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ProteomicsShotgun Protein Sequencing With Meta Contig Assembly
Guthals A, Clauser KR, Bandeira N. Mol Cell Proteomics 2012, 11, 1084-1096. doi:10.1074/mcp.M111.015768. Tranche_hash:s+8iy5TbHHydsOPmTf9yqotRGvkxeJPF8BXJxMxxZOnCRXqbje8wbn+Orpxr51YR3L0S2sZBTYljUdHUF35LjfTqeukAAAAAAv6xWQ==
2013-11-21 | MSV000078501 | MassIVE
ProteomicsBioplex AP-MS Dataset for Library Construction
The BioPlex (biophysical interactions of ORFeome-based complexes) network is the result of creating thousands of cell lines with each expressing a tagged version of a protein from the ORFeome collection. Immunopurification of the tagged protein and detection of associated proteins by mass spectromet...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-25 | MSV000080679 | MassIVE
ProteomicsiPRG 2012: A Study on Detecting Modified Peptides in a Complex Mixture
This is the data and results associated with the 2012 study organized by the proteome informatics research group of the Association of Biomolecular Resource Facilities, which investigated participants' ability to identify a range of post-translationally modified peptides spiked into a yeast lysate b...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2013-11-19 | MSV000078492 | MassIVE
ProteomicsLambert_BRD_SAINT2307_JQ1_APMS_time_course_TripleTOF_P82_VS5
This submission contains the mass spectrometry files for the manuscript by Lambert, Picaud et al. that describes the characterization of interactome changes induced by JQ1 on the BET proteins. More precisely, files used in the SAINT express task 2307 are in this dataset. The AP-MS experiments involv...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-04-25 | MSV000081006 | MassIVE
MetabolomicsGNPS - MS/MS networking guided analysis of molecule and gene cluster families - Figure 4
Paper Title: MS/MS networking guided analysis of molecule and gene cluster families Author List: Don Duy Nguyen, Cheng-Hsuan Wu, Wilna J. Moree, Anne Lamsa, Marnix H. Medema, Xiling Zhao, Ronnie G. Gavilan, Marystella Aparicio, Librada Atencio, Chanaye Jackson, Javier Ballesteros, Joel Sanchez, Jer...
ORGANISM(S): Pseudoalteromonas Piscicida Jcm 20779t Pseudoalteromonas 04m1a Pseudoalteromonas Ot59 
2014-02-18 | MSV000078551 | GNPS
ProteomicsSAINT_3727_JQ1_APMS_endoK562_P82_VS17_28AUG2018
This submission contains the mass spectrometry files for the manuscript by Lambert, Picaud et al. that describes the characterization of interactome changes induced by JQ1 on the BET proteins. This submission contains 16 files associated with endogenous IP-MS analysis of BRD2, BRD3 and BRD4 (IgG was...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-08-28 | MSV000082859 | MassIVE
ProteomicsSAINT_3726_JQ1_APMS_endoHEK293_P82_VS16_28AUG2018
This submission contains the mass spectrometry files for the manuscript by Lambert, Picaud et al. that describes the characterization of interactome changes induced by JQ1 on the BET proteins. This submission contains 16 files associated with endogenous IP-MS analysis of BRD2, BRD3 and BRD4 (IgG was...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-08-28 | MSV000082857 | MassIVE
MetabolomicsGNPS - MS/MS networking guided analysis of molecule and gene cluster families - Figure 1
Paper Title: MS/MS networking guided analysis of molecule and gene cluster families Author List: Don Duy Nguyen, Cheng-Hsuan Wu, Wilna J. Moree, Anne Lamsa, Marnix H. Medema, Xiling Zhao, Ronnie G. Gavilan, Marystella Aparicio, Librada Atencio, Chanaye Jackson, Javier Ballesteros, Joel Sanchez, Jer...
ORGANISM(S): Bacillus Es382 Bacillus Es341 Bacillus Es221 Bacillus Es342 Bacillus Es386 Bacillus Es222 Bacillus Es343 Bacillus Es387 Bacillus Es223 Bacillus Gp24 Bacillus Ls18 Bacillus Es345 Bacillus Gp25 Bacillus Es20 Bacillus Zk4636 Pseudomonas Ch36 Bacillus Zk4678 Bacillus Zk4633 Pseudomonas Rw10s2 Pseudomonas Rw10s1 Bacillus Es190 Bacillus Fzb42 Pseudomonas Putdia Pseudomonas 3w11m1 Bacillus Es332 Bacillus Es333 Bacillus Es335 Bacillus Es336 Bacillus Es337 Pseudomonas Es60 Pseudomonas C52 Bacillus Subtilis 3610 Bacillus Es120 Pseudomonas Hcl17 Pseudomonas Es11 Bacillus Es44 Pseudomonas Es97 Bacillus Py79 Bacillus Ls276 Bacillus Lcts Bacillus Qbm1551 Pseudomonas Aurantiaca Pseudomonas Bw10s1 Pseudomonas Pa14 Bacillus Es392 Pseudomonas Rw951 Bacillus Es73 Bacillus Es113 Bacillus Ls29 Bacillus Es114 Bacillus Ls28 Bacillus Es115 Bacillus Es76 Bacillus Kp1032 Bacillus Es118 Pseudomonas Pa01 Bacillus Lct22 Pseudomonas Bw11p2 
2014-02-18 | MSV000078552 | GNPS
ProteomicsMSPLIT-DIA dataset
Data set for tool MSPLIT-DIA and publication titile: "Sensitive peptide identification in data-independent acquisition by spectral library search"
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) E. Coli 
2015-07-27 | MSV000079200 | MassIVE
ProteomicsddDT results from 2014 MCP alpha-lytic protease proteomics paper
ddDT runs of peptides from four separate protease digestions. CID for z=2, ETD for z>=3
ORGANISM(S): Schizosaccharomyces Pombe (ncbitaxon:4896) 
2015-01-30 | MSV000079025 | MassIVE
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