Ants - OmicsDI

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Unknown (1869)
Genomics (490)
Transcriptomics (89)
Proteomics (38)
Metabolomics (20)
Methylation profiling (5)
Other (2)
Models (1)

Organisms

Homo sapiens (25)
Harpegnathos saltator (22)
Solenopsis invicta (21)
Camponotus floridanus (19)
Mus musculus (5)
Drosophila melanogaster (3)
Arabidopsis thaliana (2)
Acromyrmex echinatior (2)
Solenopsis richteri (2)
Monomorium pharaonis (2)
Ooceraea biroi (2)
Tetramorium bicarinatum (1)
Hyalella azteca (1)
Atta vollenweideri (1)
Cardiocondyla obscurior (1)
Lasius niger (1)
Malus domestica (1)
mixed sample (1)
Atta cephalotes (1)
Atta sexdens (1)
Solenopsis invicta x Solenopsis richteri (1)
Camponotus castaneus (1)
Ophiocordyceps unilateralis (1)
Blattella asahinai (1)
Polistes carolina (1)
Microplitis demolitor (1)
Reticulitermes flavipes (1)
Eublaberus posticus (1)
Copidosoma floridanum (1)
Heliothis virescens (1)

Organisms

Harpegnathos saltator (12)
Solenopsis invicta (10)
Camponotus floridanus (8)
ant metagenome (6)
insect metagenome (6)
Formicidae (5)
insect gut metagenome (5)
Rhinophrynus dorsalis (3)
Orycteropus afer (3)
Formica selysi (3)
Ooceraea biroi (3)
Acromyrmex echinatior (3)
Monomorium pharaonis (3)
ant fungus garden metagenome (3)
Candidatus Blochmanniella floridana (2)
Cataglyphis hispanica (2)
Cardiocondyla obscurior (2)
Polyrhachis lamellidens (2)
Camponotus fellah (2)
phyllosphere metagenome (2)
Bacteria (2)
Homo sapiens (2)
Solenopsis fugax (1)
Pseudonocardia sp. EC080625-04 (1)
Candidatus Blochmanniella chromaiodes str. 640 (1)
Ophiocordyceps kimflemingiae (1)
Pseudonocardia sp. ICBG1142 (1)
Pseudonocardia sp. ICBG601 (1)
Pseudonocardia sp. ICBG1034 (1)
Pseudonocardia sp. ICBG162 (1)

Repository

ENA (479)
biostudies-arrayexpress (57)
geo (49)
pride (25)
GNPS (16)
MassIVE (7)
MetaboLights (4)
PAXDB (3)
iProX (2)
BioModels (1)
EGA (1)
PanoramaPublic (1)

Tissue

Venom (3)
Whole body (3)
Liver (3)
Venom gland (2)
Seminal vesicle fluid (2)
Hemolymph (2)
Bodily fluid (1)
Secretory cell (1)
Spermatheca (1)
Midgut (1)
Diploid cell (1)
Feces (1)
Venom sac (1)
Saliva (1)
Cell culture (1)

Disease

Disease free (1)

Technology Type

Mass Spectrometry (25)
Shotgun proteomics (15)
Top-down proteomics (7)
Gel-based experiment (5)
Mass spectrometry assay (3)
Data-dependent acquisition (3)
Bottom-up proteomics (2)
Mass spectrometry (1)
Data-independent acquisition (1)

Instrument Platform

Illumina NovaSeq 6000 (7)
MaXis (4)
NextSeq 500 (3)
Q Exactive (3)
Illumina HiSeq 2500 (2)
Thermo Fisher Scientific (MA, USA) Q Exactive hybrid quadrupole-orbitrap mass spectrometer (2)
MicrOTOF-Q III (2)
6546 Q-TOF LC/MS (Agilent instrument model) (2)
LTQ Velos ETD (2)
6530A Q-TOF LC/MS (2)
LTQ Orbitrap Velos (2)
6520A Quadrupole Time-of-Flight LC/MS (2)
Linux server, HPC cluster (1)
Not applicable in this study (1)
Thermal cycler (Bio-Rad C1000), Agilent 2100 Bioanalyzer, Qubit 4 Fluorometer (1)
Benchtop centrifuge, vortex, NanoDrop or plate reader (for RiboGreen assay), TapeStation (Agilent) (1)
Liquid nitrogen freezer, surgical instruments (1)
Illumina HiSeq 2000 (1)
Thermo Fisher Scientific Vanquish Horizon Duo ultra-high performance liquid chromatography (UHPLC) system with an Accucore C18 column with 150 mm length, 2.1 mm internal diameter, and 2.6 micron particle size (1)
ITQ 1100 (1)
Thermo Fisher Scientific (MA, USA) Vanquish Horizon Duo ultra-high performance liquid chromatography (UHPLC) system with an Accucore C18 column with 150 mm length, 2.1 mm internal diameter, and 2.6 µm particle size (1)
Thermo Scientific instrument model|1000494 (1)
Q-Tof micro (1)
6530C Q-TOF LC/MS (Agilent instrument model) (1)
MicrOTOF-Q II (1)
MaXis impact (1)
Agilent 6530 Accurate-Mass Q-TOF LC/MS (1)
LTQ FT (1)
LTQ (1)
TripleTOF 5600 (1)

Publication Date

2025 (15)
2018 (15)
2023 (14)
2017 (12)
2013 (12)
2012 (12)
2020 (10)
2019 (10)
2026 (9)
2024 (8)
2022 (8)
2010 (8)
2014 (6)
2011 (5)
2015 (4)
2008 (4)
2021 (3)
2016 (3)
2009 (3)
2006 (1)

UNIPROT ID/AC

A0A0J7KDN7_LASNI (3)
A0A0J7KNB9_LASNI (3)
A0A0J7KVJ8_LASNI (3)
A0A0J7NH77_LASNI (3)
A0A0J7KJE1_LASNI (3)
A0A0J7NUN8_LASNI (3)
A0A0J7L0Y5_LASNI (3)
A0A0J7K9T4_LASNI (3)
A0A0J7KDI5_LASNI (3)
A0A0J7L9L8_LASNI (3)
A0A0J7N1L3_LASNI (3)
A0A0J7KSB6_LASNI (3)
A0A0J7L4B6_LASNI (3)
A0A0J7KLQ4_LASNI (3)
A0A0J7LAE1_LASNI (3)
A0A0J7P5L4_LASNI (3)
A0A0J7KYH5_LASNI (3)
A0A0J7L9G5_LASNI (3)
A0A0J7NS31_LASNI (3)
A0A0J7KZ38_LASNI (3)
A0A0J7K615_LASNI (3)
A0A0J7KJE2_LASNI (3)
A0A0J7KZU0_LASNI (3)
A0A0J7L1K1_LASNI (3)
A0A0J7KX82_LASNI (3)
A0A0J7KVE5_LASNI (3)
A0A0J7KQQ3_LASNI (3)
A0A0J7L542_LASNI (3)
A0A0J7KJT5_LASNI (3)
A0A0J7KUN9_LASNI (3)

CHEBI ID

CHEBI:32938 (1)
CHEBI:46050 (1)
CHEBI:4828 (1)

Metabolite Name

N-pentacosane (1)
N-docosane (1)
Ergothioneine (1)

First Public Date

2024 (60)
2022 (53)
2026 (48)
2025 (43)
2023 (41)
2021 (40)
2020 (31)
2013 (31)
2019 (27)
2018 (26)
2017 (25)
2016 (25)
2014 (15)
2015 (13)
2012 (1)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Third Military Medical University (2)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (2)
Department of Ecology and Evolution, University of Lausanne, CH-1015 Lausanne, Switzerland (1)
Institute for Molecular Biosciences, The University of Queensland, Queensland 4072, Australia (1)
Laboratory of Social Evolution and Behavior, The Rockefeller University, New York, NY 10065 (1)
CNRS, UMR Ecologie des forêts de Guyane – EcoFoG (AgroParisTech, CIRAD, INRAE, Université de Guyane, Université des Antilles), Campus Agronomique, BP 316, 97379 Kourou Cedex, France (1)
Centre for Integrative Bee Research (CIBER) Department of Entomology University of California Riverside, CA 92521 United States of America (1)
Centre for Integrative Bee Research (CIBER) Department of Entomology University of California Riverside, CA 92521United States of America (1)
Centre for Advanced Imaging, The University of Queensland, St Lucia, QLD 4072, Australia. Centre for Biodiversity Dynamics, Department of Biology, NTNU, N-7491 Trondheim, Norway Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, 0316 Oslo, Norway (1)
Department of Ecology and Evolution, Biophore, University of Lausanne, CH-1015 Lausanne, Switzerland (1)
Institute of Biochemistry, Faculty of Medicine, University Giessen, Friedrichstrasse 24, 35392 Giessen, Germany (1)
Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia (1)
EA-7417 BTSB, INU Champollion, Place de Verdun, 81012 Albi, France (1)
Novo Nordisk Foundation Center for Biosustainability, DTU Biosustain, Kgs. Lyngby, Denmark (1)
Department of Biology University of Fribourg (1)
Nanjing University (1)
Département d'écologie et évolution Université de Lausanne Bâtiment Biophore CH-1015 Lausanne Switzerland (1)
Departamento de Procesos y Tecnología, Universidad Autónoma Metropolitana-Cuajimalpa,Ciudad de Mexico, Mexico. (1)
Institute for Molecular Bioscience, University of Queensland; QLD 4072, Australia (1)
Steven M Claypool, Department of Physiology, Johns HopkinsUniversity School of Medicine, Baltimore, Maryland 21205 USA (1)
Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Denmark (1)
Institute of Molecular Biology (IMB) (1)
EA-7417, Institut National Universitaire Champollion, Place de Verdun, 81012 Albi, France (1)

IsPrivate

False (1)

Submitter Keywords

Not Peer Reviewed (1)

Classification

bacteria (13)

Study type

Transcription profiling by array (32)
RNA-seq of coding RNA (9)
RNA-seq of coding RNA from single cells (4)
RNA-seq of non coding RNA (3)
Cell line - High-throughput sequencing (2)
ChIP-seq (2)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
High-throughput sequencing (1)
DNA-seq (1)

Release Date

2023 (170)
2022 (168)
2018 (164)
2021 (163)
2020 (161)
2025 (141)
2017 (130)
2019 (122)
2024 (116)
2015 (113)
2016 (104)
2014 (87)
2013 (62)
2012 (49)
2011 (39)
2010 (31)
2009 (26)
2007 (18)
2008 (17)
2026 (16)
2006 (12)
2004 (5)
2002 (4)
2005 (3)
2003 (3)
2001 (1)
2000 (1)

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Imaging with Mass Spectrometry of Bacteria on the Exoskeleton of Fungus-Growing Ants

Mass spectrometry imaging is a powerful analytical technique for detecting and determining spatial distributions of molecules within a sample. Typically, mass spectrometry imaging is limited to the analysis of thin tissue sections taken from the middle of a sample. In this work, we present a mass sp...

2018-07-26 | MTBLS471 | MetaboLights

High-throughput sequencing analyses of two ants: Camponotus floridanus and Harpegnathos saltator

This SuperSeries is composed of the following subset Series: GSE22678: Transcriptome sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator GSE22679: Small RNA sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator Refer to individual Serie...

ORGANISM(S): Harpegnathos saltator

2010-08-26 | E-GEOD-22680 | biostudies-arrayexpress

Transcriptome sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator

Deep sequencing of mRNA from two Ants: Camponotus floridanus and Harpegnathos saltator Analysis of poly(A)+ RNA of different specimens: egg,larva,male,minor and major for Camponotus floridanus while egg,larva,male,worker and gammergate for Harpegnathos saltator

ORGANISM(S): Camponotus floridanus

2010-08-26 | E-GEOD-22678 | biostudies-arrayexpress

Small RNA sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator

Deep sequencing of small RNA from two Ants: Camponotus floridanus and Harpegnathos saltator Analysis of small RNA expression profile from different specimens: egg,larva,male,minor and major for Camponotus floridanus while egg,larva,male,worker and gammergate for Harpegnathos saltator

ORGANISM(S): Harpegnathos saltator

2010-08-26 | E-GEOD-22679 | biostudies-arrayexpress

From plants to ants: Evaluating lipidomic changes in leaf-cutter ant fungus gardens

Leaf-cutter ants use fresh plant material to cultivate an obligate mutualistic fungus Leucoagaricus gongylophorus in specialized fungus gardens to access and transform nutrients from plant biomass that would otherwise be unavailable to the ants. Here, we evaluated the lipidomic differences between t...

ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479)

2019-10-30 | MSV000084520 | MassIVE

smRNA sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator

Deep sequencing of smRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator Total RNA were isolated from virgin queens and queens by pulverizing the entire animal after removal of gut and poison glands in liquid N2 and then dissolving in TRIzol. Gel-purified 18-...

ORGANISM(S): Harpegnathos saltator

2012-08-09 | E-GEOD-31344 | biostudies-arrayexpress

Transcriptome sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator

Deep sequencing of mRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator Total RNA were isolated from virgin queens and queens by pulverizing the entire animal after removal of gut and poison glands in liquid N2 and then dissolving in TRIzol. PolyA+ RNA were p...

ORGANISM(S): Camponotus floridanus

2012-08-08 | E-GEOD-31346 | biostudies-arrayexpress

A chromatin link to caste identity in the carpenter ant Camponotus floridanus

The goal of this study was to assay the extent of variation in chromatin organization between 3 ant castes (major and minor female workers and males) in one colony of Camponotus floridanus carpenter ant using ChIPseq. 45 samples total: 30 ChIP samples and 3 inputs for total histone H3, 7 histone H3 ...

ORGANISM(S): Camponotus floridanus

2012-11-26 | E-GEOD-37523 | biostudies-arrayexpress

Genome-wide analysis of global and caste-specific DNA methylation in two ant species: Camponotus floridanus and Harpegnathos saltator

This SuperSeries is composed of the following subset Series: GSE31344: smRNA sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator GSE31346: Transcriptome sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator GSE...

ORGANISM(S): Camponotus floridanus

2012-08-08 | E-GEOD-31577 | biostudies-arrayexpress

Genomics of colony founding in fire ants - pleo2

This experiment was performed to investigate the effect of the manipulation of social rank on gene expression. Fire ants newly mated queens were paired and placed in nesting chambers. After emergence of workers, queensM-^R behavior was monitored. Once the behavioral observation revealed the social r...

ORGANISM(S): Solenopsis invicta

2013-08-21 | E-MEXP-3898 | biostudies-arrayexpress

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