Banerjee M M - OmicsDI

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Unknown (2355)
Proteomics (59)
Transcriptomics (27)
Genomics (13)
Metabolomics (4)

Organisms

Homo sapiens (58)
Mus musculus (16)
Severe acute respiratory syndrome coronavirus 2 (3)
Mus musculus domesticus (2)
mouse gut metagenome (2)
Mycobacterium tuberculosis H37Rv (2)
Escherichia coli (2)
Rattus norvegicus (2)
gut metagenome (1)
Saccharomyces cerevisiae (1)
Candida albicans (1)
Drosophila melanogaster (1)
Danio rerio (1)
Sus scrofa domesticus (1)
Bat coronavirus RaTG13 (1)
Channa striata (1)
Coccinia grandis (1)
Eptesicus fuscus (1)
Labeo rohita (1)
Prevotella corporis DSM 18810 = JCM 8529 (1)
Rattus rattus (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)
Xiphophorus malinche x Xiphophorus birchmanni (1)

Repository

pride (51)
biostudies-arrayexpress (34)
EGA (7)
MetaboLights (4)
MassIVE (3)
PanoramaPublic (3)
iProX (1)

Tissue

Cell culture (11)
Blood plasma (5)
Brain (4)
Blood cell (3)
Epithelial cell (3)
Kidney (3)
Liver (3)
Hepatocyte (2)
Nasal lavage fluid (2)
Permanent cell line cell (2)
Primary cell (2)
Blood vessel (1)
Cell suspension culture (1)
Electrically active cell (1)
Flower bud (1)
HEK-293T cell (1)
HeLa cell (1)
Heart (1)
LNCaP cell (1)
Leukocyte (1)
Lymph node (1)
MDA-MB-231 cell (1)
Macrophage (1)
Pancreas (1)
Pluripotent stem cell (1)
Prostate gland (1)
Tongue squamous epithelium (1)
Trophoblast (1)

Disease

COVID-19 (3)
Disease free (3)
Cardiovascular system disease (2)
Amyotrophic lateral sclerosis (1)
Head and neck squamous cell carcinoma (1)
Hepatocellular carcinoma (1)
Liver disease (1)
Lung adenocarcinoma (1)
Lymphoma (1)
Prostate cancer (1)
Respiratory syncytial virus infectious disease (1)

Technology Type

Mass Spectrometry (51)
Shotgun proteomics (23)
Bottom-up proteomics (9)
Affinity purification coupled with mass spectrometry proteomics (7)
Data-dependent acquisition (6)
Mass spectrometry (4)
Gel-based experiment (3)
SWATH MS (3)
SRM/MRM (2)
Aperio (1)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Illumina MiSeq (3)
Orbitrap Fusion (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
NCounter Digital Analyzer (1)
NCounter Prep Station (1)
NanoDrop ND-100 (1)
Generic (1)
Computer (1)
Applied Biosciences (1)
Applied Biosystems (1)
Mo-Bio Powersoil extraction kit (1)
Experimental (1)
None (1)
GenePix 4000A [Axon Instruments] (1)
None (1)
Illumina HiSeq 2000 (1)
Gas Chromatography MS - positive (1)

Publication Date

2025 (11)
2022 (10)
2023 (9)
2021 (9)
2026 (8)
2020 (6)
2024 (6)
2016 (5)
2015 (5)
2013 (5)
2019 (4)
2018 (3)
2012 (3)
2011 (2)
2010 (2)
2007 (2)
2014 (1)
2008 (1)
2006 (1)
2005 (1)
2017 (1)

CHEBI ID

CHEBI:10106 (2)
CHEBI:10135 (2)
CHEBI:102216 (2)
CHEBI:111173 (2)
CHEBI:116314 (2)
CHEBI:1217 (2)
CHEBI:134485 (2)
CHEBI:134750 (2)
CHEBI:134758 (2)
CHEBI:134827 (2)
CHEBI:134834 (2)
CHEBI:134894 (2)
CHEBI:134934 (2)
CHEBI:135291 (2)
CHEBI:135566 (2)
CHEBI:135932 (2)
CHEBI:137055 (2)
CHEBI:137125 (2)
CHEBI:137268 (2)
CHEBI:1391 (2)
CHEBI:142245 (2)
CHEBI:142683 (2)
CHEBI:143054 (2)
CHEBI:143870 (2)
CHEBI:1458 (2)
CHEBI:156235 (2)
CHEBI:15746 (2)
CHEBI:15756 (2)
CHEBI:1582 (2)
CHEBI:15843 (2)

Metabolite Name

(-)-Octanoylcarnitine (2)
(-)-Rhododendrin (2)
(-)-THREO-SPHINGOSINE (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3R,4S,5S,6R)-2-[(3Z)-hex-3-en-1-yloxy]-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(3S)-3-Amino-2-azepanone (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9E,12E)-9,12-Octadecadienoic acid (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
(Z)-Hex-3-enyl benzoate (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
1-(4-methylphenyl)-3,5-diphenylpent-2-ene-1,5-dione (2)
1-Allyl-2,3,4,5-tetramethoxybenzene (2)
1-Heptanethiol (2)
1-Hexadecanoyl-sn-glycero-3-phosphocholine (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-Monopalmitoylglycerol (2)
1-Oleoyl-rac-glycerol (2)
1-Tetradecylamine (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)

Study type

Transcription profiling by array (17)
DNA-seq (5)
RNA-seq of coding RNA (3)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Comparative genomic hybridization by array (1)
Other (1)
ChIP-seq (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (290)
2022 (290)
2021 (256)
2023 (243)
2024 (227)
2020 (188)
2019 (142)
2018 (122)
2016 (102)
2015 (99)
2017 (99)
2014 (75)
2013 (57)
2026 (44)
2010 (32)
2012 (31)
2011 (30)
2009 (17)
2007 (13)
2008 (10)
2006 (7)
2005 (6)
2004 (3)
2002 (3)
2001 (1)
2000 (1)
1998 (1)

Lab affiliation

Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (3)
Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (3)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (2)
1- Vaccine and Infectious Disease Organization (VIDO), University of Saskatchewan, Saskatoon, SK, Canada (1)
Associate Professor & Co-Chair, Biology Division Indian Institute of Science Education and Research (IISER Pune) Dr. Homi Bhabha Road, Pashan, Pune-411008. Maharashtra, India. (1)
Associate Professor Regional Centre for Biotechnology (1)
Associate Professor, Centre for Biosystems Science and Engineering, IISC Bangalore, India (1)
CNRS, UMR7178, LSMBO, 67087 Strasbourg, FRANCE Université de Strasbourg, IPHC, 25 rue Becquerel, 67087 Strasbourg, FRANCE (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3 (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3. (1)
Center for Neuroscience Research, Children's National Hospital, Washington, DC. 20010 USA (1)
Centre de Recherche sur le Cancer, PROTEO et Département de Biologie Moléculaire, Biochimie Médicale et Pathologie, Université Laval, Division Oncologie, Centre de Recherche du Centre Hospitalier Universitaire (CHU) de Québec, Québec, Canada (1)
Centre for Liver Research, School of Digestive and Liver diseases, IPGME&R, Kolkata- 700020, West bengal , INDIA (1)
Chemistry Department, University of Minnesota (1)
Chief Scientist, Professor and Head, Cancer Biology Division CSIR-Central Drug Research Institute & AcSIR, LSS-006 Jankipuram Extension, Lucknow 226031, India (1)
Department of Biochemistry and Molecular Genetics, University of Anschutz Medical Campus, Aurora CO (1)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (1)
Department of Biology, Stanford University, USA (1)
Department of Internal Medicine, Section on Molecular Medicine, Wake Forest School of Medicine, Winston-Salem, NC, 27157, USA (1)
Departmentof Biochemistry & Structural Biology Lund University, Sweden (1)
Dipyaman Ganguly, IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology, Kolkata, West Bengal , India, 700091 (1)
Director, CSIR-INDIAN INSTITUTE OF CHEMICAL BIOLOGY, KOLKATA,INDIA (1)
Functional Proteomics Institute of Cancer Research (1)
Harvard Institutes of Medicine 2nd floor, Room 221 4 Blackfan Circle Boston, MA 02115 (1)
Helmholtz-Institute for Pharmaceutical Research Saarland (1)
ICAR- Central Inland Fisheries Research Institute, Fishery Resource and Environmental Management Division, Biochemistry Laboratory, Proteomics Unit, Barrackpore- 700120. Ph- +919230618153 (1)
ICAR-Central Inland Fisheries Research Institute, Fishery Resourse & Environmental Management Division, Biochemistry Lab-1, Proteomics Unit, Barrackpore, Kolkata, India (1)
ICR (1)
IMSB, ETH Zurich (1)
Institut de recherches cliniques de Montréal (IRCM), Montréal, QC, H2W 1R7, Canada Integrated Program in Neuroscience, McGill University, Montréal, QC, H3A 2B4, Canada Division of Experimental Medicine, McGill University, Montréal, QC, H3A 2B2, Canada Department of Anatomy and Cell Biology, McGill University, Montréal, QC, H3A 0C7, Canada (1)

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Gastric LTi cells promote lymphoid follicle formation but are limited by IRAK-M and do not alter microbial growth.

Not available

S-EPMC4510039 | biostudies-literature

Solution-processable porous graphitic carbon from bottom-up synthesis and low-temperature graphitization.

Not available

S-EPMC8221055 | biostudies-literature

Emptying and filling a tunnel bronze.

Not available

S-EPMC5514409 | biostudies-literature

Effect of ring rotation upon gas adsorption in SIFSIX-3-M (M = Fe, Ni) pillared square grid networks.

Not available

S-EPMC5364996 | biostudies-literature

Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection.

Not available

S-EPMC4845000 | biostudies-literature

Incorporation of Hydroxyethylcellulose-Functionalized Halloysite as a Means of Decreasing the Thermal Conductivity of Oilwell Cement.

Not available

S-EPMC6212445 | biostudies-literature

Zebrafish foxc1a is required for appendage specific neural circuit development

RNA-seq analysis of zebrafish foxc1a mutant For RNA-seq, mRNA was extracted from 38-40 hpf old embryos. We isolated wild type and foxc1a mutant samples by dissecting the entire first 6 anterior somitic segments (AS) through which the fin nerves migrate, and the adjacent posterior segments (PS; segme...

ORGANISM(S): Danio rerio

2015-03-05 | E-GEOD-64125 | biostudies-arrayexpress

Matrix transformation of lunar regolith and its use as a feedstock for additive manufacturing.

Not available

S-EPMC10074153 | biostudies-literature

Cellular Senescence as a Brake or Accelerator for Oncogenic Transformation and Role in Lymphatic Metastasis.

Not available

S-EPMC9917379 | biostudies-literature

Structural and functional insights into calmodulin-mediated lipid binding and proteolytic cleavage of the M-PMV matrix protein.

Not available

S-EPMC12858339 | biostudies-literature