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Unknown
(1317994)
Genomics
(203880)
Transcriptomics
(104674)
Proteomics
(42065)
Other
(4502)
Metabolomics
(4495)
Methylation profiling
(2490)
Clinical
(2306)
Models
(1081)
Genomic
(755)
Multiomics
(163)
Microarray
(4)
Organisms
Homo sapiens
(51578)
Mus musculus
(39667)
Arabidopsis thaliana
(5017)
Rattus norvegicus
(3868)
Drosophila melanogaster
(3862)
Saccharomyces cerevisiae
(3341)
Escherichia coli
(867)
Canis lupus familiaris
(309)
Xenopus laevis
(237)
Escherichia coli K-12
(171)
Bacillus subtilis
(154)
Oryctolagus cuniculus
(118)
cellular organisms
(112)
Neurospora crassa
(97)
Mammalia
(48)
Rattus
(39)
Severe acute respiratory syndrome coronavirus 2
(29)
Cavia porcellus
(22)
Halobacterium salinarum
(17)
Felis catus
(17)
Eukaryota
(13)
Mus
(13)
Arabidopsis
(7)
Metazoa
(7)
Chordata
(4)
Mus sp.
(3)
Murinae
(3)
Embryophyta
(3)
Ostreococcus tauri
(2)
Candidatus Palibaumannia cicadellinicola
(2)
Organisms
Homo sapiens
(36576)
Mus musculus
(33154)
Arabidopsis thaliana
(2799)
soil metagenome
(2617)
Rattus norvegicus
(2565)
Saccharomyces cerevisiae
(1930)
Drosophila melanogaster
(1810)
Danio rerio
(1658)
Neurospora crassa
(1173)
Brassica rapa
(985)
Caenorhabditis elegans
(966)
Escherichia coli
(770)
Sus scrofa
(764)
Bos taurus
(751)
Oryza sativa
(636)
bioreactor metagenome
(621)
Gallus gallus
(613)
Populus trichocarpa
(574)
root metagenome
(486)
hot springs metagenome
(472)
Sorghum bicolor
(438)
pond metagenome
(430)
Zea mays
(398)
Schizosaccharomyces pombe
(371)
Staphylococcus aureus
(342)
Chlamydomonas reinhardtii
(330)
rhizosphere metagenome
(325)
Macaca mulatta
(315)
Panicum virgatum
(314)
human gut metagenome
(302)
Repository
ENA
(183074)
geo
(65064)
biostudies-arrayexpress
(63935)
pride
(36123)
MetaboLights
(3471)
EGA
(3217)
MassIVE
(2573)
iProX
(1678)
BioModels
(1006)
GNPS
(929)
jPOST
(787)
dbGaP
(755)
PeptideAtlas
(401)
NODE
(285)
PAXDB
(253)
LINCS
(212)
ExpressionAtlas
(176)
GPMDB
(103)
EVA
(100)
MetabolomicsWorkbench
(68)
FAIRDOMHub
(50)
Cell Collective
(13)
PMR
(12)
Tissue
Liver
(1078)
Blood
(847)
Leaf
(793)
Lung
(615)
Root
(332)
Seed
(7)
Pericarp
(5)
Inflorescence
(3)
Flower bud
(3)
Flower
(3)
Shoot
(3)
Endosperm
(3)
Ileum
(3)
Triceps
(2)
Gastrocnemius
(2)
Plant embryo
(2)
Whole organism
(2)
Aleurone layer
(2)
Central endosperm
(2)
Adrenal gland
(2)
Posterior foreleg
(1)
Posterior forewing
(1)
Corticospinal tract
(1)
Callosal sulcus
(1)
Brain cortex
(1)
Developing leaf insertions
(1)
Mature leaf
(1)
Root early differentiation region
(1)
Root meristematic region
(1)
Root promeristem and cap
(1)
Disease
Normal
(254)
Melanoma
(152)
Glioblastoma
(109)
Non-small cell lung carcinoma
(94)
Hepatocellular carcinoma
(88)
Lung adenocarcinoma
(69)
Colon carcinoma
(6)
Breast adenocarcinoma
(6)
Acute lymphoblastic leukemia
(5)
Ovarian carcinoma
(3)
Renal adenocarcinoma
(2)
Renal carcinoma
(2)
Large cell lung carcinoma
(2)
Pancreatic adenocarcinoma
(2)
Cervical adenocarcinoma
(2)
Gastric adenocarcinoma
(2)
Squamous cell lung carcinoma
(2)
Ovarian adenocarcinoma
(2)
Meningococcal sepsis
(1)
Biliary atresia
(1)
Intrahepatic cholestasis
(1)
Poorly differentiated hypernephroma
(1)
AIDs related Burkitts lymphoma
(1)
Adenocarcinoma prostate PC-3 subline isolated from liver metastasis in mice
(1)
Adenocarcinoma of prostate
(1)
Chronic myelogenous (blast crisis) leukemia
(1)
Poorly differentiated B cell origin leukemia
(1)
Acute lymphoblastic (T-ALL) leukemia
(1)
Adenocarcinoma of lung
(1)
Carcinoma, renal cell
(1)
Technology Type
Illumina HiSeq 2000
(113)
ILLUMINA, Illumina HiSeq 2000
(13)
Illumina HiSeq 2500, ILLUMINA
(11)
Unknown, Affymetrix 500K
(11)
Illumina HiSeq 2500
(9)
Illumina MiSeq
(9)
Illumina HiSeq 2000, ILLUMINA
(9)
ILLUMINA, Illumina HiSeq 2500
(8)
Illumina 15K
(8)
Illumina Genome Analyzer II, Illumina HiSeq 2000
(8)
Affymetrix 500K, unknown
(6)
Illumina Genome Analyzer II
(6)
ILLUMINA, NextSeq 500
(5)
Illumina MiSeq, ILLUMINA
(4)
HiSeq X Ten, ILLUMINA
(4)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000
(4)
HiSeq X Ten
(3)
Illumina HiSeq 2500, Illumina HiSeq 2000
(3)
Illumina HiSeq 2000, Illumina Genome Analyzer II
(3)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA
(2)
Illumina Human Omni5 Bead Chip
(2)
ILLUMINA, Illumina HiSeq 4000
(2)
Illumina HiSeq 4000, ILLUMINA
(2)
Illumina 450K
(2)
Affymetrix SNP 6.0
(2)
Illumina 450k
(2)
Illumina_450K
(2)
Illumina HiSeq 2000, Illumina MiSeq
(2)
454 GS FLX Titanium, Illumina HiSeq 2000
(2)
Illumina
(2)
Instrument Platform
Illumina NovaSeq 6000
(1806)
NextSeq 500
(1171)
Illumina HiSeq 2500
(1128)
Illumina HiSeq 2000
(1053)
Illumina HiSeq 4000
(808)
NextSeq 550
(279)
Illumina MiSeq
(264)
NextSeq 2000
(202)
Illumina NovaSeq X
(185)
Illumina HiSeq 1500
(139)
BGISEQ-500
(131)
Illumina Genome Analyzer IIx
(124)
Illumina HiSeq 3000
(117)
Illumina Genome Analyzer II
(115)
HiSeq X Ten
(89)
DNBSEQ-T7
(77)
Scanning hardware
(71)
DNBSEQ-G400
(64)
GenePix 4000B [Axon Instruments]
(56)
NA
(55)
Illumina HiSeq 1000
(55)
Axon GenePix 4000B scanning hardware
(50)
Axon- GenePix4000B
(41)
Ion Torrent Proton
(39)
GenePix 4000A [Axon Instruments]
(34)
AB SOLiD 4 System
(30)
G2565BA DNA microarray scanner [Agilent]
(29)
418 [Affymetrix]
(28)
PromethION
(26)
N/A
(26)
Publication Date
2025
(14906)
2026
(12686)
2024
(12556)
2023
(11401)
2022
(11268)
2013
(10401)
2014
(10274)
2015
(10025)
2021
(9967)
2012
(8422)
2020
(8398)
2010
(8397)
2016
(8023)
2011
(7844)
2019
(6844)
2018
(6104)
2017
(5242)
2008
(4249)
2009
(3864)
2007
(2319)
2005
(1336)
2006
(1132)
2004
(538)
2003
(166)
2002
(34)
2027
(8)
2001
(5)
UNIPROT ID/AC
P21399
(69)
P00390
(67)
P37268
(67)
P14618
(67)
Q99714
(67)
Q9NS82
(67)
O95477
(67)
P17174
(67)
P36969
(67)
P30613
(67)
Q01581
(67)
P00374
(67)
Q9BQG2
(66)
B3KXN9
(66)
Q53HM1
(66)
Q86SK9
(66)
E9KL42
(66)
Q3I5F7
(66)
P33897
(66)
Q99884
(66)
A8MU28
(66)
P35219
(66)
Q5FC00
(66)
Q15274
(66)
Q9NX14
(66)
Q9Y345
(66)
Q86YT5
(66)
Q53H96
(66)
Q9NWU1
(66)
Q96C36
(66)
ENSEMBL ID
ENSG00000064012
(4)
ENSG00000141510
(3)
ENSG00000135679
(3)
ENSG00000165661
(2)
ENSG00000176654
(2)
ENSG00000204531
(2)
ENSMUST00000021413
(2)
ENSMUST00000019997
(2)
ENSG00000151468
(1)
ENSG00000100234
(1)
ENSG00000102265
(1)
ENSG00000184557
(1)
ENSG00000137745
(1)
ENSG00000196611
(1)
ENSG00000177606
(1)
ENSG00000170345
(1)
ENSG00000158859
(1)
ENSP00000345571
(1)
ENSG00000101412
(1)
ENST00000343380
(1)
ENST00000299613
(1)
ENST00000450114
(1)
ENSG00000003402
(1)
ENSG00000171791
(1)
ENST00000333681.5
(1)
ENSSSCT00065044848.1
(1)
ENST00000371199.8
(1)
ENST00000612899.5
(1)
ENSG00000101966
(1)
ENST00000216797.10
(1)
CHEBI ID
CHEBI:15428
(661)
CHEBI:16704
(589)
CHEBI:16708
(545)
CHEBI:17568
(537)
CHEBI:17268
(488)
CHEBI:17562
(458)
CHEBI:17754
(432)
CHEBI:16857
(432)
CHEBI:16414
(426)
CHEBI:18050
(415)
CHEBI:16828
(408)
CHEBI:17191
(407)
CHEBI:15971
(394)
CHEBI:16977
(382)
CHEBI:16643
(381)
CHEBI:17115
(371)
CHEBI:16761
(355)
CHEBI:17196
(348)
CHEBI:16680
(324)
CHEBI:16450
(316)
CHEBI:17172
(289)
CHEBI:16526
(129)
CHEBI:15343
(126)
CHEBI:18021
(121)
CHEBI:16240
(119)
CHEBI:15699
(118)
CHEBI:17561
(117)
CHEBI:15377
(117)
CHEBI:18191
(115)
CHEBI:17544
(115)
Metabolite Name
Hypoxanthine
(562)
Creatine
(525)
Adenosine
(500)
Taurine
(497)
Uridine
(493)
Adenine
(491)
Uracil
(478)
Creatinine
(470)
Inosine
(468)
Choline
(437)
L-Phenylalanine
(436)
L-Tyrosine
(426)
Guanosine
(425)
Xanthine
(413)
Betaine
(403)
Cytidine
(384)
L-Tryptophan
(379)
Guanine
(377)
L-Histidine
(374)
Citric acid
(372)
Cytosine
(361)
L-Proline
(351)
L-Glutamine
(342)
Glycine
(341)
L-Valine
(335)
Azelaic acid
(331)
Ornithine
(330)
Pantothenic acid
(323)
Thymine
(322)
Riboflavin
(321)
First Public Date
2025
(22076)
2014
(20337)
2024
(20215)
2026
(20136)
2023
(15227)
2022
(13312)
2020
(13006)
2021
(12069)
2019
(11217)
2018
(9193)
2017
(8522)
2013
(6755)
2015
(6106)
2016
(4626)
2012
(165)
2011
(70)
2010
(42)
Modelling Approach
Ordinary differential equation model
(628)
Constraint-based model
(65)
Computational model
(18)
Population model
(13)
Logical model
(10)
Differential equation model
(9)
Machine learning
(7)
Other
(7)
Delayed differential equation model
(6)
Petri net
(5)
Boolean model
(5)
Agent-based model
(4)
Deep learning
(3)
Mathematical model
(3)
Physiologically based pharmacokinetic model
(3)
Cellular potts model
(3)
Pharmacodynamics model
(2)
Steady-state model
(2)
Partial differential equation model
(2)
Metabolic network
(2)
Support-vector machine
(1)
Dynamical characteristic
(1)
Spatial characteristic
(1)
Biochemical network
(1)
Markov chain
(1)
Differential algebraic equation model
(1)
Stochastic differential equation model
(1)
Study status
Completed
(974)
Recruiting
(542)
Not yet recruiting
(206)
Not provided
(199)
Active, not recruiting
(153)
Terminated
(131)
Withdrawn
(40)
Ongoing
(35)
Enrolling by invitation
(16)
Suspended
(7)
Other
(2)
No longer available
(1)
Lab affiliation
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry
(138)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
(130)
EDyP
(99)
Head of the Curie Institute Mass Spectrometry Platform
(83)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic
(67)
Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States
(60)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
(58)
The University of Melbourne
(55)
University of Edinburgh
(54)
Wageningen University
(52)
University of Victoria
(49)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720
(46)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands
(45)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States
(43)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark
(41)
Head of Proteomics
(37)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany
(36)
Functional Proteomics, ICR
(32)
University of Oxford
(32)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany
(31)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München
(31)
Pacific Northwest National Laboratory
(30)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany
(29)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia
(29)
Harvard Medical School
(29)
Instituto de Investigaciones Sanitarias de Santiago de Compostela
(29)
Utrecht University
(29)
Vanderbilt University
(29)
IRCCS Istituto G Gaslini
(28)
The Institute of Cancer Research
(28)
Tags
pathogen
(7623)
pathogen:bacterium
(5477)
pathogen:fungus
(978)
xref:PubMed:33911273
(662)
pathogen:protozoan
(599)
pathogen:virus
(478)
covid19
(190)
pathogen:helminth
(91)
xref:PubMed:28888135
(72)
wastewater
(71)
xref:PubMed:18337718
(60)
xref:PubMed:29166127
(60)
xref:PubMed:24402126
(59)
xref:PubMed:22387117
(58)
xref:PubMed:23189272
(58)
xref:PubMed:21054499
(41)
xref:PubMed:28385888
(36)
xref:PubMed:38565538
(35)
xref:PubMed:18160043
(35)
xref:PubMed:30144646
(29)
xref:PubMed:35007854
(28)
xref:PubMed:29413636
(28)
xref:PubMed:16626502
(25)
xref:PubMed:37068444
(23)
xref:PubMed:32075271
(23)
xref:PubMed:29104227
(23)
xref:PubMed:22470468
(22)
xref:PubMed:31073985
(22)
xref:PubMed:22491847
(21)
xref:PubMed:41618141
(20)
Keyword
Bevacizumab
(93)
Oxaliplatin
(86)
Irinotecan
(76)
Fluorouracil
(71)
Leucovorin
(70)
Cetuximab
(62)
Capecitabine
(56)
Colonoscopy
(48)
Screening
(37)
Levoleucovorin
(35)
Colorectal
(33)
Pembrolizumab
(31)
Metastatic
(29)
Panitumumab
(24)
Nivolumab
(23)
Rectal cancer
(20)
Chemotherapy
(20)
Folic Acid
(19)
Durvalumab
(18)
CRC
(18)
Metastatic colorectal cancer
(16)
Immunotherapy
(16)
Stage IV colon cancer
(15)
Prevention
(14)
Colorectal Cancer Screening
(14)
Aspirin
(14)
Antibodies
(14)
Antibodies, Monoclonal
(14)
Atezolizumab
(13)
Stage III colon cancer
(13)
IsPrivate
False
(1006)
Model Flag
Non Kinetic
(206)
Non Miriam
(9)
Sbml Extended
(2)
Submitter Keywords
Immuno-oncology
(33)
Machine Learning Model
(27)
Ersilia
(24)
FAIR-AIML
(19)
FROG
(17)
Not Peer Reviewed
(14)
COVID-19
(14)
TransQST
(6)
Manuscript Accepted
(5)
Classification
bacteria
(5477)
fungi
(978)
protozoa
(599)
viruses
(478)
helminths
(91)
Modification
4x(15)N labeled L-arginine
(79)
2x(15)N labeled L-lysine
(74)
4-tetrahydrothiazine-3-carboxylic acid
(62)
15.994915
(60)
57.021464
(52)
Not available
(50)
N6
(48)
N6-dimethyl-L-lysine
(34)
42.010565
(31)
-17.026549
(26)
4x(2)H labeled dimethylated residue
(13)
+3amu)
(11)
-18.010565
(11)
4
(11)
45.029395
(10)
79.966331
(9)
15.99491
(8)
57.02146
(8)
10.008269
(6)
58.005479
(6)
0.984016
(5)
4x(2)H labeled dimethylated L-lysine
(5)
6x(2)H labeled dimethylated L-arginine
(5)
0.984
(4)
3x(2)H labeled N6-acetyl-L-lysine
(4)
56.026215
(4)
6.020129
(4)
71.037114
(4)
4'-dihydroxyphenylalanine
(2)
43.00581
(2)
Study type
Transcription profiling by array
(38426)
RNA-seq of coding RNA
(8215)
ChIP-seq
(3914)
Comparative genomic hybridization by array
(1484)
ChIP-chip by tiling array
(1325)
RNA-seq of non coding RNA
(1137)
Unknown experiment type
(1099)
Methylation profiling by array
(956)
RNA-seq of coding RNA from single cells
(931)
Other
(907)
Methylation profiling by high throughput sequencing
(633)
DNA-seq
(516)
ChIP-chip by array
(412)
Transcription profiling by tiling array
(401)
RNA-seq of total RNA
(362)
MicroRNA profiling by array
(291)
Genotyping by array
(289)
Transcription profiling by RT-PCR
(227)
Cell line - High-throughput sequencing
(197)
Animal - High-throughput sequencing
(192)
Proteomic profiling by array
(181)
High-throughput sequencing
(136)
ATAC-seq
(136)
RNAi profiling by array
(99)
Transcription profiling by SAGE
(97)
Genotyping by high throughput sequencing
(92)
Human - High-throughput sequencing
(74)
MicroRNA profiling by high throughput sequencing
(68)
Plant - High-throughput sequencing
(64)
RIP-seq
(62)
Release Date
2022
(156113)
2023
(139114)
2021
(136469)
2025
(132245)
2024
(116644)
2020
(108012)
2019
(87321)
2018
(76856)
2017
(64302)
2016
(59328)
2015
(53921)
2014
(47313)
2013
(36618)
2012
(30640)
2011
(26928)
2010
(24430)
2026
(18568)
2009
(16909)
2008
(14408)
2007
(8944)
2006
(6645)
2005
(5248)
2004
(3460)
2003
(2674)
2002
(2099)
2001
(1878)
2000
(1707)
1999
(1288)
1998
(1115)
1997
(347)
Location
United States
(556)
Australia
(272)
United Kingdom
(255)
France
(208)
Italy
(161)
Germany
(160)
China
(159)
Japan
(156)
Spain
(153)
Canada
(122)
Netherlands
(116)
Belgium
(93)
India
(70)
South Korea
(67)
Denmark
(56)
New Zealand
(48)
Taiwan
(39)
Sweden
(39)
Poland
(38)
Austria
(36)
Iran
(35)
Switzerland
(32)
Czechia
(30)
Brazil
(30)
Norway
(26)
Israel
(25)
Hungary
(24)
Greece
(23)
Russia
(23)
Portugal
(21)
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Klebsiella variicola At-22
Klebsiella variicola At-22 genome sequencing
PRJNA37701
|
ENA
Cite
Acetobacteraceae bacterium AT-5844
Acetobacteraceae bacterium AT-5844 Genome sequencing project
PRJNA70153
|
ENA
Cite
Phlegmacium glaucopus AT 2004 276
Cortinarius glaucopus AT 2004 276 Gene Expression Profiling - Corgl_T_R1 transcriptome
PRJNA536063
|
ENA
Cite
Phlegmacium glaucopus AT 2004 276
Cortinarius glaucopus AT 2004 276 Gene Expression Profiling - Corgl_T_R3 transcriptome
PRJNA536065
|
ENA
Cite
Phlegmacium glaucopus AT 2004 276
Cortinarius glaucopus AT 2004 276 Gene Expression Profiling - Corgl_T_R2 transcriptome
PRJNA536064
|
ENA
Cite
Phlegmacium glaucopus AT 2004 276
Cortinarius glaucopus AT 2004 276 Gene Expression Profiling - Corgl_C_R1 transcriptome
PRJNA536066
|
ENA
Cite
Phlegmacium glaucopus AT 2004 276
Cortinarius glaucopus AT 2004 276 Gene Expression Profiling - Corgl_C_R2 transcriptome
PRJNA536067
|
ENA
Cite
Phlegmacium glaucopus AT 2004 276
Cortinarius glaucopus AT 2004 276 Gene Expression Profiling - Corgl_C_R3 transcriptome
PRJNA536068
|
ENA
Cite
Chaetomium sp. MPI-SDFR-AT-0129
Chaetomium sp. MPI-SDFR-AT-0129 Transcriptome - Cha_129_T
PRJNA534634
|
ENA
Cite
Ilyonectria sp. MPI-CAGE-AT-0026
Ilyonectria sp. MPI-CAGE-AT-0026 Transcriptome - Ily_026_T
PRJNA444682
|
ENA
Cite
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