Artificial intelligence

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Unknown (20404)
Genomics (158)
Clinical (77)
Proteomics (61)
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Models (10)
Other (8)
Metabolomics (6)
Methylation profiling (1)

Organisms

Homo sapiens (55)
Bombyx mori (38)
Klebsiella pneumoniae (38)
Schizosaccharomyces pombe (38)
Human immunodeficiency virus 1 (38)
Oryza sativa Indica Group (38)
Sinorhizobium meliloti BL225C (38)
Vitis (38)
Sus scrofa domesticus (38)
Ostreococcus tauri (38)
Saccharomyces cerevisiae (38)
Synechocystis sp. PCC 6803 (38)
Mus musculus (17)
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Bacillus subtilis subsp. subtilis str. 168 (2)
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cellular organisms (1)
Arabidopsis thaliana (1)

Organisms

Homo sapiens (59)
Mus musculus (17)
human gut metagenome (6)
Rattus norvegicus (4)
Xenopus laevis (3)
unidentified (3)
Drosophila melanogaster (2)
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Canis lupus familiaris (1)
Pseudomonas aeruginosa (1)
riverine metagenome (1)
Saccharomyces cerevisiae (1)

Repository

ENA (148)
geo (60)
pride (38)
iProX (12)
BioModels (10)
biostudies-arrayexpress (7)
jPOST (6)
MassIVE (6)
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EGA (2)
GNPS (2)
MetabolomicsWorkbench (1)

Tissue

Cell culture (7)
Blood plasma (5)
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Skin (3)
Brain (3)
Kidney (3)
Malignant cell (2)
Cerebrospinal fluid (2)
Urine (2)
Early embryonic cell (2)
Saliva (2)
Colon (2)
Blood (1)
Mesothelial cell of peritoneum (1)
PanIN cell (1)
Epithelium of pancreatic duct (1)
Prostate cancer cell (1)
Pancreatic duct (1)
Seminal vesicle (1)
Stromal cell (1)
Tonsil (1)
Knee (1)
Vaginal fluid (1)
Pancreatic ductal adenocarcinoma cell (1)
Peritoneum (1)
B-lymphoblastoid cell line (1)
Acute myeloid leukemia cell line (1)
Diffuse large B-cell lymphoma cell line (1)
Keratinocyte (1)
Melanocyte (1)

Disease

Colorectal Neoplasms (21)
Adenoma (11)
Colorectal cancer (5)
Colorectal cancer (4)
Colorectal adenoma (3)
Stomach Neoplasms (3)
Colorectal polyps (2)
Colorectal neoplasm (2)
Cancer (2)
Adenoma detection rate Proximal adenoma detection rate Advanced adenoma detection rate Adenoma per colonoscopyProximal adenoma per colonoscopy Advanced adenoma per colonoscopy (1)
Accuracy of Artificial intelligence colonoscopy in Colorectal Cancer Screening (1)
Family history of malignant neoplasm of digestive organs (1)
Malignant neoplasm of other and ill-defined sites in the lip, oral cavity and pharynx (1)
Neoplastic polyp of the colon and rectum (1)
Colo-rectal adenoma or cancer (1)
Colorectal cancer liver metastases (1)
Benign neoplasm of colon, rectum, anus and anal canal (1)
Suspected colorectal tumor (including colorectal adenoma) (1)
Colonic Polyps (1)
T1 colorectal cancer (1)
T2 colorectal cancer (1)
Breast cancer and colorectal cancer survivors (1)
Early colorectal cancer (1)
Polyps (1)
Metaplasia (1)
Colorectal tumor and cancer (1)
Inflammatory Bowel Diseases (1)
Neoplasm Metastasis (1)
Colorectal tumor (1)
Colorectal tumor (1)

Technology Type

Mass Spectrometry (39)
Bottom-up proteomics (13)
Shotgun proteomics (11)
Data-dependent acquisition (5)
SWATH MS (4)
Data-independent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry assay (2)
Proteogenomics (2)
Immunopeptidomics (2)
Gel-based experiment (2)
Mass spectrometry (1)
ESI (1)
MSE (1)
DiaPASEF (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Shimadzu Nexera LC-30AD UHPLC system (2)
Q-Exactive (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
BD FACSAria III (1)
DNBSEQ-G400 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
6220 Time-of-Flight LC/MS (1)
6495C Triple Quadrupole LC/MS (1)
Orbitrap Eclipse (1)
6560 Q-TOF LC/MS (1)
TimsTOF Pro (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2025 (32)
2024 (30)
2026 (30)
2023 (20)
2022 (11)
2021 (9)
2011 (3)
2012 (2)

CHEBI ID

CHEBI:38068 (1)

Metabolite Name

2-Carboxy-arabinitol (1)
1-(4-Hydroxy-3-methoxyphenyl)-7-phenyl-1-hepten-3-one (1)
10-Hydroperoxy-12-[6-[pent-2-en-1-yl]-2,3-dioxabicyclo[2.2.1]heptan-5-yl]dodeca-4,7,11-trienoylcarnitine (1)
Methacrylamide (1)
Lexipafant (1)
4-methyl-proline (1)
3beta-hydroxycholest-5-en-7-one-26-oate (1)
Ethyl 3-hydroxybutyrate glucoside (1)
2-(3,4-Dihydroxy-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-5,7-dihydroxy-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4H-chromen-4-one (1)
Arecoline Hydrobromide (1)
8-(4-hydroxy-3-methoxyphenyl)-6,7-bis(hydroxymethyl)-3-methoxy-5,6,7,8-tetrahydronaphthalen-2-ol (1)
[4-(1,2-Dihydroxyethyl)-2-methoxyphenyl]oxidanesulfonic acid (1)
5-(1-Hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl)-3-methylpenta-2,4-dienoic acid (1)
Okanin-4'-O-glucoside (1)
Isosakuranetin-7-neohesperidoside (1)
5-Nonadecylresorcinol (1)
3-[6-[(E)-4,6-dimethyloct-2-en-2-yl]-5-methyloxan-2-yl]-4-hydroxy-5-(4-hydroxyphenyl)-1-methylpyridin-2-one (1)
1,2-Dihydroxyheptadec-16-en-4-yl acetate (1)
2-Butynedioic acid (1)
Tert-Butyl carbamate (1)
RoseOx (1)
Pgam (1)
6-Hydroxy-5a-methyl-3,9-dimethylidenedecahydronaphtho[1,2-b]furan-2(3h)-one (1)
(5Z,8Z,11E,14Z,16E,18S)-18-hydroxyicosa-5,8,11,14,16-pentaenoic acid (1)
1,2,3-Tri-O-galloyl-beta-D-glucose (1)
1,2-Dihydroxynaphthalene (1)
2-Methyl-6-(2-(4-(4-methylsulfonylamino)benzoylpiperidin-1-yl)ethyl)pyridine (1)
Anisyl acetate (1)
Ethyl 2-hydroxy-4-methylvalerate (1)
2-Hydroxyundecanoic acid (1)

First Public Date

2026 (44)
2025 (40)
2024 (25)
2023 (12)
2021 (10)
2022 (6)
2017 (4)
2019 (2)
2014 (2)
2020 (1)
2015 (1)
2013 (1)

Modelling Approach

Computational model (5)
Ordinary differential equation model (2)
Support-vector machine (1)
Random forest procedure (1)
Other (1)

Study status

Recruiting (28)
Completed (20)
Not yet recruiting (19)
Active, not recruiting (4)
Not provided (4)
Enrolling by invitation (2)

Lab affiliation

Medicinal Bioconvergence Research Center, Institute for Artificial Intelligence (1)
3Centers for Proteomics & Artificial Intelligence and Clinical Mass Spectrometry, Allegheny Health Network Cancer Institute, Allegheny Health Network, Pittsburgh, PA15202, USA (1)
Clinical Proteomics Medizinisches Proteom-Center Ruhr-University Bochum and Department of Anesthesiology, Intensive Care Medicine and Pain Therapy University Hospital Knappschaftskrankenhaus Bochum (1)
Department of Life Sciences, University of Modena and Reggio Emilia (Modena, Italy) (1)
Department of Translational Medicine, Lund University, Sweden (1)
1 Department of Urology, 2 Upstate Cancer Center, 3 Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
Children's Medical Research Institute, Faculty of Medicine and Health, Westmead, NSW, Australia (1)
Center for Proteomics & Artificial Intelligence Center for Clinical Mass Spectrometry Allegheny Health Network Cancer Institute 100 S Jackson Ave., Pittsburgh, PA 15202 (1)
Professor of Biochemistry Proteomics Unit Centro Nacional de Biotecnología (CSIC) Darwin 3, 28049, Madrid (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany. & NNF Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark (1)
Institute for Plant Biochemistry and Photosynthesis Department of Computer Science and Artificial Intelligence University of Seville Spain (1)
Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3BX, United Kingdom (1)
biocon (1)
Laboratory Medicine & Pathobiology University of Toronto (1)
Hubrecht Institute – Royal Netherlands Academy of Arts and Sciences & University Medical Centre Utrecht, Utrecht, The Netherlands (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Department of Anesthesia, Intensive Care Medicine and Pain Therapy, University Hospital Knappschaftskrankenhaus Bochum, Medizinisches Proteom-Center, Ruhr-University Bochum (1)
Director, Advanced Clinical Biosystems Institute, Cedars Sinai Medical Center (1)
Laboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg, CNRS, IPHC, UMR 7178, Strasbourg, France (1)
Proteome Center Rostock, University of Rostock, Germany (1)
Prof. Dr. Matthias Mann Max Planck Institute of Biochemistry Am Klopferspitz 18 82152 Martinsried +49 89 8578-2557 (1)
Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
OmicVision Biosciences ApS (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany. NNF Center for Protein Research, Faculty of Health Science, University of Copenhagen, Copenhagen, Denmark. (1)
- Department of Clinical Biochemistry, Copenhagen University Hospital - Bispebjerg and Frederiksberg Hospital, Copenhagen, Denmark - NNF Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen (1)
Artificial Intelligence, Innovation Frontier Institute of Research for Science and Technology, and the Department of Electrical Engineering, College of Electrical Engineering and Computer Science, National Taiwan University of Technology, Taiwan (1)
Harry Perkins Institute of Medical Research and ARC Centre of Excellence in Synthetic Biology, QEII Medical Centre, Nedlands, Western Australia 6009, Australia (1)
Woods Hole Oceanographic Institution (1)
Center for Molecular Medicine of the Austrian Academy of Sciences (CeMM) (1)
Professor, Biosciences & Bioengineering. Associate Faculty: MF School of Data Science and Artificial Intelligence Indian Institute of Technology Guwahati, Assam, India (1)

Keyword

Artificial Intelligence (6)
Artificial intelligence (6)
Colonoscopy (6)
AI (2)
Multi-omics (2)
Serrated lesions (2)
CT (2)
Artificial intelligence-assisted colonoscopy (2)
Colorectal adenomas (2)
Adenoma detection rate (2)
Colorectal polyps (2)
Adenoma (2)
AI system (1)
Guided Biopsy (1)
Computer-aided colonoscopy (1)
Software as a medical device (1)
Adenomas per endoscopy (1)
Mean adenomas per colonoscopy (1)
Polyp Size (1)
Follow-up interval (1)
Computer-aided diagnosis (1)
Reduced radiation doses (1)
Deep Learning Image Reconstructions (1)
DLIR (1)
Computer aided diagnosis (1)
Medical device (1)
Computed tomography (1)
LST (1)
SSL (1)
Molecular subtypes (1)

IsPrivate

False (10)

Submitter Keywords

Machine Learning Model (8)
Ersilia (5)
FAIR-AIML (5)
Not Peer Reviewed (1)

Classification

bacteria (1)

Study type

Interventional (43)
Observational (24)
Other (8)
Transcription profiling by array (4)
RNA-seq of coding RNA (2)
Observational patient registry (2)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (5845)
2024 (3798)
2023 (3299)
2022 (2734)
2021 (1793)
2020 (938)
2026 (859)
2019 (402)
2018 (201)
2017 (115)
2016 (102)
2015 (68)
2014 (65)
2013 (42)
2012 (41)
2011 (22)
2010 (19)
2009 (19)
2008 (19)
2007 (14)
2006 (9)
2005 (5)
2004 (2)

Location

China (19)
Japan (13)
Spain (9)
United States (6)
Germany (5)
France (4)
Singapore (3)
United Kingdom (3)
Ecuador (2)
Thailand (2)
Denmark (2)
Italy (2)
Netherlands (2)
Georgia (1)
Hong Kong (1)
Latvia (1)
Slovenia (1)
Taiwan (1)
New Zealand (1)
India (1)
Europe (1)
South Korea (1)
Poland (1)
Belgium (1)
Canada (1)

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Application of Artificial Intelligence to Plasma Metabolomics Profiles to Predict Response to Neoadjuvant Chemotherapy in Triple-Negative Breast Cancer

Not available

ORGANISM(S): Homo sapiens

ST002235 | MetabolomicsWorkbench

RNA-seq of S. cerevisiae with DOPAC and 4-nitrocatechol to investigate how Artificial Intelligence uncovers human carcinogenic metabolites

We have performed paired-end RNA-sequencing on budding yeast (BY4741), exposed to 4-nitrocatechol and 3,4-Dihydroxyphenylacetic acid (DOPAC). These two human metabolites were predicted as potential carcinogens using Metabokiller, an artificial intelligence-driven carcinogenicity predictor. The datas...

ORGANISM(S): Saccharomyces cerevisiae

2022-06-09 | E-MTAB-11179 | biostudies-arrayexpress

Artificial intelligence-based assessment of PD-L1 expression in diffuse large B cell lymphoma.

Not available

S-EPMC10973523 | biostudies-literature

iPAT Project: Genomics, Bioinformatics, and Artificial Intelligence to Study Pathogens

iPAT: Platform Based on Genomics, Bioinformatics, and Artificial Intelligence to Study Pathogens Isolated in Clinical Settings.

PRJEB96900 | ENA

Surveillance Modified by Artificial Intelligence in Endoscopy (SMARTIE)

Evaluation of an artificial intelligence system for polyp detection (CADe)

2386702 | ecrin-mdr-crc

Artificial Intelligence in Anesthesiology: Current Techniques, Clinical Applications, and Limitations.