Analytics - OmicsDI

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Unknown (10509)
Proteomics (419)
Genomics (240)
Transcriptomics (184)
Metabolomics (85)
Models (4)
Clinical (4)
Methylation profiling (1)

Organisms

Allexis (411)
Arabidopsis thaliana (411)
Entamoeba histolytica HM-1:IMSS-A (411)
Escherichia coli (411)
Homo sapiens (411)
Listeria monocytogenes (411)
Medicago truncatula (411)
Mus musculus (411)
Rattus norvegicus (411)
Saccharomyces cerevisiae (411)
Schizosaccharomyces pombe (411)
Shigella (411)
Shigella flexneri (411)
Sinorhizobium meliloti BL225C (411)
Solanum tuberosum (411)
Staphylococcus aureus (411)
Sus scrofa domesticus (411)
Homo sapiens (128)
Mus musculus (43)
Saccharomyces cerevisiae (5)
Escherichia coli (4)
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Rattus norvegicus (3)
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Macaca fascicularis (2)
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Canis lupus familiaris (1)
Danio rerio (1)
Caenorhabditis elegans (1)
cellular organisms (1)

Organisms

Homo sapiens (81)
Mus musculus (73)
Escherichia coli (3)
medical device metagenome (2)
Mycobacterium tuberculosis (2)
groundwater metagenome (2)
Canis lupus familiaris (2)
Arabidopsis thaliana (2)
Devosia sp. DBB001 (1)
Jeotgalicoccus sp. ATCC 8456 (1)
Leptospira borgpetersenii serovar Hardjo (1)
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Aegilops peregrina (1)
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rat gut metagenome (1)
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Caenorhabditis elegans (1)
Rattus norvegicus (1)
Streptococcus mutans (1)
Ovis aries (1)

Repository

pride (411)
ENA (232)
biostudies-arrayexpress (167)
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geo (23)
MassIVE (5)
BioModels (4)
EGA (3)
jPOST (2)
iProX (1)

Tissue

Cell culture (34)
Leaf (22)
Epithelial cell (18)
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Liver (12)
Lung (11)
B cell (9)
Blood plasma (8)
Cerebrospinal fluid (8)
HeLa cell (7)
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Brain (6)
Hepatocyte (6)
Root (6)
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Blood (3)
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Disease

Lung adenocarcinoma (9)
Disease free (8)
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Melanoma (5)
Breast cancer (4)
Normal (3)
Lymphoma (3)
Brain cancer (2)
Cardiovascular system disease (2)
Non-small cell lung carcinoma (2)
Obesity (2)
Alpha-1 antitrypsin deficiency (1)
Giant Cell Glioblastoma (1)
Central nervous system cancer (1)
Breast cancer and colorectal cancer survivors (1)
Colorectal cancer screening (1)
Colorectal cancer (1)
Colorectal Neoplasms (1)
Age related macular degeneration (1)
Alzheimer's disease (1)
Bardet-Biedl syndrome (1)
Bone disease (1)
COVID-19 (1)
Childhood acute lymphocytic leukemia (1)
Chronic kidney disease (1)
Cystic fibrosis (1)
Embryonal rhabdomyosarcoma (1)
Glioblastoma (1)
Influenza (1)
Limb muscle (1)

Technology Type

Mass Spectrometry (411)
Shotgun proteomics (213)
Bottom-up proteomics (78)
Mass spectrometry (75)
Data-dependent acquisition (66)
Affinity purification coupled with mass spectrometry proteomics (35)
Data-independent acquisition (21)
Top-down proteomics (20)
Gel-based experiment (13)
Mass spectrometry assay (10)
Chemical cross-linking coupled with mass spectrometry proteomics (10)
SWATH MS (10)
HDMSE (9)
SRM/MRM (6)
MSE (2)
NMR spectroscopy (1)
Affinity proteomics (1)
Glycoproteomics (1)
Mass spectrometry imaging (1)
RNA mass spectrometry (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (21)
Liquid Chromatography MS - negative - reverse phase (17)
Gas Chromatography MS - positive (12)
Liquid Chromatography MS - positive - hilic (12)
Liquid Chromatography MS - negative - hilic (10)
Gas Chromatography MS - (8)
Exactive (Thermo Scientific) (8)
Flow Injection Analysis MS - Alternating (FIA-MS (Alternating)) (5)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (5)
Liquid Chromatography MS - alternating - hilic (5)
Liquid Chromatography MS - positive - reverse-phase (5)
Liquid Chromatography MS - negative - reverse-phase (5)
Illumina NovaSeq 6000 (4)
Liquid Chromatography MS - positive - HILIC (4)
Leco Pegasus III (3)
Flow injection analysis MS - negative (3)
Flow injection analysis MS - positive (3)
Liquid Chromatography MS - negative - HILIC (3)
NextSeq 500 (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
Liquid Chromatography MS - (2)
Not applicable (1)
Illumina NovaSeq X (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)

Publication Date

2025 (109)
2023 (66)
2024 (62)
2026 (59)
2021 (58)
2010 (46)
2022 (42)
2020 (42)
2019 (42)
2011 (30)
2013 (25)
2018 (24)
2012 (22)
2017 (18)
2014 (17)
2015 (16)
2009 (12)
2016 (4)
2008 (2)
2007 (2)

CHEBI ID

CHEBI:15428 (32)
CHEBI:30769 (25)
CHEBI:28044 (24)
CHEBI:17268 (24)
CHEBI:16811 (23)
CHEBI:16958 (22)
CHEBI:17148 (22)
CHEBI:15741 (22)
CHEBI:30915 (22)
CHEBI:18257 (21)
CHEBI:17992 (20)
CHEBI:17822 (20)
CHEBI:26271 (20)
CHEBI:28300 (20)
CHEBI:27266 (20)
CHEBI:25094 (20)
CHEBI:18237 (20)
CHEBI:16865 (20)
CHEBI:16449 (20)
CHEBI:18186 (19)
CHEBI:16610 (19)
CHEBI:15891 (19)
CHEBI:18012 (19)
CHEBI:16335 (19)
CHEBI:15756 (19)
CHEBI:26986 (18)
CHEBI:24898 (18)
CHEBI:17115 (18)
CHEBI:33508 (18)
CHEBI:16414 (18)

Metabolite Name

Adenosine (15)
Putrescine (14)
Pantothenic acid (13)
Creatinine (13)
Citric acid (12)
Glyceric acid (12)
Histamine (12)
Sucrose (12)
Succinic acid (11)
Uridine (11)
Glycine (10)
Uracil (10)
Choline (10)
Taurine (10)
Fumaric acid (10)
Spermidine (10)
Hypoxanthine (10)
Threonic acid (9)
Nicotinic acid (9)
Benzoic acid (9)
Methionine (9)
Glutaric acid (9)
Cytidine (9)
L-Phenylalanine (9)
Inosine (9)
Ethanolamine (8)
Betaine (8)
Ornithine (8)
Cholic acid (8)
Gluconic acid (8)

First Public Date

2014 (81)
2021 (22)
2026 (21)
2022 (18)
2024 (17)
2025 (16)
2023 (16)
2020 (14)
2018 (8)
2016 (6)
2019 (5)
2017 (4)
2015 (3)
2013 (1)

Modelling Approach

Ordinary differential equation model (2)
Steady-state model (1)
Constraint-based model (1)

Study status

Not yet recruiting (2)
Not provided (1)
Completed (1)

Lab affiliation

Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (60)
University of Victoria (46)
iBET – Instituto de Biologia Experimental e Tecnológica, Av. da República, Oeiras, 2780-157, Portugal (14)
Farnusch Kaschani, Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (12)
Forschungszentrum Juelich GmbH ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (11)
Forschungszentrum Juelich ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (6)
Institute of Microbiology - BioCeV, Academy of Sciences of the Czech Republic (4)
Moffitt Cancer Center Tampa, FL, USA (4)
Thoracic Oncology Moffitt Cancer Center Tampa, FL, USA (4)
Associate Professor, University of Washington (3)
Department of Biomolecular Sciences, Weizmann institute of Science, Israel (3)
Department of Synthetic Chemistry & Biological Chemistry, Graduate School of Engineering, Kyoto Univ. Katsura, Kyoto 615-8510, JAPAN (3)
Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria (3)
Forschungszentrum Juelich GmbH ZEA-3 Analytics Wilhelm-Johnen-Str. D-52425 Juelich Germany (3)
Proteomics Team, Nestlé Institute of Health Sciences, Lausanne, Switzerland (3)
Research and Diagnostic Institute of Pathology, Medical University of Graz, Stiftingtalstrasse 6, 8010 Graz, Austria; Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria (3)
University of Dundee (3)
University of Edinburgh, Institute of Genetics and Molecular Medicine, Edinburgh, Scotland, United Kingdom, EH4 2XR (3)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (2)
Department of Chemistry, Clemens-Schöpf-Institute of Chemistry and Biochemistry, Technical University of Darmstadt, Peter-Grünberg-Strasse 4, 64287 Darmstadt, Germany (2)
Division of Pharmacotherapy and Experimental Therapeutics, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, USA (2)
Forschungszentrum Juelich GmbH ZEA-3 Analytics (2)
Forschungszentrum Jülich ZEA-3 Analytics (2)
Full Professor for Analytical Chemistry Institute of Chemical Technologies and Analytics TU Wien Getreidemarkt 9/E164 A-1060 Vienna Austria (2)
Full Professor for Analytical Chemistry Vienna University of Technology Institute of Chemical Technologies and Analytics Getreidemarkt 9/E164 A-1060 Vienna Austria (2)
Harvard medical school (2)
IBMM, Univ Montpellier, CNRS, ENSCM, 34095 Montpellier, France (2)
Institute of Microbiology,The Czech Academy of Sciences (2)
Kobilka Institute of Innovative Drug Discovery, School ofMedicine, The Chinese University of Hong Kong, Shenzhen, China, 518172 (2)
Pitter Huesgen Forschungszentrum Juelich ZEA-3 Analytics (2)

Keyword

Nearinfrared (1)
Artificial intelligence (1)
Perfusion (1)
Anastomosis (1)
Colorectal surgery (1)

IsPrivate

False (4)

Submitter Keywords

Manuscript Accepted (1)
Immuno-oncology (1)
Not Peer Reviewed (1)

Classification

bacteria (10)
viruses (1)
fungi (1)

Modification

N6 (4)
N6-dimethyl-L-lysine (4)
4x(15)N labeled L-arginine (2)

Study type

Comparative genomic hybridization by array (90)
ChIP-chip by tiling array (24)
Transcription profiling by array (17)
ChIP-chip by array (12)
Methylation profiling by array (12)
RNA-seq of coding RNA (3)
RNA-seq of non coding RNA (3)
Observational (2)
Interventional (2)
Two-color microarray (1)
Transcription profiling by tiling array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)
ChIP-seq (1)
DNA-seq (1)

Release Date

2022 (1652)
2025 (1611)
2023 (1421)
2024 (1339)
2021 (1267)
2020 (905)
2019 (613)
2018 (455)
2017 (300)
2016 (262)
2026 (228)
2015 (176)
2014 (124)
2013 (98)
2012 (68)
2010 (64)
2011 (53)
2009 (24)
2008 (8)
2007 (5)
2006 (2)
2003 (1)

Location

Australia (2)
Ireland (1)
Slovenia (1)
Latvia (1)
Spain (1)
Belgium (1)

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CRISPR-Analytics

CRISPR-Analytics (CRISPR-A): a platform for precise analytics and simulations for gene editing

PRJEB53901 | ENA

NEVA: Visual Analytics to Identify Fraudulent Networks.

Not available

S-EPMC7584106 | biostudies-literature

Pilot sequencing study for wastewater monitoring for SARS-CoV-2 (Biobot Analytics/Ginkgo Bioworks)

PRJNA759260 | ENA

Envisioning the future of clinical analytics: a modified Delphi process in New South Wales, Australia.

Not available

S-EPMC7650225 | biostudies-literature

Wastewater monitoring for SARS-CoV-2 across the United States (CDC/NWSS/Biobot Analytics)

PRJNA839090 | ENA

Wastewater monitoring for SARS-CoV-2 across the United States (HHS Protect/NWSS/Biobot Analytics)

PRJNA746354 | ENA

ATHENA: Augmenting Therapeutic Effectiveness through Novel Analytics

PRJNA1452998 | ENA

Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression

Targeted proteomics enables hypothesis-driven research by measuring the cellular expression of protein cohorts related by function, disease, or class after perturbation. Here, we present a pathway-centric approach and an assay builder resource for targeting entire pathways of proteins selected from ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090)

2022-08-11 | MSV000090110 | MassIVE

Biobot Analytics Wastewater Monitoring

PRJNA801677 | ENA

Characterizing Advanced Breast Cancer Heterogeneity and Treatment Resistance through Serial Biopsies and Comprehensive Analytics

PRJNA688545 | ENA

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11446 Results

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