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Unknown
(1883535)
Genomics
(234623)
Transcriptomics
(123704)
Proteomics
(45698)
Other
(6011)
Clinical
(4942)
Metabolomics
(4087)
Methylation profiling
(3018)
Models
(2001)
Genomic
(765)
Multiomics
(380)
Microarray
(1)
Organisms
Homo sapiens
(71461)
Mus musculus
(48692)
Arabidopsis thaliana
(4918)
Drosophila melanogaster
(4356)
Rattus norvegicus
(4235)
Saccharomyces cerevisiae
(3139)
Escherichia coli
(989)
Schizosaccharomyces pombe
(692)
Canis lupus familiaris
(411)
Plasmodium falciparum
(266)
Xenopus laevis
(249)
Mycobacterium tuberculosis
(238)
cellular organisms
(194)
Oryctolagus cuniculus
(142)
Neurospora crassa
(93)
Mammalia
(66)
Severe acute respiratory syndrome coronavirus 2
(62)
Trypanosoma brucei
(62)
Rattus
(48)
Cavia porcellus
(35)
Arabidopsis
(25)
Mus
(20)
Eukaryota
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Yarrowia lipolytica
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Mus sp.
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Chordata
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Methanosarcina barkeri
(4)
Aves
(4)
Vertebrata
(4)
Organisms
Homo sapiens
(49583)
Mus musculus
(36313)
Arabidopsis thaliana
(2693)
Rattus norvegicus
(2659)
Drosophila melanogaster
(1922)
Saccharomyces cerevisiae
(1793)
Danio rerio
(1334)
Panicum virgatum
(1082)
Caenorhabditis elegans
(926)
Escherichia coli
(815)
soil metagenome
(796)
Sus scrofa
(708)
Bos taurus
(665)
Gallus gallus
(549)
Oryza sativa
(508)
Sorghum bicolor
(466)
Glycine max
(444)
Brachypodium distachyon
(368)
Zea mays
(351)
human gut metagenome
(338)
Staphylococcus aureus
(330)
hot springs metagenome
(311)
Schizosaccharomyces pombe
(299)
Macaca mulatta
(297)
Canis lupus familiaris
(277)
mouse gut metagenome
(249)
Pseudomonas aeruginosa
(247)
Solanum lycopersicum
(242)
Populus trichocarpa
(241)
Physcomitrium patens
(230)
Repository
ENA
(208892)
geo
(97078)
biostudies-arrayexpress
(56963)
pride
(35204)
EGA
(4353)
MassIVE
(3555)
MetaboLights
(3292)
iProX
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BioModels
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jPOST
(1578)
PAXDB
(960)
dbGaP
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GNPS
(754)
PeptideAtlas
(510)
PanoramaPublic
(324)
LINCS
(289)
GPMDB
(235)
EVA
(123)
NODE
(116)
Cell Collective
(63)
PMR
(50)
ExpressionAtlas
(37)
FAIRDOMHub
(33)
MetabolomicsWorkbench
(20)
Tissue
Liver
(1071)
Blood
(813)
Leaf
(785)
Lung
(585)
Skin
(387)
Breast
(131)
Pancreas
(128)
Seed
(119)
Feces
(85)
Cell line
(20)
Cerebral cortex
(18)
Blood
(10)
Liver
(9)
Mixture
(5)
Prostate
(5)
Leaf
(4)
Root
(4)
Solvent
(4)
Cultured cells
(3)
Feces
(3)
Urine
(3)
Vaginal secretion
(2)
Gut microbiota
(2)
PBMC
(2)
Hippocampal formation
(1)
Skin
(1)
Cecum
(1)
Plant
(1)
Leaf,stem,bark
(1)
Root,leaf,fruit
(1)
Disease
Alzheimer's disease
(257)
Normal
(224)
Parkinson's disease
(167)
COVID-19
(142)
Multiple myeloma
(85)
Cancer
(45)
Osteoarthritis
(39)
Diabetes mellitus
(33)
Neurodegenerative disease
(19)
Colorectal carcinoma
(13)
Hypertension
(7)
Acute promyelocytic leukemia
(5)
Healthy
(4)
Disease by infectious agent
(4)
Adenoma
(2)
Secondary progressive multiple sclerosis
(1)
Uveal Melanoma
(1)
X-linked hyper-IgM syndrome
(1)
Bronchopulmonary dysplasia
(1)
Vitiligo
(1)
COPD
(1)
Klinefelter's syndrome
(1)
Polyoma virus nephropathy
(1)
T-cell mediated transplant rejection
(1)
Interstitial fibrosis and tubular atrophy
(1)
BK viremia
(1)
Meningeal tuberculosis
(1)
Alzheimers disease
(1)
Sepsis
(1)
Control
(1)
Technology Type
Illumina HiSeq 2000
(129)
Illumina HiSeq 2500
(25)
ILLUMINA, Illumina HiSeq 2000
(24)
Illumina HiSeq 2000, ILLUMINA
(19)
Illumina HiSeq 2500, ILLUMINA
(16)
Illumina MiSeq
(15)
ILLUMINA, Illumina HiSeq 2500
(14)
Illumina Genome Analyzer II
(14)
Illumina Genome Analyzer II, Illumina HiSeq 2000
(11)
Unknown, Affymetrix 500K
(11)
Illumina 15K
(8)
Illumina
(7)
Illumina HiSeq 2500, Illumina HiSeq 2000
(6)
Affymetrix 500K, unknown
(6)
Illumina MiSeq, ILLUMINA
(4)
HiSeq X Ten, ILLUMINA
(4)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000
(4)
AB SOLiD 4 System
(4)
Illumina HiSeq 2000, Illumina Genome Analyzer II
(4)
Unknown
(4)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten
(3)
Illumina HiSeq 4000, ILLUMINA
(3)
HiSeq X Ten
(3)
Illumina Human Omni5 Bead Chip
(2)
NextSeq 500, ILLUMINA
(2)
OXFORD_NANOPORE, MinION
(2)
ILLUMINA, Illumina HiSeq 4000
(2)
ILLUMINA, HiSeq X Ten
(2)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500
(2)
ILLUMINA, NextSeq 500
(2)
Instrument Platform
Illumina NovaSeq 6000
(1448)
NextSeq 500
(1022)
Illumina HiSeq 2500
(902)
Illumina HiSeq 2000
(881)
Illumina HiSeq 4000
(710)
Illumina MiSeq
(244)
NextSeq 550
(226)
NextSeq 2000
(181)
Illumina NovaSeq X
(144)
Illumina HiSeq 1500
(135)
Illumina Genome Analyzer IIx
(122)
Illumina Genome Analyzer II
(114)
BGISEQ-500
(114)
Illumina HiSeq 3000
(88)
HiSeq X Ten
(82)
DNBSEQ-T7
(72)
Scanning hardware
(58)
DNBSEQ-G400
(55)
GenePix 4000B [Axon Instruments]
(51)
Illumina HiSeq 1000
(50)
NA
(47)
Axon GenePix 4000B scanning hardware
(40)
Ion Torrent Proton
(40)
Axon- GenePix4000B
(35)
GenePix 4000A [Axon Instruments]
(31)
G2565BA DNA microarray scanner [Agilent]
(27)
MinION
(27)
Affymetrix GeneChip Scanner 3000 7G
(25)
AB SOLiD 4 System
(25)
418 [Affymetrix]
(25)
Publication Date
2025
(19743)
2026
(17511)
2024
(16825)
2023
(14010)
2022
(13089)
2021
(11895)
2014
(10440)
2013
(10388)
2020
(10279)
2015
(10243)
2016
(8672)
2012
(8660)
2010
(8395)
2019
(8224)
2011
(7785)
2018
(7219)
2017
(6379)
2008
(4494)
2009
(3971)
2007
(2398)
2005
(1374)
2006
(1223)
2004
(444)
2003
(139)
2002
(30)
2027
(8)
2001
(7)
UNIPROT ID/AC
P04049
(36)
Q02750
(36)
P28482
(29)
P04637
(26)
P01137
(23)
P27361
(22)
P00533
(21)
Q15796
(21)
Q13485
(21)
P36897
(21)
P01133
(20)
Q07889
(20)
P31749
(19)
P37173
(18)
P60484
(17)
P62993
(16)
P12259
(15)
P49841
(15)
Q00987
(15)
O15105
(14)
P00742
(14)
P00734
(14)
P01008
(13)
P00451
(13)
P00740
(13)
P13726
(13)
P24864
(13)
P01112
(13)
P20936
(13)
P10646
(12)
ENSEMBL ID
ENSG00000064012
(4)
ENSG00000077150
(4)
ENSG00000165661
(4)
ENSG00000176654
(4)
ENSG00000204531
(4)
ENSG00000141510
(3)
ENSG00000135679
(3)
ENSG00000151552
(2)
ENSG00000142319
(2)
ENSG00000093010
(2)
ENSG00000180176
(2)
ENSG00000111275
(2)
ENSG00000132437
(2)
ENSG00000149968
(2)
ENSG00000124253
(2)
ENSG00000131482
(2)
ENSG00000148200
(2)
ENSG00000165556
(2)
ENSG00000141448
(2)
ENSMUST00000021413
(2)
ENSMUST00000019997
(2)
ENSG00000139318
(1)
ENSG00000168646
(1)
ENST00000261769
(1)
ENST00000227507
(1)
ENST00000242261
(1)
ENST00000263341
(1)
ENSG00000167720
(1)
ENSG00000167701
(1)
ENSG00000167699
(1)
CHEBI ID
CHEBI:15428
(661)
CHEBI:16335
(600)
CHEBI:16027
(486)
CHEBI:17895
(486)
CHEBI:17754
(440)
CHEBI:18050
(427)
CHEBI:16828
(425)
CHEBI:17191
(420)
CHEBI:17115
(386)
CHEBI:16761
(363)
CHEBI:16680
(341)
CHEBI:15422
(334)
CHEBI:17256
(299)
CHEBI:15846
(272)
CHEBI:29033
(195)
CHEBI:29034
(191)
CHEBI:16526
(167)
CHEBI:27402
(157)
CHEBI:15343
(156)
CHEBI:16236
(155)
CHEBI:17411
(153)
CHEBI:18020
(149)
CHEBI:1463
(149)
CHEBI:15377
(149)
CHEBI:16240
(148)
CHEBI:27931
(147)
CHEBI:16480
(146)
CHEBI:16908
(144)
CHEBI:18191
(139)
CHEBI:15379
(139)
Metabolite Name
Hypoxanthine
(527)
Creatine
(486)
Taurine
(469)
Adenosine
(468)
Uridine
(466)
Adenine
(460)
Uracil
(453)
Inosine
(443)
Creatinine
(440)
L-Phenylalanine
(412)
Choline
(403)
L-Tyrosine
(395)
Xanthine
(394)
Guanosine
(391)
Betaine
(381)
Cytidine
(361)
L-Tryptophan
(360)
Guanine
(358)
L-Histidine
(353)
Citric acid
(347)
Cytosine
(335)
L-Proline
(333)
Glycine
(329)
L-Glutamine
(319)
Ornithine
(314)
Azelaic acid
(312)
L-Valine
(312)
Pantothenic acid
(307)
Thymine
(302)
Riboflavin
(300)
First Public Date
2025
(28165)
2024
(24157)
2026
(23858)
2014
(21346)
2023
(18233)
2022
(15175)
2021
(14189)
2020
(12980)
2019
(11547)
2017
(10426)
2018
(9008)
2013
(7937)
2015
(5943)
2016
(5582)
2012
(183)
2011
(99)
2010
(64)
Modelling Approach
Ordinary differential equation model
(1079)
Constraint-based model
(280)
Other
(49)
Computational model
(29)
Logical model
(28)
Machine learning
(21)
Differential equation model
(18)
Population model
(16)
Mathematical model
(14)
Boolean model
(11)
Petri net
(10)
Metabolic network
(9)
Physiologically based pharmacokinetic model
(8)
Delayed differential equation model
(7)
Agent-based model
(6)
Partial differential equation model
(5)
Deep learning
(3)
Finite element spatial model
(3)
Steady-state model
(3)
Dynamical characteristic
(2)
Spatial characteristic
(2)
Differential algebraic equation model
(2)
Stochastic differential equation model
(2)
Markov model
(1)
Fuzzy logic model
(1)
Neural network
(1)
Support-vector machine
(1)
Regression method
(1)
Multi-value logic model
(1)
Rule-based model
(1)
Study status
Completed
(1916)
Recruiting
(1194)
Not provided
(565)
Active, not recruiting
(374)
Not yet recruiting
(346)
Terminated
(344)
Withdrawn
(104)
Ongoing
(47)
Enrolling by invitation
(31)
Suspended
(18)
Available
(2)
Other
(1)
Lab affiliation
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry
(139)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
(130)
EDyP
(98)
Head of the Curie Institute Mass Spectrometry Platform
(83)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic
(73)
Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States
(60)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
(59)
University of Edinburgh
(55)
The University of Melbourne
(54)
University of Victoria
(47)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands
(44)
Head of Proteomics
(43)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States
(41)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark
(40)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany
(36)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720
(32)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany
(32)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany
(31)
Utrecht University
(31)
Functional Proteomics, ICR
(31)
Instituto de Investigaciones Sanitarias de Santiago de Compostela
(30)
University Hospital Cologne
(30)
Harvard Medical School
(28)
IRCCS Istituto G Gaslini
(28)
Wageningen University
(28)
Institute of Molecular Biology (IMB)
(28)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands
(27)
Moffitt Cancer Center Tampa, FL, USA
(27)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia
(27)
ETH Zurich, Institute of Molecular Systems Biology, Zurich, Switzerland
(26)
Tags
pathogen
(8752)
pathogen:bacterium
(6446)
pathogen:fungus
(1006)
pathogen:protozoan
(648)
pathogen:virus
(538)
xref:PubMed:33911273
(252)
covid19
(219)
wastewater
(115)
pathogen:helminth
(114)
xref:PubMed:34616061
(94)
xref:PubMed:24402126
(59)
xref:PubMed:22387117
(58)
xref:PubMed:23189272
(58)
xref:PubMed:40240601
(36)
xref:PubMed:18160043
(31)
xref:PubMed:28160295
(24)
xref:PubMed:23935484
(24)
xref:PubMed:32075271
(23)
xref:PubMed:29104227
(23)
xref:PubMed:22470468
(22)
xref:PubMed:31073985
(22)
xref:PubMed:16626502
(21)
xref:PubMed:19903760
(20)
xref:PubMed:19846608
(20)
xref:PubMed:42225060
(19)
xref:PubMed:41237776
(18)
xref:PubMed:30830251
(18)
xref:PubMed:30705266
(17)
xref:PubMed:26391192
(16)
xref:PubMed:23045667
(16)
Keyword
Oxaliplatin
(357)
Irinotecan
(330)
Fluorouracil
(311)
Bevacizumab
(308)
Leucovorin
(303)
Cetuximab
(229)
Capecitabine
(227)
Levoleucovorin
(196)
Stage IV colon cancer
(129)
Stage IV rectal cancer
(125)
Pembrolizumab
(123)
Colonoscopy
(114)
Recurrent colon cancer
(112)
Calcium
(108)
Recurrent rectal cancer
(104)
Antibodies, Monoclonal
(92)
Nivolumab
(90)
Antibodies
(89)
Adenocarcinoma of the rectum
(85)
Panitumumab
(84)
Colorectal
(79)
Immunotherapy
(75)
Adenocarcinoma of the colon
(73)
Stage III rectal cancer
(65)
Immunoglobulins
(64)
Metastatic
(61)
Stage III colon cancer
(61)
Screening
(61)
Antineoplastic Agents, Immunological
(58)
Chemotherapy
(55)
IsPrivate
False
(1855)
Model Flag
Non Kinetic
(346)
Non Miriam
(9)
Sbml Extended
(3)
Submitter Keywords
Machine Learning Model
(73)
Immuno-oncology
(65)
FROG
(61)
Ersilia
(48)
FAIR-AIML
(43)
Not Peer Reviewed
(40)
COVID-19
(17)
Manuscript Accepted
(8)
Oncology
(5)
TransQST
(5)
Classification
bacteria
(6446)
fungi
(1006)
protozoa
(648)
viruses
(538)
helminths
(114)
Modification
4x(15)N labeled L-arginine
(85)
2x(15)N labeled L-lysine
(76)
15.994915
(66)
N6
(55)
57.021464
(55)
4-tetrahydrothiazine-3-carboxylic acid
(55)
Not available
(53)
N6-dimethyl-L-lysine
(37)
42.010565
(36)
-17.026549
(32)
4x(2)H labeled dimethylated residue
(14)
-18.010565
(14)
4
(11)
45.029395
(10)
79.966331
(10)
+3amu)
(10)
58.005479
(7)
57.02146
(7)
15.99491
(7)
6x(2)H labeled dimethylated L-arginine
(6)
6.020129
(5)
56.026215
(5)
10.008269
(5)
0.984
(5)
0.984016
(4)
3x(2)H labeled N6-acetyl-L-lysine
(4)
71.037114
(4)
4x(2)H labeled dimethylated L-lysine
(4)
Methionine
(2)
57.0215
(2)
Study type
Transcription profiling by array
(33618)
RNA-seq of coding RNA
(7338)
ChIP-seq
(3438)
Comparative genomic hybridization by array
(1455)
ChIP-chip by tiling array
(1272)
RNA-seq of non coding RNA
(1173)
Unknown experiment type
(1075)
Methylation profiling by array
(979)
Other
(830)
RNA-seq of coding RNA from single cells
(824)
Methylation profiling by high throughput sequencing
(590)
DNA-seq
(460)
ChIP-chip by array
(376)
Transcription profiling by tiling array
(344)
RNA-seq of total RNA
(304)
Genotyping by array
(303)
Transcription profiling by RT-PCR
(246)
MicroRNA profiling by array
(230)
Cell line - High-throughput sequencing
(203)
Proteomic profiling by array
(155)
Animal - High-throughput sequencing
(148)
ATAC-seq
(113)
Transcription profiling by SAGE
(111)
High-throughput sequencing
(106)
RNAi profiling by array
(91)
Genotyping by high throughput sequencing
(89)
Human - High-throughput sequencing
(80)
MicroRNA profiling by high throughput sequencing
(67)
RIP-seq
(56)
Animal - One-color microarray
(47)
Release Date
2022
(224230)
2025
(202268)
2023
(201878)
2021
(195848)
2024
(173428)
2020
(155029)
2019
(121259)
2018
(106271)
2017
(89012)
2016
(80131)
2015
(71223)
2014
(61247)
2013
(45920)
2012
(39056)
2011
(33419)
2010
(29520)
2026
(27545)
2009
(20952)
2008
(17616)
2007
(11016)
2006
(8309)
2005
(6574)
2004
(4373)
2003
(3430)
2002
(2716)
2001
(2344)
2000
(2065)
1999
(1565)
1998
(1396)
1997
(428)
Location
United States
(1498)
China
(565)
France
(436)
United Kingdom
(412)
Spain
(374)
Italy
(356)
Australia
(342)
Germany
(315)
Japan
(308)
Canada
(260)
Netherlands
(228)
Belgium
(222)
South Korea
(188)
Denmark
(141)
Taiwan
(114)
Sweden
(109)
Austria
(99)
Poland
(91)
Switzerland
(73)
Israel
(72)
Czechia
(68)
Russia
(67)
India
(66)
Hungary
(62)
Brazil
(61)
Hong Kong
(60)
Turkey
(59)
Norway
(55)
Singapore
(55)
New Zealand
(51)
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Bacteriovorax sp. As-1 isolate:As-1
Bacteriovorax sp. As-1 isolate:As-1 Genome sequencing
PRJNA1231729
|
ENA
Cite
Pseudarthrobacter sp. As-47
Pseudarthrobacter sp. As-47 Genome sequencing
PRJNA1459012
|
ENA
Cite
Pseudarthrobacter sp. As-47
Pseudarthrobacter sp. As-47 Genome sequencing
PRJNA1463522
|
ENA
Cite
Pseudarthrobacter sp. As-47
Pseudarthrobacter sp. As-47 Genome sequencing
PRJNA1475143
|
ENA
Cite
Aspergillus oryzae AS 3.951
Draft Genome Sequencing of Aspergillus oryzae AS 3.951
PRJNA89727
|
ENA
Cite
Pantoea sp. AS-PWVM4
Pantoea sp. AS-PWVM4 Genome sequencing and assembly
PRJNA202228
|
ENA
Cite
Aspergillus oryzae AS 3.863
Draft Genome Sequencing of Aspergillus oryzae AS 3.863
PRJNA138081
|
ENA
Cite
Enterobacter sp. AS-1
Genome sequencing of a eurytrophic recombinant host Enterobacter sp. strain AS-1
PRJDB10378
|
ENA
Cite
Alcanivorax sp. AS-5
Alcanivorax sp. AS-5 Genome sequencing
PRJNA161067
|
ENA
Cite
Stenotrophomonas sp. As-7
Stenotrophomonas sp. As-7 Genome sequencing
PRJNA978933
|
ENA
Cite
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