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TranscriptomicsNitrate Stress in Desulfovibrio vulgaris Hildenborough
Using data from microarray experiments, we investigated the effects of excess sodium nitrate on Desulfovibrio vulgaris. Keywords: stress response, time course Comparison of cells treated with 105 mM sodium nitrate to untreated cells at times of 0, 30, 60, 120, and 240 min.
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2010-06-22 | E-GEOD-20079 | biostudies-arrayexpress
TranscriptomicsCell wide response to air exposure in Desulfovibrio vulgaris Hildenborough
We investigated the effects of air exposure on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: stress response, time course Comparison of cells treated with air to untreated cells at 0,10,30,120,240 min.
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2007-08-08 | E-GEOD-8196 | biostudies-arrayexpress
TranscriptomicspH stress in Desulfovibrio vulgaris Hildenborough
Using data from microarray experiments, we investigated the effects of excess NaCl on D. vulgaris. Keywords: stress response, time course Comparison of cells treated with pH10 pH to untreated cells at times of 0,120,240,30,60 min.
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2007-08-31 | E-GEOD-8197 | biostudies-arrayexpress
TranscriptomicsSalt/NaCl stress in Desulfovibrio vulgaris Hildenborough
This set of microarray data was used to investigate the effects of D. vulgaris adaptation to excess NaCl. Keywords: stress response, one time point (the mid-log phase for both control and treated cells) Comparison of cells treated with 250 Salt:NaCl to untreated cells at times of mid-log phase min.
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2010-04-11 | E-GEOD-14343 | biostudies-arrayexpress
TranscriptomicsHydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough (REPLACED BY GSE21441)
Using data from microarray experiments, we investigated the effects of excess hydrogen peroxide on D. vulgaris. Keywords: stress response, time course Comparison of wild type and deletion mutant cells treated with 1 mM H2O2 to untreated cells at times of 0 and 120 min. See also Series GSE4447 (http...
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2011-10-03 | E-GEOD-14345 | biostudies-arrayexpress
TranscriptomicsHydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough (REPLACED BY GSE21438)
Using data from microarray experiments, we investigated the effects of excess hydrogen peroxide on D. vulgaris. Keywords: stress response, time course Comparison of wild type and deletion mutant cells treated with 1 mM H2O2 to untreated cells at times of 0 and 120 min. See also Series GSE4447 (http...
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2011-10-03 | E-GEOD-14355 | biostudies-arrayexpress
TranscriptomicsNitrate Stress in Desulfovibrio vulgaris Hildenborough (Fur knockout : JW707)
Using data from microarray experiments, we investigated the effects of excess sodium nitrate on D. vulgaris. Keywords: stress response, time course Comparison of cells treated with 105 mM sodium nitrate to untreated cells at times of 0, 30, 60, 120, and 240 min.
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2011-02-01 | E-GEOD-20092 | biostudies-arrayexpress
TranscriptomicsCell wide response to low oxygen exposure in Desulfovibrio vulgaris Hildenborough
We investigated the effects of low level oxygen on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: time course, stress response Comparison of cells treated with 1000 ppm oxygen to untreated cells at 60,120,240 min.
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2010-06-10 | E-GEOD-7816 | biostudies-arrayexpress
TranscriptomicsCoculture of Desulfovibrio vulgaris Hildenborough and Methanococcus maripaludis
Using data from microarray experiments we investigated a coculture of D. vulgaris Hildenborough and Methanococcus maripaludis. Using data from microarray experiments we investigated a coculture of D. vulgaris Hildenborough and Methanococcus maripaludis.
ORGANISM(S): Methanococcus maripaludis S2 
2011-11-01 | E-GEOD-30831 | biostudies-arrayexpress
ModelsCao2010 - Epigenetic state of lysogeny in phage lambda
References: 1. Xiaomei Zhu, Lan Yin, Leroy Hood, David Galas and Ping Ao, Efficiency, Robustness and Stochasticity of Gene Regulatory networks in Systems biology: Lambda switch as a working example, 2006. 2. Adam Arkin, John Ross and Harley H. McAdams, Stochastic kinetic analysis of developmental pa...
2005-01-01 | MODEL1308080003 | BioModels
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