Angiosperms - OmicsDI

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Unknown (2059)
Genomics (317)
Transcriptomics (167)
Proteomics (30)
Metabolomics (6)
Other (5)
Models (4)
Methylation profiling (4)
Genomic (1)

Organisms

Arabidopsis thaliana (70)
Zea mays (13)
Oryza sativa (10)
Oryza sativa Japonica Group (7)
Selaginella moellendorffii (6)
Saccharomyces cerevisiae (5)
Picea glauca (5)
Casuarina glauca (5)
Arabidopsis lyrata (4)
Cucumis sativus (4)
Lepidium sativum (2)
Glycine max (2)
Ricinus communis (2)
Nuphar advena (2)
Eschscholzia californica (2)
Persea americana (2)
Pinus pinaster (2)
Alnus glutinosa (2)
Cardamine sp. SIM-2007 (1)
Echinacea pallida (1)
Fusarium oxysporum (1)
Salvia sclarea (1)
Urochloa decumbens (1)
Gossypium arboreum (1)
Solanum chacoense (1)
Populus balsamifera (1)
Populus x canadensis (1)
Amborella trichopoda (1)
Ciona intestinalis (1)
Marchantia polymorpha subsp. polymorpha (1)

Organisms

Arabidopsis thaliana (21)
Equisetum hyemale (6)
Phragmites australis (6)
Zea mays (6)
Equisetum arvense (5)
Casuarina glauca (4)
Marchantia polymorpha (4)
Oryza sativa (4)
Capsella rubella (3)
Physcomitrium patens (3)
Genlisea aurea (2)
Nymphaea colorata (2)
Triphyophyllum peltatum (2)
Pinus pinaster (2)
Ranunculus penicillatus (2)
Viridiplantae (2)
Populus trichocarpa (2)
Panicum virgatum (2)
Solanum lycopersicum (2)
soil metagenome (2)
Oryza sativa Japonica Group (2)
Phylloglossum drummondii (1)
Sporobolus stapfianus (1)
Larix laricina (1)
Chimonanthus salicifolius (1)
Campanula americana (1)
Hysterium pulicare (1)
Hysterium pulicare CBS 123377 (1)
Coccinia grandis (1)
Petunia integrifolia subsp. inflata (1)

Repository

ENA (305)
biostudies-arrayexpress (112)
geo (76)
pride (23)
MetaboLights (5)
BioModels (4)
MassIVE (3)
PAXDB (3)
dbGaP (1)
GNPS (1)
iProX (1)

Tissue

Plant cell (6)
Cotyledon (2)
Leaf (2)
Pollen (2)
Protonema (2)
Seedling (2)
Callus (1)
Egg (1)
Etiolated plant tissue (1)
Flower (1)
Gametophore (1)
Gametophyte (1)
Semen (1)
Sperm (1)
Whole body (1)
Whole plant (1)
Wood (1)
Xylem (1)

Disease

Disease free (1)

Technology Type

Mass Spectrometry (23)
Shotgun proteomics (13)
Bottom-up proteomics (6)
Mass spectrometry (5)
Data-dependent acquisition (3)
Affinity proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Gel-based experiment (1)
Proteogenomics (1)

Instrument Platform

Illumina HiSeq 2000 (3)
Illumina NovaSeq 6000 (2)
Q Exactive (2)
Illumina HiSeq 1000 (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Velos (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - positive - direct infusion (1)
Liquid Chromatography MS - negative - direct infusion (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
5975C Series GC/MSD (Agilent) (1)
MS Imaging - (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2010 (22)
2011 (21)
2012 (18)
2026 (17)
2023 (15)
2014 (15)
2025 (15)
2013 (13)
2008 (13)
2024 (10)
2016 (9)
2009 (9)
2015 (8)
2007 (8)
2022 (7)
2019 (6)
2018 (5)
2021 (4)
2020 (4)
2005 (3)
2017 (3)
2006 (1)

UNIPROT ID/AC

A0A0M4JB57_TOBAC (3)
A0A0M4JJI5_TOBAC (3)
A0A0M4JNG5_TOBAC (3)
A0A0M4JST5_TOBAC (3)
A0A0M5KC92_TOBAC (3)
A0A140G1P7_TOBAC (3)
A0A140G1S2_TOBAC (3)
A0A1S3X5A3_TOBAC (3)
A0A1S3XBM4_TOBAC (3)
A0A1S3XCV6_TOBAC (3)
A0A1S3XE25_TOBAC (3)
A0A1S3XHC2_TOBAC (3)
A0A1S3XU47_TOBAC (3)
A0A1S3XU77_TOBAC (3)
A0A1S3XYI9_TOBAC (3)
A0A1S3Y4V1_TOBAC (3)
A0A1S3Y5A9_TOBAC (3)
A0A1S3Y5T4_TOBAC (3)
A0A1S3YIG1_TOBAC (3)
A0A1S3YJX7_TOBAC (3)
A0A1S3YNC4_TOBAC (3)
A0A1S3YP64_TOBAC (3)
A0A1S3YRF4_TOBAC (3)
A0A1S3Z2K5_TOBAC (3)
A0A1S3Z744_TOBAC (3)
A0A1S3ZDG6_TOBAC (3)
A0A1S3ZGD7_TOBAC (3)
A0A1S3ZJA2_TOBAC (3)
A0A1S3ZKW0_TOBAC (3)
A0A1S4A1J2_TOBAC (3)

CHEBI ID

CHEBI:4167 (2)
CHEBI:16551 (2)
CHEBI:15343 (2)
CHEBI:15422 (2)
CHEBI:16908 (2)
CHEBI:15846 (2)
CHEBI:16761 (2)
CHEBI:16526 (2)
CHEBI:30031 (2)
CHEBI:16027 (2)
CHEBI:28013 (2)
CHEBI:28602 (2)
CHEBI:17754 (2)
CHEBI:16001 (2)
CHEBI:17794 (2)
CHEBI:17835 (2)
CHEBI:16108 (2)
CHEBI:29052 (2)
CHEBI:17665 (2)
CHEBI:16084 (2)
CHEBI:18021 (2)
CHEBI:28087 (2)
CHEBI:16236 (2)
CHEBI:15361 (2)
CHEBI:146784 (1)
CHEBI:141126 (1)
CHEBI:147280 (1)
CHEBI:146782 (1)
CHEBI:147282 (1)
CHEBI:146785 (1)

Metabolite Name

Coniferaldehyde (1)
5-hydroxyconiferaldehyde (1)
8beta-epoxyangeloyloxy-9alpha-ethoxy-14-oxo-acanthospermolide (1)
Polymatin B (1)
Uvedalin (1)
Smaditerpenic acid E (1)
Uvedalin aldehyde (1)
Polymatin A (1)
Longipilin acetate (1)
Smaditerpenic acid F (1)
Pentahydroxy-methoxyflavone glycoside (1)
Enhydrin (1)
5-hydroxyferulic acid (1)
Ribitol, 5TMS derivative (1)
Arabitol, 5TMS derivative (1)
Glycerol-3-phosphate, 4TMS (1)
Alpha-Ketoglutaric acid 3TMS (1)
Alpha-Ketoglutaric acid 4TMS (1)
11.77 287 285 (1)
Isocitric lactone TMS derivative +97 (1)
Isocitric lactone 2TMS (1)
Succinic acid TMS derivative (1)
Fumaric acid-DITMS (1)
Maleic acid, diTMS (1)
Fructose 5TMS derivative (1)
Lanosterol TMS derivative (1)
Beta-Sitosterol, TMS derivative (1)
Stigmasterol, TMS derivative (1)
Alpha-Tocopherol, TMS derivative (1)
16.26 456 297 355 (1)

IsPrivate

False (4)

First Public Date

2026 (39)
2013 (38)
2023 (29)
2025 (28)
2014 (26)
2024 (25)
2022 (22)
2020 (22)
2019 (22)
2021 (16)
2017 (14)
2018 (12)
2015 (8)
2016 (4)

Modelling Approach

Ordinary differential equation model (4)

Study type

Transcription profiling by array (59)
RNA-seq of coding RNA (27)
RNA-seq of non coding RNA (11)
Transcription profiling by tiling array (4)
Comparative genomic hybridization by array (3)
ChIP-seq (2)
Methylation profiling by high throughput sequencing (2)
Translation profiling (1)
Transcription profiling by RT-PCR (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (216)
2021 (181)
2025 (180)
2023 (168)
2024 (137)
2020 (135)
2019 (135)
2017 (122)
2018 (118)
2016 (108)
2015 (102)
2014 (98)
2013 (85)
2012 (74)
2011 (60)
2010 (56)
2009 (37)
2008 (37)
2026 (24)
2007 (23)
2006 (19)
2003 (10)
2005 (9)
2004 (9)
2002 (7)
1999 (5)
2000 (4)
1998 (4)
1997 (4)
2001 (2)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (3)
EDyP (2)
Associate professer (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
C.S. Bond Life Science Center, Division of Plant Sciences and Technology, University of Missouri, Columbia, MO, United States (1)
Carpita Lab; Department of Botany & Plant Pathology, Purdue University, USA (1)
Department of Life Science, College of Life Science, National Taiwan University, Taipei, Taiwan (1)
Department of Plant Systems Biology, University of Hohenheim, 70593 Stuttgart, Germany (1)
Dept. of Molecular Biology and Radiobiology Mendel University in Brno Zemedelska 1 613 00 Brno Czech Republic (1)
Graduate School of Science and Engineering (1)
Gregor Mendel Institute of the Austrian Academy of Sciences (1)
Hangshan Univerisity (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15, 04318 Leipzig, Germany (1)
IBCH RAS (1)
Institut de biologie moleculaire des plantes, CNRS, Universite de Strasbourg, Strasbourg, France (1)
Molecular Systems Biology (1)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
The Sainsbury Laboratory (1)
University of Liège, Genetics and Physiology of Microalgae, InBios/Phytosystems research unit, 4000 Liège, Belgium (1)
University of Münster, Institute of Plant Biology and Biotechnology (IBBP), Green Biotechnology, 48143 Münster, Germany (1)

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Molecular barcoding of angiosperms in South Georgia

PRJEB88856 | ENA

Widespread natural variation of DNA methylation within angiosperms

DNA methylation is a chemical modification of DNA that can be faithfully inherited across generations in flowering plant genomes. Failure to properly maintain DNA methylation can lead to epigenetic variation and transposon reactivation. Plant genomes are dynamic, spanning large ranges in size and th...

ORGANISM(S): Ricinus communis

2016-09-02 | E-GEOD-79526 | biostudies-arrayexpress

Widespread natural variation of DNA methylation within angiosperms

PRJNA316109 | ENA

Angiosperms mitochondral Assembly

PRJNA1206543 | ENA

The root of the angiosperms revisited.

Not available

S-EPMC124492 | biostudies-literature

Evolutionary trends in the floral transcriptome: insights from one of the basalmost angiosperms, the water lily Nuphar advena (Nymphaeceae)

Current understanding of floral developmental genetics comes primarily from the core-eudicot model Arabidopsis thaliana. Here we explore the floral transcriptome of the basal angiosperm, Nuphar advena (water lily), for insights into the ancestral developmental program of flowers. Several thousand Nu...

ORGANISM(S): Nuphar advena

2011-07-19 | E-GEOD-23082 | biostudies-arrayexpress

Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica: a reference for comparison with core eudicots and basal angiosperms

Our results provide a foundation for comparative gene expression studies between eudicots and basal angiosperms. We identified whorl-specific gene expression patterns in Eschscholzia, and examined the floral expression of several gene families, such as MADS-box, bHLH and MYB. Interestingly, most hom...

ORGANISM(S): Eschscholzia californica

2010-09-21 | GSE24237 | GEO

New Fossil Evidence Suggests That Angiosperms Flourished in the Middle Jurassic.

Not available

S-EPMC10059865 | biostudies-literature

NGS sequencing data of early angiosperms

PRJNA553292 | ENA

Macroevolutionary dynamics in the transition of angiosperms to aquatic environments.

Not available

S-EPMC9320795 | biostudies-literature

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