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TranscriptomicsMaize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content
Following the domestication of maize over the past ,10,000 years, breeders have exploited the extensive genetic diversity of this species to mold its phenotype to meet human needs. The extent of structural variation, including copy number variation (CNV) and presence/absence variation (PAV), which a...
ORGANISM(S): Zea mays 
2009-11-19 | E-GEOD-16938 | biostudies-arrayexpress
TranscriptomicsNext-Generation Sequencing Identifies Differentially Expressed Genes in Embryonic Hearts Following Caffeine Treatment
Purpose: This study aimed to identify differentially expressed genes including alternative splice variants in embryonic ventricles following in utero caffeine treatment. Methods: Pregnant CD-1 mice were injected with 20 mg/kg of caffeine or vehicle control daily from embryonic day (E) 6.5-9.5. On E...
ORGANISM(S): Mus musculus 
2015-01-07 | E-GEOD-56902 | biostudies-arrayexpress
UnknownAdaptive expansion of the maize maternally expressed gene (Meg) family involves changes in expression patterns and protein secondary structures of its members.
Not available
S-EPMC4236715 | biostudies-literature
TranscriptomicsTranscriptome changes in soybean seeds resulting from RNAi suppression of seed storage proteins
We report the changes in transcriptome that results from RNAi suppression of 7S and 11S storage protein synthesis in soybean seeds, Proteomic results show that other proteins compensate for the storage protein shortfall. The transcriptome analysis show numerous changes result from suppressing storag...
ORGANISM(S): Glycine max 
2010-05-01 | E-GEOD-21116 | biostudies-arrayexpress
TranscriptomicsRegulation of Gene Expression and Parent-of-Origin Effects in Maize Hybrids
Heterosis (hybrid vigor) refers to the superior performance of hybrid progeny relative to their parents. Although widely exploited in agriculture, the mechanisms responsible for heterosis are not well understood. As a monoecious organism, a given maize plant can be used as both male and female par...
ORGANISM(S): Zea mays 
2009-11-20 | E-GEOD-16136 | biostudies-arrayexpress
TranscriptomicsGene Expression between two cell layers in maize shoot apical meristem
All above ground organs of higher plants are ultimately derived from shoot apical meristems (SAMs). The SAM exhibits distinctive structural organization, and monocot SAMs such as maize are comprised of two cell layers, a single cell layered tunica (L1) and a corpus (L2). Although recent research ha...
ORGANISM(S): Zea mays 
2013-01-28 | E-GEOD-16868 | biostudies-arrayexpress
TranscriptomicsThe maize leaf transcriptome
We have generated over 80 million 32 nt reads generated from RNA samples isolated from the tip and base of a developing Mo17 leaf. A comparision of these data with the maize AGP resulted in the confirmation of approximately 88% of the maize filtered gene set Keywords: Transcriptome analysis Examin...
ORGANISM(S): Zea mays 
2009-08-15 | E-GEOD-16916 | biostudies-arrayexpress
UnknownThe tomato genome sequence provides insights into fleshy fruit evolution.
Not available
S-EPMC3378239 | biostudies-literature
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