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GenomicsAuthentication and characterisation of a new oesophageal adenocarcinoma cell line: MFD-1
Whole genome sequencing (WGS) from snap-frozen oesophageal tumour tissue and germline nucleic acids isolated from peripheral blood mononuclear cells (PBMC) was performed as part of the International Cancer Genome Consortium project and OCCAMS consortium (1,2). Filtered read sequences were mapped to ...
ORGANISM(S): Homo sapiens 
2016-09-09 | E-MTAB-4600 | biostudies-arrayexpress
UnknownModelling of Immune Checkpoint Network Explains Synergistic Effects of Combined Immune Checkpoint Inhibitor Therapy and the Impact of Cytokines in Patient Response.
Not available
S-EPMC7761568 | biostudies-literature
TranscriptomicsGenome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP-arrays
We describe a method for automatic detection of absolute segmental copy numbers and genotype status in complex cancer genome profiles measured by SNP arrays. The method is based on pattern recognition of segmented and smoothed copy number and allelic imbalance profiles. Overall copy number assignmen...
ORGANISM(S): Homo sapiens 
2009-10-29 | E-GEOD-18799 | biostudies-arrayexpress
TranscriptomicsDeep-sequencing influences the results obtained in small-RNA sequencing
This study presents a comparison of small RNA sequencing libraries generated from the same cell lines but using different sequencing platforms and protocols. The samples were analyzed and compared at the level of miRNAs expression and as a population of small RNAs derived from repetitive elements. D...
ORGANISM(S): Mus musculus 
2012-03-01 | E-GEOD-35368 | biostudies-arrayexpress
UnknownDynamical Boolean Modeling of Immunogenic Cell Death.
Not available
S-EPMC7690454 | biostudies-literature
TranscriptomicsRestriction of LINE1 activity by RNAi correlates with mouse ES cell differentiation
Long interspersed elements 1 (LINE-1 or L1) are retrotransposons that dominate the mouse genomic landscape, and are expressed in Embryonic Stem Cells (ESCs), germ cells, and during early development. Based on clear precedents in plants and fission yeast, we investigated in this study a role for RNAi...
ORGANISM(S): Mus musculus 
2013-12-11 | E-GEOD-43110 | biostudies-arrayexpress
UnknownGlAIcomics: a deep neural network classifier for spectroscopy-augmented mass spectrometric glycans data.
Not available
S-EPMC10714470 | biostudies-literature
UnknownGenome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.
Not available
S-EPMC2810663 | biostudies-literature
TranscriptomicsPatients SAHGEN: cerebral vasospasm after subarachnoid hemorrhage
The diagnosis of cerebral vasospasm after Subarachnoid-Hemorrhage is currently very difficult, additional tools such as blood biomarkers are necessary. We tested the ability of gene expression profiles of blood cells to predict vasospasm. 32 patients suffering subarachnoid-hemorrhage were included i...
ORGANISM(S): Homo sapiens 
2014-05-08 | E-GEOD-37924 | biostudies-arrayexpress
UnknownsCellST predicts single-cell gene expression from H& E images.
Not available
S-EPMC12858858 | biostudies-literature
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