B56 - OmicsDI

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Unknown (92)
Proteomics (43)
Transcriptomics (38)
Genomics (5)
Metabolomics (2)
Models (1)

Organisms

Homo sapiens (20)
Mus musculus (15)
Alphavirus (14)
Anemia (14)
Archaea (14)
Bacteria (14)
Betaherpesvirinae (14)
Borrelia (14)
Botrytis cinerea (14)
Chlorella vulgaris (14)
Clostridium perfringens (14)
Enterovirus A71 (14)
Eukaryota (14)
Hepatitis B virus (14)
Human alphaherpesvirus 1 (14)
Human betaherpesvirus 5 (14)
Influenza A virus (14)
Influenza C virus (14)
Japanese encephalitis virus group (14)
Listeria monocytogenes (14)
Mammarenavirus (14)
Miscanthus x giganteus (14)
Mycobacterium tuberculosis (14)
Orthoflavivirus (14)
Panicum virgatum (14)
Saccharomyces cerevisiae (7)
Saccharomyces cerevisiae W303 (1)
Schizosaccharomyces pombe (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)

Organisms

Solanum tuberosum (1)
Mus musculus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (38)
MassIVE (21)
pride (14)
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ENA (3)
geo (2)
iProX (2)
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PAXDB (2)
Cell Collective (1)

Tissue

Cell culture (5)
Malignant cell (3)
Embryo (1)
Epithelial cell (1)
Heart (1)
Kidney (1)
Ovary (1)
Permanent cell line cell (1)
T cell (1)

Disease

Colon cancer (3)
Chronic lymphocytic leukemia (1)
Cardiovascular system disease (1)
Human immunodeficiency virus infectious disease (1)

Technology Type

Mass Spectrometry (14)
Bottom-up proteomics (6)
Shotgun proteomics (5)
Data-dependent acquisition (4)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (2)
All-ion fragmentation (1)
Gel-based experiment (1)

Instrument Platform

Q Exactive Plus (13)
Orbitrap Fusion (8)
Orbitrap Fusion Lumos (8)
LTQ Orbitrap Velos (2)
Q Exactive (2)
Applied Biosystems 1700 Chemiluminescent Microarray Analyzer (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
Enriched phosphopeptides were loaded onto a 50 cm EN C18 PepMap column with elution over a 1 h acquisition driven by a Waters mClass nanoUPLC. Eluted peptides were measured using a Thermo Orbitrap Fusion Tribrid mass spectrometer, with MS spectra acquired in the Orbitrap and MS2 spectra acquired in parallel, following HCD fragmentation, in the linear ion trap. (1)
LTQ (1)
LTQ Orbitrap Elite (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2012 (10)
2016 (8)
2024 (7)
2025 (7)
2014 (6)
2021 (6)
2013 (5)
2023 (5)
2020 (4)
2019 (4)
2015 (3)
2010 (3)
2022 (3)
2009 (2)
2018 (2)
2017 (2)
2026 (1)
2008 (1)
2007 (1)
2006 (1)
2004 (1)
2005 (1)

UNIPROT ID/AC

1FEH1_WHEAT (2)
4565.Traes_1AL_3CF82DD08.2 (2)
4565.Traes_1AL_3FDB6FDB4.1 (2)
4565.Traes_1AL_44FB362A9.2 (2)
4565.Traes_1AL_4E621A250.2 (2)
4565.Traes_1AL_51D597B92.1 (2)
4565.Traes_1AL_52E56C8D3.1 (2)
4565.Traes_1AL_53F3380AF.1 (2)
4565.Traes_1AL_5E2C30B46.1 (2)
4565.Traes_1AL_6B64D0E80.1 (2)
4565.Traes_1AL_72202D9DF.1 (2)
4565.Traes_1AL_738358449.1 (2)
4565.Traes_1AL_78CB13657.2 (2)
4565.Traes_1AL_7B509569F.1 (2)
4565.Traes_1AL_7CF571E9F.1 (2)
4565.Traes_1AL_7D6DC73FC.2 (2)
4565.Traes_1AL_9C2D7A0A6.1 (2)
4565.Traes_1AL_9EFC68149.1 (2)
4565.Traes_1AL_A47D32D30.1 (2)
4565.Traes_1AL_A69755144.1 (2)
4565.Traes_1AL_B15921488.1 (2)
4565.Traes_1AL_BAAF4391C.1 (2)
4565.Traes_1AL_BAB3D977B.1 (2)
4565.Traes_1AL_D06A380E9.2 (2)
4565.Traes_1AL_D39C4F23A.2 (2)
4565.Traes_1AL_D789B5634.1 (2)
4565.Traes_1AL_D8B97BD8D.1 (2)
4565.Traes_1AL_D8FE82B94.1 (2)
4565.Traes_1AL_E07235CF1.1 (2)
4565.Traes_1AL_EEB8BBB6B.1 (2)

CHEBI ID

CHEBI:9658 (2)
CHEBI:9629 (2)
CHEBI:42504 (2)
CHEBI:64575 (2)
CHEBI:64549 (2)
CHEBI:64566 (2)
CHEBI:16113 (2)
CHEBI:16708 (2)
CHEBI:17562 (2)
CHEBI:28842 (2)
CHEBI:17929 (2)
CHEBI:16335 (2)
CHEBI:5298 (2)
CHEBI:16347 (2)
CHEBI:57589 (2)
CHEBI:27897 (2)
CHEBI:15354 (2)
CHEBI:17295 (2)
CHEBI:17596 (2)
CHEBI:28177 (2)
CHEBI:15756 (2)
CHEBI:31169 (2)
CHEBI:17368 (2)
CHEBI:80247 (1)
CHEBI:28827 (1)
CHEBI:93843 (1)
CHEBI:132630 (1)
CHEBI:181364 (1)
CHEBI:182048 (1)
CHEBI:16776 (1)

Metabolite Name

Stearic acid (2)
Cytidine (2)
N1-[2-(2-pyridyl)ethyl]-2-aminobenzamide (1)
8(9)-EET Ethanolamide (1)
1-hydroxy-1-(4-methoxyphenyl)propan-2-yl 4-methoxybenzoate (1)
¦Á-Hydroxymidazolam (1)
Ethyl 5-hydroxy-4-oxo-4H-chromene-2-carboxylate (1)
-Aspartylphenylalanine (1)
2,3-Dihydroxybiphenyl (1)
Raspberry ketone (1)
Bonactin (1)
3-HYDROXYBUTANOIC ACID (1)
Delta-Tocopherol (1)
Acetyl phosphate (1)
Hydroxymethylglutaric acid (1)
Sparteine (1)
3-amino-2,6-diphenyl-4,7-dihydro-2H-pyrazolo[3,4-d]pyrimidin-4-one (1)
Uracil 1-beta-D-arabinofuranoside (1)
5-hydroxy-2-phenyl-4H-chromen-4-one (1)
7-methylpyrimido[4,5-d]pyrimidin-4-amine (1)
2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-6-methyl-4H-chromen-4-one (1)
Cis-Resveratrol (1)
3-methoxy-2-phenyl-4H-furo[2,3-h]chromen-4-one (1)
IMH (1)
N1-[2-oxo-6-(1H-pyrrol-1-yl)-2H-chromen-3-yl]acetamide (1)
4-methoxy-9-(2-methylbut-3-en-2-yl)-7H-furo[3,2-g]chromen-7-one (1)
3-ethyl-4-hydroxy-1-methyl-1,2-dihydroquinolin-2-one (1)
6,6-dimethyl-4-piperidino-5,6-dihydro-2H-thiine-2-thione (1)
6-methyl-4-(morpholinomethyl)-2H-chromen-2-one (1)
6-methyl-7-nitro-2,3-dihydro-1,4-benzodioxine (1)

First Public Date

2025 (1)
2019 (1)
2014 (1)

Study type

Transcription profiling by array (24)
RNA-seq of coding RNA (8)
ChIP-seq (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (15)
2016 (11)
2015 (10)
2012 (10)
2025 (9)
2013 (8)
2022 (8)
2014 (7)
2020 (6)
2019 (6)
2024 (5)
2023 (5)
2017 (5)
2010 (4)
2007 (3)
2018 (3)
2011 (3)
2026 (2)
2009 (2)
2006 (2)
2008 (1)
2004 (1)
2005 (1)
2002 (1)
2000 (1)

Lab affiliation

Department of Biochemistry and Cell Biology, Geisel School of Medicine at Dartmouth (3)
Cambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK. (1)
Cellular and Systems Medicine, Jacqui Wood Cancer Centre, School of Medicine, University of Dundee, Dundee. DD1 9SY, UK (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (1)
Department of Microbiology; Icahn School of Medicine at Mount Sinai; New York, NY, 10029; USA (1)
Mass Spectrometry Facility, Max Perutz Labs, University of Vienna, Vienna BioCenter, Dr. Bohr-Gasse 9, 1030 Vienna, Austria (1)
Memorial Sloan-Kettering Cancer Center, New York, NY UNITED STATES (1)
Philipps-Universität Marburg Faculty of Chemistry Hans-Meerwein-Str. 4 35043 Marburg GERMANY (1)
Principal Investigator MRC Career Development Fellow School of Life Sciences, University of Dundee Email: f.pelisch@dundee.ac.uk Website: pelischlab.co.uk Twitter: @fpelisch Skype: federico.pelisch (1)
The Francis Crick Institute, Cell Cycle Laboratory (1)
Turku Bioscience Centre, University of Turku and Åbo Akademi University, 20520 Turku, Finland Institute of Biomedicine, University of Turku, 20520 Turku, Finland (1)
Wellcome Centre for Cell Biology, University of Edinburgh (1)

Tags

xref:PubMed:16038780 (1)
xref:PubMed:30267595 (1)

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A chemical-genetic system to rapidly inhibit the PP2A-B56 phosphatase

Serine-threonine phosphatases have been challenging to study because of the lack of specific inhibitors. Their catalytic domains are druggable, but these are shared or very similar between individual phosphatase complexes, precluding their specific inhibition. Instead, phosphatase complexes achieve ...

ORGANISM(S): Homo sapiens (Human)

2025-02-06 | PXD056390 | Pride

A Nonsynonymous/Synonymous Substitution Analysis of the B56 Gene Family Aids in Understanding B56 Isoform Diversity.

Not available

S-EPMC4687035 | biostudies-literature

Solanum tuberosum

Solanum tuberosum B56 Germplasm Raw RNA-sequencing

PRJNA1206953 | ENA

Self-priming of Plk1 binding to BubR1 ensures accurate mitotic progression

Plk1 is a key mitotic kinase that localizes to distinct subcellular structures to promote accurate mitotic progression. Plk1 recruitment depends on direct interaction between polo-box domain (PBD) on Plk1 and PBD binding motif (PBD BM) on the interactors. However, recent study showed that PBD BM alo...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2024-10-31 | MSV000096264 | MassIVE

A dynamic charge-charge interaction modulates PP2A:B56 substrate recruitment.

Not available

S-EPMC7108865 | biostudies-literature

Evolutionary Analysis of the B56 Gene Family of PP2A Regulatory Subunits.

Not available

S-EPMC4463637 | biostudies-literature

Division of labour between PP2A-B56 isoforms at the centromere and kinetochore.

Not available

S-EPMC6398977 | biostudies-literature

SCF-Fbxo42 promotes synaptonemal complex assembly by downregulating PP2A-B56

Meiosis creates genetic diversity by recombination and segregation of chromosomes. The synaptonemal complex assembles during meiotic prophase I and assists faithful exchanges between homologous chromosomes, but how its assembly/disassembly is regulated remains to be understood. Here we report how ...

ORGANISM(S): Drosophila melanogaster (Fruit fly)

2020-12-07 | PXD022755 | Pride

Drosophila

Determinants of site-specific dephosphorylation by PP2A-B56

The tumor suppressor PP2A is a major cellular protein phosphatase that regulates numerous cellular processes through the formation of holoenzymes containing distinct regulatory B-subunits. However, the determinants of differential substrate dephosphorylation by PP2A are poorly understood. Here, we d...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2019-08-28 | MSV000084245 | MassIVE

Expanding the PP2A Interactome by Defining a B56-Specific SLiM.

Not available

S-EPMC5180209 | biostudies-literature

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181 Results

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