Aquaculture - OmicsDI

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Unknown (9334)
Genomics (3125)
Transcriptomics (276)
Proteomics (119)
Metabolomics (41)
Models (3)
Methylation profiling (2)

Organisms

Salmo salar (71)
Oncorhynchus mykiss (54)
Solea senegalensis (9)
Danio rerio (8)
Sparus aurata (8)
Scophthalmus maximus (7)
Ruditapes philippinarum (7)
Ctenopharyngodon idella (7)
Epinephelus fuscoguttatus x Epinephelus lanceolatus (6)
Lepeophtheirus salmonis (6)
Gadus morhua (6)
Lates calcarifer (4)
Pimephales promelas (4)
Dicentrarchus labrax (4)
Cyprinus carpio (4)
Penaeus monodon (3)
Scylla paramamosain (3)
Mytilus galloprovincialis (3)
Hypomesus transpacificus (2)
Acropora millepora (2)
Coregonus lavaretus (2)
Mugil cephalus (1)
Epinephelus fuscoguttatus (1)
Mercenaria mercenaria (1)
Coryphaena hippurus (1)
Ictalurus punctatus x Ictalurus furcatus (1)
Dugesia japonica (1)
Solea solea (1)
Epinephelus tauvina (1)
uncultured organism (1)

Organisms

aquaculture metagenome (76)
Oncorhynchus mykiss (51)
Salmo salar (50)
aquatic metagenome (25)
Micropterus salmoides (23)
fish gut metagenome (23)
Vibrio parahaemolyticus (17)
Penaeus vannamei (15)
Danio rerio (15)
Scophthalmus maximus (14)
Francisella orientalis (12)
Aeromonas hydrophila (12)
Sparus aurata (11)
seawater metagenome (11)
sediment metagenome (11)
unidentified (11)
Mytilus galloprovincialis (10)
Oreochromis niloticus (10)
wastewater metagenome (10)
Penaeus monodon (10)
Lates calcarifer (9)
Pinctada fucata (9)
pond metagenome (9)
fish metagenome (9)
marine metagenome (9)
Bacillus velezensis (9)
Edwardsiella ictaluri (8)
Streptococcus agalactiae (8)
Strongylocentrotus intermedius (7)
Yersinia ruckeri (7)

Repository

ENA (3087)
geo (178)
biostudies-arrayexpress (120)
pride (78)
MetaboLights (39)
iProX (29)
EVA (10)
NODE (8)
MassIVE (5)
PanoramaPublic (5)
BioModels (3)
GNPS (2)
jPOST (1)
PAXDB (1)

Tissue

Blood serum (11)
Liver (11)
Blood cell (8)
Whole body (6)
Blood plasma (4)
Egg (4)
Intestine (4)
Skin (4)
Epithelial cell (3)
Gill (3)
Oocyte (3)
Skin mucus (3)
Brain (2)
Cell culture (2)
Gonad (2)
Kidney (2)
Mantle (2)
Muscle (2)
Byssus (1)
Exocrine glandular secretion (1)
Eye (1)
Gut (1)
Intestinal mucosa (1)
Larva (1)
Mantle muscle (1)
Mucus secretion (1)
Other source (1)
Ovarian fluid (1)
Radula (1)
Secretion (1)

Disease

Parasitic infectious disease (2)
Toxicity (1)
Disease by environmental exposure (1)
Inflammation (1)
Septicemia (1)

Technology Type

Mass Spectrometry (78)
Shotgun proteomics (41)
Mass spectrometry (20)
Mass spectrometry assay (14)
Bottom-up proteomics (13)
Gel-based experiment (9)
Top-down proteomics (7)
NMR spectroscopy (6)
Data-dependent acquisition (5)
SWATH MS (4)
Data-independent acquisition (3)
MSE (2)
All-ion fragmentation (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (10)
HiSeq X Ten (9)
Liquid Chromatography MS - negative - hilic (8)
Liquid Chromatography MS - positive - hilic (8)
Liquid Chromatography MS - positive - reverse-phase (7)
Liquid Chromatography MS - negative - reverse-phase (7)
- (6)
Illumina NovaSeq 6000 (5)
Liquid Chromatography MS - negative - reverse phase (5)
Illumina HiSeq 2500 (4)
Varian (4)
Illumina HiSeq 4000 (3)
Illumina NovaSeq X (2)
Q Exactive HF (2)
UPLC-QTOF (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - alternating - reverse-phase (2)
Liquid Chromatography MS - alternating - hilic (2)
Not applicable (1)
Illumina MiSeq (1)
NextSeq 500 (1)
Affymetrix (1)
TripleTOF 5600+|1002584 (1)
Easy nLC 1200 UHPLC system coupled to a Q Exactive HF-X Hybrid Quadrupole-Orbitrap mass spectrometer (1)
TimsTOF fleX (1)
Liquid Chromatography MS - negative- reverse phase (1)
Liquid Chromatography MS - positive- reverse phase (1)
Gas Chromatography MS - (1)
Nuclear Magnetic Resonance (NMR) (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)

Publication Date

2026 (65)
2025 (55)
2021 (40)
2023 (39)
2022 (37)
2012 (27)
2024 (24)
2019 (22)
2010 (22)
2020 (21)
2015 (20)
2018 (18)
2016 (15)
2011 (15)
2017 (14)
2014 (13)
2013 (9)
2009 (5)
2008 (3)
2005 (2)
2006 (1)

UNIPROT ID/AC

A0A1S3MBI7 (1)
A0A1S3RDV7 (1)
A0A1S3SLA8 (1)
B5X3P0 (1)
A0A1S3N3T3 (1)
A0A1S3NZZ4 (1)
A0A1S3P094 (1)
A0A1S3PY93 (1)
Q19VI0 (1)
A0A1S3M1N8 (1)
A0A1S3NHN0 (1)
A0A1S3KZD6 (1)
A0A1S3SD21 (1)
A0A1S3LDQ3 (1)
A0A1S3P3J9 (1)
A0A1S3LD76 (1)
A0A1S3LEH9 (1)
A0A1S3MF70 (1)
A0A1S3MF67 (1)
A0A1S3MEX0 (1)
A0A1S3MEU5 (1)
A0A1S3RYH9 (1)
A0A1S3RYI5 (1)
A0A1S3P4C7 (1)
A0A1S3P297 (1)
A0A1S3P8N0 (1)
A0A1S3PB08 (1)
A0A1S3N1B9 (1)
C0HBN7 (1)
A0A1S3LIF1 (1)

ENSEMBL ID

ENSDARG00000063559 (1)
ENSDARG00000090714 (1)
ENSDARG00000051873 (1)
ENSDARG00000061100 (1)
ENSDARG00000035506 (1)
ENSDARG00000024112 (1)
ENSDARG00000057714 (1)
ENSDARG00000010347 (1)
ENSDARG00000059411 (1)
ENSDARG00000036809 (1)
ENSDARG00000035565 (1)
ENSDARG00000029952 (1)
ENSDARG00000045414 (1)
ENSDARG00000020270 (1)
ENSDARG00000070844 (1)
ENSDARG00000077782 (1)
ENSDARG00000052942 (1)
ENSDARG00000075754 (1)
ENSDARG00000051853 (1)
ENSDARG00000077244 (1)
ENSDARG00000032218 (1)
ENSDARG00000063167 (1)
ENSDARG00000069937 (1)
ENSDARG00000063433 (1)
ENSDARG00000044642 (1)
ENSDARG00000016048 (1)
ENSDARG00000004115 (1)
ENSDARG00000006577 (1)
ENSDARG00000019236 (1)
ENSDARG00000059123 (1)

CHEBI ID

CHEBI:13097 (1)
CHEBI:21278 (1)
CHEBI:63163 (1)
CHEBI:6209 (1)
CHEBI:44590 (1)
CHEBI:21260 (1)
CHEBI:44513 (1)
CHEBI:6206 (1)
CHEBI:44708 (1)
CHEBI:44466 (1)
CHEBI:13094 (1)
CHEBI:47822 (1)
CHEBI:60107 (1)
CHEBI:21486 (1)
CHEBI:60111 (1)
CHEBI:43088 (1)
CHEBI:47823 (1)
CHEBI:28538 (1)
CHEBI:47819 (1)
CHEBI:47821 (1)
CHEBI:21601 (1)
CHEBI:7203 (1)
CHEBI:77859 (1)
CHEBI:19473 (1)
CHEBI:11524 (1)
CHEBI:1021 (1)
CHEBI:12542 (1)
CHEBI:47984 (1)
CHEBI:1022 (1)
CHEBI:42925 (1)

Metabolite Name

Taurine (12)
Inosine (11)
Uridine (10)
Betaine (9)
Guanine (9)
Stachyose (8)
Xanthine (8)
Guanosine (8)
Pseudouridine (8)
Maltotetraose (8)
Valine (7)
L-Threonine (7)
Choline (7)
Sarcosine (7)
L-Serine (7)
Cytidine (7)
Maltohexaose (7)
Deoxycytidine (7)
Ketoleucine (6)
Thymine (6)
Aspartame (6)
Methionine (6)
Cytosine (6)
Alanine (6)
Oleic acid (6)
L-Glutamine (6)
Isoleucine (6)
Adenine (6)
Verbascose (6)
Canrenone (6)

First Public Date

2026 (536)
2025 (511)
2024 (470)
2023 (316)
2022 (226)
2021 (212)
2020 (191)
2019 (158)
2018 (104)
2017 (97)
2014 (85)
2015 (68)
2013 (61)
2016 (50)
2011 (1)
2010 (1)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Director ICAR - Central Inland Fisheries Research Institute Manirampore, Barrackpore, Kolkata 700120 (4)
Director CIFRI (3)
Director Cifri (3)
Faculty of Biosciences and Aquaculture, Nord University, Bodø, Norway (2)
Hohai University (2)
Institute of Aquaculture, University of Stirling (2)
Proteomics facility manager (2)
1. College of Marine Science, Hainan University, Haikou 570228, China; 2. State Key Laboratory of Marine Resource Utilization in South China Sea, Haikou 570228, China) (1)
AQUACEN - National Reference Laboratory for Aquatic Animal Diseases (1)
Associate Professor Jan Strugnell Director, Centre for Sustainable Tropical Fisheries and Aquaculture, and Marine Biology and Aquaculture College of Science and Engineering, James Cook University, Townsville, 4811 QLD, Australia  (1)
Associate Professor, The Swire Institute of Marine Sciences and School of Biological Sciences, The University of Hong Kong, Hong Kong (1)
CCMAR (Center of Marine Sciences), Universidade do Algarve,Campus de Gambelas, Portugal (1)
CCMAR (Center of Marine Sciences, Universidade do Algarve,Campus de Gambelas, Portugal (1)
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, Porto University (1)
California Polytechnic State University San Luis Obispo ;Biological Sciences Department ; California Unites States (1)
Center for Neuroscience and Cell Biology (1)
Center of Marine Sciences (CCMAR), Universidade do Algarve, Faro, Portugal (1)
Centre for Sustainable Tropical Fisheries and Aquaculture, James Cook University, Townsville, QLD, 4811, Australia (1)
College of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang, China (1)
Department of Animal and Aquaculture Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Aas, Norway (1)
Department of Animal and Aquaculture Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Arboretveien 6, Ås, Norway. (1)
Department of Biochemistry, Genetics and Immunology, University of Vigo, Spain (1)
Department of Biosciences and Bioengineering, IIT Bombay, India (1)
Department of Immunotechnology, Hus 406, Medicon Village, Lund University, 223 81, Lund, Sweden (1)
Department of Pharmaceutical Sciences, College of Pharmacy, QU Health Sector, Qatar University, 2713, Doha, Qatar (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (1)
Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway (1)
Faculty of Fisheries and Protection of Water, South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, University of South Bohemia in Ceske Budejovice, Czech Republic (1)
Faculty of Veterinary Medicine Department of Preclinical Sciences and Pathology (PREPAT), Norwegian University of Life Sciences (NMBU), ÅS, Norway (1)
Fish Nutrition and Welfare Lab, CIIMAR (1)

Tags

pathogen (165)
pathogen:bacterium (143)
pathogen:virus (22)
wastewater (10)
xref:PubMed:35650521 (4)
xref:PubMed:41219817 (3)
xref:PubMed:37031231 (3)
xref:PubMed:32087247 (3)
xref:PubMed:36351462 (3)
xref:PubMed:35003123 (2)
xref:PubMed:34559285 (2)
xref:PubMed:35163102 (2)
xref:PubMed:30329019 (2)
xref:PubMed:40348785 (2)
xref:PubMed:40846931 (2)
xref:PubMed:41673556 (2)
xref:PubMed:18070959 (2)
xref:PubMed:22708615 (2)
xref:PubMed:29069476 (2)
xref:PubMed:27211262 (1)
xref:PubMed:35312005 (1)
xref:PubMed:34214627 (1)
xref:PubMed:41832354 (1)
xref:PubMed:39657104 (1)
xref:PubMed:35591870 (1)
xref:PubMed:41690198 (1)
xref:PubMed:35174239 (1)
xref:PubMed:38078722 (1)
xref:PubMed:32323195 (1)
xref:PubMed:22967181 (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (2)

Classification

bacteria (143)
viruses (22)

Study type

Transcription profiling by array (83)
RNA-seq of coding RNA (24)
RNA-seq of non coding RNA (4)
Unknown experiment type (3)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Ribo-seq (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (1226)
2025 (1160)
2023 (1121)
2021 (1001)
2024 (924)
2020 (768)
2019 (614)
2018 (525)
2017 (428)
2016 (353)
2015 (291)
2014 (244)
2026 (182)
2013 (164)
2012 (138)
2011 (101)
2010 (72)
2008 (41)
2009 (36)
2007 (22)
2005 (15)
2006 (12)
2004 (5)
2003 (4)
2002 (3)
2001 (2)
1998 (2)

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Comparative evaluation of nutritional quality and flavor characteristics for Acrossocheilus fasciatus muscle in different aquaculture systems

Abstract:This study comparatively evaluated the effects of four aquaculture systems pond (PD), rice field (RF), round bucket (RB) and water trough (WT) on the flesh quality, gut microbiota and metabolites of Acrossocheilus fasciatus. Compared with the other three groups, texture analysis revealed...

2025-11-11 | MTBLS13305 | MetaboLights

Cage aquaculture

Cage aquaculture Metagenome

PRJNA1085096 | ENA

aquaculture metagenome

aquaculture metagenome Raw sequence reads

PRJNA1072069 | ENA

aquaculture metagenome

aquaculture metagenome Raw sequence reads

PRJNA1028170 | ENA

aquaculture metagenome

aquaculture metagenome Raw sequence reads

PRJNA1133700 | ENA

aquaculture metagenome

aquaculture metagenome Raw sequence reads

PRJNA1029339 | ENA

aquaculture water

aquaculture water Raw sequence reads

PRJNA1097320 | ENA

aquaculture metagenome

aquaculture metagenome Raw sequence reads

PRJNA877850 | ENA

aquaculture water

aquaculture water Raw sequence reads

PRJNA1260720 | ENA

aquaculture metagenome

aquaculture metagenome under different phosphorus levels

PRJNA891212 | ENA

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