leach-bed anaerobic bioreactors digesting grass were analysed. Each reactor comprised two microbial fractions, one immobilized on grass (biofilm) and the other in a planktonic state present in the leachate. Microbial communities from the two fract...

ORGANISM(S): anaerobic digester metagenome

2018-10-23 | PXD007956 | Pride

Anaerobic digestion metaproteomics grass

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2612 Results

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