Banerjee R R - OmicsDI

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Unknown (2044)
Proteomics (61)
Transcriptomics (32)
Genomics (9)
Metabolomics (4)
Models (3)

Organisms

Schizosaccharomyces pombe (36)
Human immunodeficiency virus 1 (36)
Oryza sativa Indica Group (36)
Sinorhizobium meliloti BL225C (36)
Sus scrofa domesticus (36)
Ostreococcus tauri (36)
Saccharomyces cerevisiae (36)
Staphylococcus aureus (36)
Rattus norvegicus (36)
Escherichia coli (36)
Candida albicans (36)
Cyanophora paradoxa (36)
Bursaphelenchus xylophilus (36)
Entamoeba histolytica (36)
Physcomitrium patens (36)
Methylohalobius crimeensis 10Ki (36)
Homo sapiens (36)
Homo sapiens (28)
Mus musculus (7)
Mus musculus domesticus (2)
mouse gut metagenome (2)
Drosophila melanogaster (2)
Rattus norvegicus (2)
gut metagenome (1)
Mycobacterium tuberculosis H37Rv (1)
Saccharomyces cerevisiae (1)
Candida albicans (1)
Danio rerio (1)
Pseudomonas putida KT2440 (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Repository

biostudies-arrayexpress (38)
pride (36)
MassIVE (19)
PanoramaPublic (5)
EGA (4)
MetaboLights (4)
BioModels (3)

Tissue

Cell culture (6)
Blood plasma (4)
Permanent cell line cell (3)
Nasal lavage fluid (2)
Liver (2)
Pituitary gland (1)
Tongue squamous epithelium (1)
Trophoblast (1)
MDA-MB-231 cell (1)
HEK-293T cell (1)
Electrically active cell (1)
Adipose tissue (1)
Lymph node (1)
Leukocyte (1)
Heart (1)
Brain (1)
Cell suspension culture (1)
Hepatocyte (1)
Lung (1)
Epithelial cell (1)
Kidney (1)
Blood cell (1)

Disease

COVID-19 (2)
Disease free (2)
Diabetes mellitus (1)
Hepatocellular carcinoma (1)
Lung adenocarcinoma (1)
Obesity (1)
Lymphoma (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Cardiovascular system disease (1)
Head and neck squamous cell carcinoma (1)
Respiratory syncytial virus infectious disease (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (20)
Bottom-up proteomics (6)
Data-dependent acquisition (5)
Mass spectrometry (4)
Top-down proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
SWATH MS (1)
Data-independent acquisition (1)
SRM/MRM (1)
Gel-based experiment (1)

Instrument Platform

Orbitrap Fusion (18)
Illumina MiSeq (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
NCounter Digital Analyzer (1)
NCounter Prep Station (1)
NanoDrop ND-100 (1)
Generic (1)
Computer (1)
Applied Biosciences (1)
Applied Biosystems (1)
Mo-Bio Powersoil extraction kit (1)
Experimental (1)
None (1)
GenePix 4000A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
None (1)
LTQ Orbitrap (1)
Gas Chromatography MS - positive (1)

Publication Date

2025 (22)
2022 (11)
2023 (10)
2024 (9)
2021 (9)
2026 (6)
2020 (5)
2015 (5)
2013 (5)
2016 (4)
2011 (4)
2014 (3)
2012 (3)
2019 (2)
2010 (2)
2007 (2)
2009 (1)
2008 (1)
2006 (1)

CHEBI ID

CHEBI:89746 (2)
CHEBI:84100 (2)
CHEBI:8832 (2)
CHEBI:173890 (2)
CHEBI:177599 (2)
CHEBI:182449 (2)
CHEBI:182253 (2)
CHEBI:182699 (2)
CHEBI:177514 (2)
CHEBI:177688 (2)
CHEBI:182667 (2)
CHEBI:1458 (2)
CHEBI:183730 (2)
CHEBI:41674 (2)
CHEBI:165502 (2)
CHEBI:177394 (2)
CHEBI:29735 (2)
CHEBI:168507 (2)
CHEBI:75457 (2)
CHEBI:64304 (2)
CHEBI:69081 (2)
CHEBI:17252 (2)
CHEBI:88595 (2)
CHEBI:165595 (2)
CHEBI:167578 (2)
CHEBI:89871 (2)
CHEBI:172380 (2)
CHEBI:165178 (2)
CHEBI:177477 (2)
CHEBI:174791 (2)

Metabolite Name

3-hydroxyoctanoylcarnitine (2)
(-)-Rhododendrin (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
[(4Z)-5-(Methylsulfanyl)-4-penten-2-yn-1-yl]benzene (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
2-linoleoylglycerol (2)
1-Monopalmitoylglycerol (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-oleoyl-sn-glycero-3-phosphoethanolamine (2)
1-Tetradecylamine (2)
2-((2E)-3,7-Dimethyl-2,6-octadienyl)-5,6-dimethoxy-3-methyl-1,4-benzenediol (2)
2-(12-Tridecyn-1-yl)furan (2)
2,2,6,6-Tetramethyl-1-piperidinol (2)
2,3,4,9-Tetrahydro-1H-beta-carboline-1,3-dicarboxylic acid (2)
2,6-di-tert-butyl-4-ethylphenol (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)
Isobutyl benzoate (2)
3-Cyclooctyl-1,1-dimethylurea (2)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Modelling Approach

Ordinary differential equation model (3)

Study type

Transcription profiling by array (24)
DNA-seq (5)
RNA-seq of coding RNA (2)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Other (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (235)
2025 (226)
2023 (219)
2021 (212)
2024 (209)
2020 (157)
2019 (117)
2018 (115)
2017 (95)
2015 (94)
2016 (88)
2014 (70)
2013 (53)
2012 (37)
2011 (32)
2010 (27)
2026 (27)
2009 (20)
2008 (15)
2007 (13)
2006 (8)
2005 (3)
2002 (3)
2004 (2)
2003 (2)
2001 (1)
2000 (1)
1998 (1)

Lab affiliation

Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (3)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (2)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3. (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3 (1)
CNRS, UMR7178, LSMBO, 67087 Strasbourg, FRANCE Université de Strasbourg, IPHC, 25 rue Becquerel, 67087 Strasbourg, FRANCE (1)
Department of Internal Medicine, Section on Molecular Medicine, Wake Forest School of Medicine, Winston-Salem, NC, 27157, USA (1)
Prof. Sanjeeva Srivastava, PhD, FRSB, FRSC Professor and Group Head Department of Biosciences & Bioengineering Indian Institute of Technology Bombay Mumbai – 400076, India Phone: +91-22-2576-7779 Email: sanjeeva@iitb.ac.in (1)
Harvard Institutes of Medicine 2nd floor, Room 221 4 Blackfan Circle Boston, MA 02115 (1)
Centre for Liver Research, School of Digestive and Liver diseases, IPGME&R, Kolkata- 700020, West bengal , INDIA (1)
Associate Professor Regional Centre for Biotechnology (1)
Proteomics Lab, Department of Biosciences and Bioengineering, IIT Bombay, Mumbai-400076, India. (1)
Functional Proteomics Institute of Cancer Research (1)
Professor of Biomolecular Chemistry at the University of Wisconsin - Madison (1)
IMSB, ETH Zurich (1)
Director, CSIR-INDIAN INSTITUTE OF CHEMICAL BIOLOGY, KOLKATA,INDIA (1)
Department of Pathology and Laboratory Medicine, College of Medicine, University of Saskatchewan, Canada (1)
Professor in Molecular Genetics and Microbiology Duke University School of Medicine Durham, NC (1)
Department of Cardiovascular & Metabolic Sciences, Cleveland Clinic Foundation, USA (1)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (1)
Member Cell and Molecular Biology Department St. Jude Children's Research Hospital Memphis, TN-38105 (1)
Associate Professor, Centre for Biosystems Science and Engineering, IISC Bangalore, India (1)
Helmholtz-Institute for Pharmaceutical Research Saarland (1)
Oncode Institute, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center Utrecht, the Netherland Department of Bionanoscience, Kavli Institute of Nanoscience Delft, Technische Universiteit Delft, Van der Maasweg 9, 2629 HZ Delft, the Netherlands. (1)
Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (1)
Proteomics lab, Indian Institute of Technology (IIT) Bombay (1)
Chief Scientist, Professor and Head, Cancer Biology Division CSIR-Central Drug Research Institute & AcSIR, LSS-006 Jankipuram Extension, Lucknow 226031, India (1)
Chemistry Department, University of Minnesota (1)
Dipyaman Ganguly, IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology, Kolkata, West Bengal , India, 700091 (1)
Department of Biology, Stanford University, USA (1)
Department of Biochemistry and Molecular Genetics, University of Anschutz Medical Campus, Aurora CO (1)

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(R)-Profens are substrate-selective inhibitors of endocannabinoid oxygenation by COX-2.

Not available

S-EPMC3298755 | biostudies-literature

Nucleophosmin integrates within the nucleolus via multi-modal interactions with proteins displaying R-rich linear motifs and rRNA.

Not available

S-EPMC4786410 | biostudies-literature

A mecA-negative strain of methicillin-resistant Staphylococcus aureus with high-level β-lactam resistance contains mutations in three genes.

Not available

S-EPMC2976154 | biostudies-literature

Lambda gpP-DnaB Helicase Sequestration and gpP-RpoB Associated Effects: On Screens for Auxotrophs, Selection for Rif(R), Toxicity, Mutagenicity, Plasmid Curing.

Not available

S-EPMC4926192 | biostudies-literature

Uncovering Protein Network in Extracellular Vesicles Derived from Hepatocellular Carcinoma Cell Line Influenced by Hepatitis B virus

Hepatocellular carcinoma (HCC) is the final sequel of prolonged chronic hepatitis B. Integrated network among cancer cells and various stromal cells exist in the HCC tumour microenvironment (TME) have profound impact on the progression of this disease. Emerging evidences depict that extracellular ve...

ORGANISM(S): Homo sapiens (Human)

2025-11-30 | PXD056246 | Pride

Hepatocellular carcinoma