Ba Yang Y - OmicsDI

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Unknown (1162)
Transcriptomics (69)
Proteomics (21)
Genomics (10)
Metabolomics (9)

Organisms

Homo sapiens (35)
Mus musculus (13)
Arabidopsis thaliana (6)
Leishmania infantum (4)
Leishmania donovani (3)
Dictyostelium discoideum (3)
Bos taurus (3)
Saccharomyces cerevisiae (3)
Leishmania major (2)
Staphylococcus aureus (2)
Rattus norvegicus (2)
Severe acute respiratory syndrome coronavirus 2 (1)
Nannospalax galili (1)
delta proteobacterium NaphS2 (1)
Folsomia candida (1)
Arachis hypogaea (1)
Bacillus thuringiensis Bt407 (1)
Zea mays (1)
Rattus rattus (1)
Geobacter sulfurreducens (1)
Bacteroides fragilis (1)
Bos grunniens (1)
Citrobacter freundii complex (1)
Clostridium butyricum (1)
Enterobacter asburiae (1)
Enterococcus casseliflavus (1)
Enterococcus faecalis (1)
Escherichia coli ATCC 25922 (1)
Klebsiella aerogenes (1)
Klebsiella pneumoniae (1)

Repository

biostudies-arrayexpress (74)
pride (10)
MetaboLights (9)
EGA (6)
iProX (5)
MassIVE (4)
jPOST (1)

Tissue

Blood plasma (2)
Cell culture (2)
Permanent cell line cell (1)
Skin (1)

Disease

Porphyria NOS (1)
Head and neck squamous cell carcinoma (1)
Lung cancer (1)

Technology Type

Mass Spectrometry (10)
Mass spectrometry (8)
Shotgun proteomics (5)
Bottom-up proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Affinity proteomics (1)
MSE (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (5)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 4000 (2)
Bioinformatics Core Facility, Centre for Molecular Medicine, CEITEC Masaryk University (1)
Cell culture laboratory, BSL-3 lab (1)
Library preparation kit (1)
RNA isolation laboratory (1)
BSL-3 laboratory (1)
Desktop (1)
GenePix4000B (1)
GenePix Professional 4200A [Axon Instruments] (1)
NextSeq 1000 (1)
NextSeq 550 (1)
Orbitrap Fusion ETD (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive mass spectrometer (Thermo Scientific) (1)
TimsTOF Pro 2 (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - (1)
Bruker (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2010 (15)
2013 (13)
2012 (10)
2005 (9)
2008 (7)
2022 (6)
2021 (6)
2026 (5)
2025 (4)
2015 (4)
2023 (4)
2024 (4)
2014 (3)
2009 (3)
2006 (2)
2019 (2)
2011 (1)
2007 (1)
2020 (1)
2018 (1)

CHEBI ID

CHEBI:15741 (3)
CHEBI:195307 (2)
CHEBI:195306 (2)
CHEBI:195305 (2)
CHEBI:195304 (2)
CHEBI:195303 (2)
CHEBI:1926 (2)
CHEBI:72736 (2)
CHEBI:28997 (2)
CHEBI:77131 (2)
CHEBI:33404 (2)
CHEBI:90 (2)
CHEBI:15676 (2)
CHEBI:17066 (2)
CHEBI:17748 (2)
CHEBI:15846 (2)
CHEBI:16000 (2)
CHEBI:80774 (2)
CHEBI:422 (2)
CHEBI:17750 (2)
CHEBI:25094 (2)
CHEBI:16865 (2)
CHEBI:17568 (2)
CHEBI:32816 (2)
CHEBI:17203 (2)
CHEBI:16977 (2)
CHEBI:16750 (2)
CHEBI:15428 (2)
CHEBI:18012 (2)
CHEBI:30915 (2)

Metabolite Name

3,5-dihydroxy-6-carbomethoxy-2-(3-methyl-2-butenyl)bibenzyl (2)
Radulannin H (2)
Radulannin A (2)
Radulannin L (2)
4-prenyldihydropinosylvin (2)
Sinapic acid (2)
AMP (2)
Guanosine (2)
(3beta,4alpha,5alpha,23E)-4-Methylergosta-7,23-dien-3-ol (1)
3-Mercaptohexyl pentanoate (1)
()-2-(2-Furanyl)pyrrolidine (1)
Glycohyodeoxycholic acid (1)
Beta-D-Glucosyl-2-hydroxycinnamate (1)
Rhamnegin (1)
Quercetin-3-neohesperidoside-7-rhamnoside (1)
Kaempferol 3-O-beta-D-rhamninoside (1)
Isorhamnetin-3-O-rutinoside (1)
3-ketocholic acid (1)
Bibenzyl CBG (1)
Taurodeoxycholic acid (1)
Ursodeoxycholic acid (1)
(3beta,4beta,5alpha)-4-Methylergosta-7,24(28)-dien-3-ol (1)
Aldehydo-N-acetyl-D-glucosamine (1)
(R)-3-hydroxybutyrate (1)
(R)-3-hydroxybutyric acid (1)
Olivin (1)
Tauroursodeoxycholic acid (1)
Cis-2-Hydroxycinnamate (1)
2-Amino-3,8-dimethyl-3H-imidazo[4,5-f]quinoxaline (1)
2-Methyl-3-(2-propenyl)pyrazine (1)

Study type

Transcription profiling by array (42)
Comparative genomic hybridization by array (8)
RNA-seq of coding RNA (6)
ChIP-chip by tiling array (4)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
Antigen profiling (1)
Transcription profiling by RT-PCR (1)
ChIP-seq (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2023 (175)
2022 (160)
2025 (142)
2024 (132)
2021 (126)
2020 (74)
2019 (61)
2015 (59)
2017 (42)
2016 (41)
2013 (39)
2018 (37)
2014 (35)
2012 (24)
2026 (22)
2010 (22)
2011 (10)
2008 (10)
2005 (9)
2009 (6)
2007 (5)
2006 (4)
2004 (1)

Lab affiliation

1Department of Chemistry, Georgia State University, Atlanta, GA (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Biology University of Rochester Rochester, NY , USA (1)
Department of Clinical Laboratory The Second Affiliated Hospital Guizhou University of Traditional Chinese Medicine (1)
Department of Structural Biology, St. Jude Children’s Research Hospital, Memphis, TN 38105, USA Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Functional Proteomics, ICR (1)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 United States of America (1)
School of Medicine, Shanghai University, Shanghai 200444, China. (1)
Stanford University School of Medicine 279 Campus Drive Stanford, CA 94305-5323 (1)

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Hyocholic acid species as novel biomarkers for metabolic disorders

Hyocholic acid (HCA) is a major bile acid (BA) species in the BA pool of pigs, a species known for its exceptional resistance to spontaneous development of diabetic phenotypes. HCA and its derivatives are also present in human blood and urine. We investigate whether human HCA profiles can predict th...

2021-10-06 | MTBLS2343 | MetaboLights

Non-invasive urinary metabolomic profiles discriminate biliary atresia from infantile hepatitis syndrome

INTRODUCTION: Neonatal cholestatic disorders are a group of hepatobiliary diseases occurring in the first 3 months of life. The most common causes of neonatal cholestasis are infantile hepatitis syndrome (IHS) and biliary atresia (BA). The clinical manifestations of the two diseases are ...

2019-06-25 | MTBLS689 | MetaboLights

Antibody evasion of SARS-CoV-2 Omicron BA.1, BA.1.1, BA.2, and BA.3 sub-lineages.

Not available

S-EPMC9080084 | biostudies-literature

BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection.

Not available

S-EPMC9385493 | biostudies-literature

Tracking the first SARS-CoV-2 Omicron BA.5.1.3 outbreak in China.

Not available

S-EPMC10232789 | biostudies-literature

Broadly neutralizing and protective nanobodies against SARS-CoV-2 Omicron subvariants BA.1, BA.2, and BA.4/5 and diverse sarbecoviruses.

Not available