Atra - OmicsDI

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Organisms

Homo sapiens (217)
Mus musculus (77)
Danio rerio (7)
Fulica atra (5)
Acanthopsyche atra (5)
Thecophora atra (5)
Naja atra (4)
Pachygaster atra (4)
Rattus norvegicus (4)
Tegula atra (3)
Paraplatypeza atra (2)
Phylloscelis atra (1)
Ascosphaera atra (1)
Stomotoca atra (1)
Chalcopsitta atra (1)
Zapornia atra (1)
381439 (1)
Candidatus Tisiphia endosymbiont of Thecophora atra (1)
Spiroplasma endosymbiont of Thecophora atra (1)
Ptyas mucosa (1)
Erigone atra (1)
Holothuria atra (1)
Streptomyces filamentosus (1)
Sus scrofa domesticus (1)
unidentified (1)
invertebrate gut metagenome (1)
Capra hircus (1)
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mollusc metagenome (1)

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Mass Spectrometry (27)
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HDMSE (2)
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Illumina bead array Reader confocal scanner (1)
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2020 (14)
2016 (9)
2008 (9)
2007 (4)
2005 (3)
2006 (2)
2004 (2)
2003 (1)

UNIPROT ID/AC

P10276 (1)

CHEBI ID

CHEBI:42492 (1)
CHEBI:15367 (1)
CHEBI:16670 (1)
CHEBI:18139 (1)
CHEBI:10642 (1)
CHEBI:68561 (1)
CHEBI:111517 (1)
CHEBI:50129 (1)
CHEBI:60645 (1)
CHEBI:62064 (1)
CHEBI:17822 (1)
CHEBI:49033 (1)
CHEBI:17126 (1)
CHEBI:30751 (1)
CHEBI:17234 (1)
CHEBI:15347 (1)
CHEBI:37084 (1)
CHEBI:35621 (1)
CHEBI:16530 (1)
CHEBI:16870 (1)
CHEBI:30794 (1)
CHEBI:15781 (1)
CHEBI:17754 (1)
CHEBI:16000 (1)
CHEBI:29073 (1)
CHEBI:1148 (1)
CHEBI:18211 (1)
CHEBI:422 (1)
CHEBI:16857 (1)
CHEBI:16135 (1)

Metabolite Name

Dipropylated lucibufagin isomer 3 (1)
Dipropylated lucibufagin isomer 2 (1)
Dipropylated lucibufagin isomer 1 (1)
Monoacetylated, mono propylated lucibufagin isomer 3 (1)
Monoacetylated, mono propylated lucibufagin isomer 2 (1)
Monoacetylated, mono propylated lucibufagin isomer 1 (1)
Diacetylated lucibufagin isomer 2 (1)
Diacetylated lucibufagin isomer 1 (1)
Monoacetylated lucibufagin isomer 6 (1)
Monoacetylated lucibufagin isomer 5 (1)
Monoacetylated lucibufagin isomer 4 (1)
Monoacetylated lucibufagin isomer 3 (1)
Monoacetylated lucibufagin isomer 2 (1)
Core lucibufagin isomer 3 (1)
Monoacetylated lucibufagin isomer 1 (1)
Core lucibufagin isomer 2 (1)
Core lucibufagin isomer 1 (1)
Trimethylamine (1)
Scyllo-inositol (1)
Pyruvic acid (1)
5-oxo-L-proline (1)
N-phosphocreatine (1)
L-ornithine (1)
N-acetyltyrosine (1)
N-acetyl-L-aspartic acid (1)
Methionine S-oxide (1)
(S)-lactic acid (1)
L-leucine (1)
L-isoleucine (1)
Isobutyric acid (1)

First Public Date

2025 (62)
2024 (53)
2014 (53)
2023 (51)
2026 (30)
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2021 (28)
2019 (23)
2018 (23)
2017 (20)
2020 (17)
2015 (11)
2013 (11)
2016 (4)

Modelling Approach

Ordinary differential equation model (1)

Study status

Not yet recruiting (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (2)
School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China (2)
University of Bergen (2)
Beth Israel Deaconess Medical Center, Harvard Medical School, Broad Institute (1)
Cantonal Hospital St. Gallen, Switzerland (1)
Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria. Joint Metabolome Facility, University of Vienna and Medical University of Vienna, Vienna, Austria. (1)
Department of Cell Biology, Harvard Medical School, USA (1)
Department of Laboratory Medicine, University of California, San Francisco, USA (1)
Department of Proteomic Research and Mass Spectrometry, Laboratory of Systems Biology, IBMC, Moscow, Russia (1)
Guangxi Medical University (1)
Institute for Heart Research,Centre of Experimental Medicine Slovak Academy of Sciences (1)
Laboratory for Experimental Hematology, St. Gallen Cantonal Hospital; St. Gallen, 9007, Switzerland (1)
Laboratory of Mass Spectometry (1)
Laboratory of Systems Biology,Institute of Biomedical Chemistry, Moscow, Russia (1)
Laboratory of mass spectrometry, IRCCS-Istituto di Ricerche Farmacologiche Mario Negri (1)
Laboratory of systems biology, IBMC, Moscow, Russia (1)
Laboratory of systems biology,Institute of biomedical chemistry (IBMC), Moscow, Russia (1)
Molecular Physiology, Leiden Institute for Chemistry, Leiden University, The Netherlands (1)
Proteomics and Cancer Cell Signaling Unit, German Cancer Research center(DKFZ), Heidelberg, Germany (1)
Turku Bioscience, University of Turku and Åbo Akademi University (1)
Université de Strasbourg, CNRS, Génétique Moléculaire, Génomique, Microbiologie (GMGM), UMR7156, 67000 Strasbourg, France (1)
Zhejiang University School of Medicine (1)
a) Centre de Recherche des Cordeliers (CRC), Université de Paris, Sorbonne Université, INSERM, Institut Universitaire de France, Paris, France. b) Metabolomics and Cell Biology Platforms, Institut Gustave Roussy, Villejuif, France. (1)

Keyword

Tretinoin (1)
Atezolizumab (1)
Bevacizumab (1)

IsPrivate

False (1)

Study type

Transcription profiling by array (92)
RNA-seq of coding RNA (16)
ChIP-seq (10)
Methylation profiling by array (4)
RNA-seq of coding RNA from single cells (3)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
Animal - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
Hi-C (1)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)
Interventional (1)

Release Date

2022 (118)
2021 (104)
2023 (88)
2020 (85)
2025 (79)
2019 (65)
2018 (62)
2024 (61)
2016 (59)
2014 (56)
2017 (53)
2015 (47)
2013 (37)
2012 (36)
2011 (36)
2010 (25)
2009 (17)
2008 (13)
2026 (10)
2007 (8)
2006 (5)
2003 (3)
2005 (2)
2004 (2)
2002 (2)
1998 (2)
2000 (1)
1997 (1)

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Fulica atra

PRJNA815160 | ENA

Tijuca atra strain:NA

Tijuca atra

PRJNA969383 | ENA

Naja atra

Naja atra Genome sequencing

PRJNA435854 | ENA

Chalcopsitta atra

Chalcopsitta atra Genome sequencing and assembly

PRJNA703565 | ENA

Compositional and toxicological investigation of pooled venom from farm-raised Naja atra of Hunan China

In the current project, we evaluated the composition and toxicological profile of venom collected from farm-raised Naja atra. Venom was collected from third-generation captive bred Naja atra on a snake farm in Hunan Province, China. The venom was analyzed using sodium dodecyl sulfate polyacrylamide ...

ORGANISM(S): Naja Atra

2021-07-07 | PXD027140 |

Naja atra

Naja atra Genome sequencing and assembly

PRJNA944732 | ENA

Tegula atra

Tegula atra Transcriptome or Gene expression

PRJNA348830 | ENA

PRAME induced inhibition of retinoic acid receptor signaling-mediated differentiation - a possible target for ATRA response in AML without t(15;17)

Purpose: In acute myeloid leukemia (AML) without retinoic acid receptor (RAR) rearrangement the effect of all-trans retinoic acid (ATRA) is still poorly understood despite an association of NPM1 mutation and ATRA response. Recently, PRAME (preferentially expressed antigen in melanoma) has been shown...

ORGANISM(S): Homo sapiens

2013-03-10 | E-GEOD-43258 | biostudies-arrayexpress

Holothuria atra isolate:Hatra_Nanhai

Holothuria atra isolate:Hatra_Nanhai Genome sequencing

PRJNA1430136 | ENA

Fulica atra isolate:Lodz_15173

Fulica atra isolate:Lodz_15173 Genome sequencing and assembly

PRJNA633903 | ENA

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