Atacseq - OmicsDI

Show results for

Genomics (904)
Transcriptomics (124)
Unknown (44)
Other (9)
Proteomics (4)

Organisms

Mus musculus (175)
Homo sapiens (172)
Drosophila melanogaster (7)
Danio rerio (4)
Arabidopsis thaliana (4)
Alphavirus (3)
Anemia (3)
Archaea (3)
Bacteria (3)
Betaherpesvirinae (3)
Borrelia (3)
Chlamydomonas reinhardtii (3)
Salmo salar (2)
Gallus gallus (2)
Macaca mulatta (2)
Macaca nemestrina (2)
Parhyale hawaiensis (2)
Mus musculus musculus (1)
Oryctolagus cuniculus (1)
Aphyosemion australe (1)
Austrofundulus limnaeus (1)
Carollia perspicillata (1)
Chlorocebus pygerythrus (1)
Chlorocebus sabaeus (1)
Iconisemion striatum (1)
Magallana gigas (1)
Mus (1)
Nothobranchius furzeri (1)
Saccharomyces cerevisiae (1)
Trypanosoma brucei brucei (1)

Organisms

Mus musculus (287)
Homo sapiens (215)
Drosophila melanogaster (10)
Gallus gallus (5)
Leucoraja erinaceus (4)
Danio rerio (4)
Arabidopsis thaliana (4)
Chlorocebus sabaeus (3)
Brassica napus var. napus (3)
Parhyale hawaiensis (2)
Oryza sativa (2)
Plasmodium falciparum (2)
Rattus norvegicus (2)
Saccharomyces cerevisiae (2)
Chlorocebus pygerythrus (1)
Trypanosoma brucei brucei (1)
Carollia perspicillata (1)
Ptychodera flava (1)
Lytechinus pictus (1)
Nematostella vectensis (1)
Elephas maximus (1)
Polypedilum vanderplanki (1)
Scophthalmus maximus (1)
Mus (1)
Candidozyma auris (1)
Solanum lycopersicum (1)

Repository

ENA (660)
geo (312)
biostudies-arrayexpress (42)
EGA (20)
NODE (3)
pride (3)
MassIVE (1)

Tissue

Liver (1)
SI (1)
SI LPL (1)
Macrophage (1)
Myotube (1)
Primary cell (1)
Skeletal muscle (1)

Technology Type

Mass Spectrometry (3)
Shotgun proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
HDMSE (1)
Mass spectrometry imaging (1)
PAcIFIC (1)
SRM/MRM (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (14)
NextSeq 500 (14)
Illumina HiSeq 4000 (5)
Single nuclei were captured using the 10x Genomics Chromium Controller. (2)
Thermomixer (2)
Agilent Bioanalyser (2)
Miltenyi MACS isolation (2)
Flow Cytometer (2)
Illumina NovaSeq X (2)
NA (2)
NextSeq 2000 (2)
Real-time PCR Thermal Cycler (1)
Illumina HiSeq X (1)
Illumina HiSeq 2500 (1)
Orbitrap Fusion Lumos (1)

Publication Date

2023 (60)
2025 (48)
2026 (44)
2024 (42)
2021 (42)
2020 (42)
2022 (33)
2019 (23)
2017 (10)
2016 (6)
2018 (5)
2015 (3)

First Public Date

2025 (101)
2023 (93)
2024 (90)
2020 (87)
2021 (81)
2022 (69)
2026 (66)
2019 (37)
2017 (19)
2018 (10)
2016 (5)
2015 (2)

Classification

protozoa (3)
fungi (1)

Study type

ATAC-seq (18)
ChIP-seq (4)
RNA-seq of coding RNA from single cells (4)
RNA-seq of coding RNA (4)
ScATAC-seq (3)
Animal - High-throughput sequencing (2)
DNA-seq (2)
Single-nucleus ATAC-seq (1)
Cell line - High-throughput sequencing (1)
Other (1)
Single nucleus RNA sequencing (1)
CUT&RUN (1)

Release Date

2023 (18)
2024 (15)
2022 (14)
2021 (11)
2025 (7)
2026 (6)
2020 (6)
2016 (3)
2019 (2)
2015 (2)
2018 (1)
2017 (1)

Lab affiliation

Department of Gastroenterology, Hepatology & Nutrition, Cleveland Clinic (1)
Feinberg School of Medicine Northwestern University 303 ESuperior Street – SQ 8-522 Chicago, IL 60611 (1)
Immunoregulation Group, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany (1)

Previous page
1 / 109
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 109
Next page

Sort by:

Relevance

Page size

ATACseq in BMEL cells invalidated or not for the expression of the three HP1 isoforms (CBX1, CBX3, CBX5)

Chromatin accessibility assay by ATACseq in BMEL cells. Three clones (TKO1, TKO2, TKO3) of BMEL TKO cells invalidated for the expression of the three HP1 isoforms (Cbx1-/-; Cbx3-/-; Cbx5-/-) were compared to three clones (Het1, Het32, Het35) of BMEL Het cells (Cbx1+/+; Cbx3+/+; Cbx5+/-) as controls.

ORGANISM(S): Mus musculus

2026-03-31 | E-MTAB-15197 | biostudies-arrayexpress

ATACseq of IMR32 cells treated with ISX or solvent control

IMR32 cells were treated with DMSO/ISX and open chromatin regions were assessed via ATACseq

ORGANISM(S): Homo sapiens

2023-01-17 | E-MTAB-11633 | biostudies-arrayexpress

ATACseq

ATACseq data for this study.

EGAS00001007166 | EGA

How C/EBPa creates an elite cell state for reprogramming to pluripotency [ATACseq]

Mouse Bcell, upon ectopic expression of the transcription factor Cebpa for 18h, can be reprogrammed to iPS with extremely high efficiency. To understand the molecular control of this phenomena we performed multiple high throughtput functionnal genomic analysis. Chromatin accessibility by ATACseq in ...

ORGANISM(S): Mus musculus

2016-02-19 | E-GEOD-71214 | biostudies-arrayexpress

ATACseq of differentiating ATDC5 mouse prechondrocytes

PRJNA822947 | ENA

ATACseq of FHSD iPSC control vs doxorubicin

PRJNA627711 | ENA

bulk ATACseq of Ccd18-Co cell line treated with cytokines

PRJNA1322438 | ENA

ATACseq of IMR32 cells treated with ISX or solvent control

PRJEB52309 | ENA

ATACseq measurements during cord blood-derived human erythropoiesis

PRJNA565446 | ENA