Bauer R R - OmicsDI

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Unknown (2249)
Transcriptomics (122)
Proteomics (64)
Genomics (35)
Metabolomics (8)

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Homo sapiens (119)
Mus musculus (29)
Arabidopsis thaliana (20)
Eohaustorius estuarius (11)
Saccharomyces cerevisiae (9)
Rattus norvegicus (6)
Drosophila melanogaster (4)
Daphnia pulex (3)
Gallus gallus (2)
Bombus terrestris (2)
Danio rerio (2)
Xenopus tropicalis (2)
Neurospora crassa OR74A (1)
Zea mays (1)
Helicobacter pylori (1)
Candida albicans (1)
Escherichia coli (1)
Nicotiana tabacum (1)

Repository

biostudies-arrayexpress (125)
pride (56)
EGA (31)
MetaboLights (8)
MassIVE (5)
PeptideAtlas (2)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (18)
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Blood serum (1)

Disease

Chronic myeloid leukemia (2)
Multiple sclerosis (1)
Acute leukemia (1)
Acute myeloid leukemia (1)
Cardiomyopathy (1)
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Colorectal adenocarcinoma (1)
Coronavirus infectious disease (1)
Glioblastoma (1)
Lung carcinoma (1)
Neurological dysfunction (1)
Non-small cell lung carcinoma (1)
Obesity (1)
Osteosarcoma (1)
Parkinson's disease (1)
Prostate adenocarcinoma (1)
Severe acute respiratory syndrome (1)
Skin melanoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (56)
Shotgun proteomics (33)
Bottom-up proteomics (15)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (5)
Gel-based experiment (5)
Data-independent acquisition (3)
Illumina HiSeq 2000 (2)
Immunopeptidomics (2)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2000, HumanMethylation450k Bead Chip - Genome Studio, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 4000, ILLUMINA (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Affinity proteomics (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (3)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
ScanArray Express HT [PerkinElmer] (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap XL (1)
Q Exactive HF (1)
Bruker (1)
Liquid Chromatography MS - HILIC (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS – HILIC (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (1)
Q Exactive (Thermo Scientific) (1)
LTQ Orbitrap (1)
LTQ-Orbitrap (1)

Publication Date

2015 (29)
2013 (19)
2011 (18)
2024 (16)
2008 (15)
2012 (11)
2010 (11)
2014 (10)
2025 (9)
2023 (9)
2026 (7)
2022 (7)
2009 (7)
2020 (6)
2016 (6)
2017 (4)
2021 (4)
2018 (3)
2019 (3)
2007 (1)
2004 (1)

UNIPROT ID/AC

A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1V9 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0B4J220 (1)
A0AV02 (1)
A0AVT1 (1)
A0EQY3 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0JLQ7 (1)
A0PJC8 (1)
A0PJD7 (1)
A1A558 (1)
A1A596 (1)
A1E5T5 (1)
A1IGX7 (1)
A1L013 (1)
A1L0U3 (1)
A1L0U6 (1)
A1L317 (1)
A1L347 (1)
A1L366 (1)
A1L3B6 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSMUSG00000021039 (1)
ENSMUSG00000032652 (1)
ENSMUSG00000090272 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:30769 (3)
CHEBI:1427 (2)
CHEBI:15741 (2)
CHEBI:16828 (2)
CHEBI:17275 (2)
CHEBI:30763 (2)
CHEBI:1148 (1)
CHEBI:11563 (1)
CHEBI:131690 (1)
CHEBI:132712 (1)
CHEBI:133142 (1)
CHEBI:133145 (1)
CHEBI:133148 (1)
CHEBI:134016 (1)
CHEBI:134255 (1)
CHEBI:136548 (1)
CHEBI:137478 (1)
CHEBI:137479 (1)
CHEBI:137481 (1)
CHEBI:137482 (1)
CHEBI:137484 (1)
CHEBI:137492 (1)
CHEBI:137493 (1)
CHEBI:137496 (1)
CHEBI:137499 (1)
CHEBI:137501 (1)
CHEBI:137503 (1)
CHEBI:137505 (1)
CHEBI:137506 (1)
CHEBI:137508 (1)

Metabolite Name

(+)-catechin (1)
(+)-epigallocatechin (1)
(+/-)salipurposide (1)
(-)-epicatechin-(4alpha->8)-(-)-epicatechin (1)
(-)-epigallocatechin (1)
(2E)-3-Phenyl-2-propen-1-yl-6-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside (1)
(2E)-3-Phenyl-2-propen-1-yl-6-O-beta-D-xylopyranosyl-beta-D-glucopyranoside (1)
(2R,3R)-2,3-Dihydroxy-3-methylpentanoate (1)
(Z)-tamarindienal (1)
(aR)-3',3"'-dimethoxycupressuflavone (1)
(aR)-3'-methoxycupressuflavone (1)
1,5-Diaminopentane (1)
1-O-vanilloyl-beta-D-glucose (1)
1-nitroheptane (1)
18-beta-glycyrrhetinic acid (1)
2'-O-acetylsalicin (1)
2'-acetylsalicortin (1)
2,3-dihydroxybenzoic acid (1)
2,6-dihydroxybenzoic acid (1)
2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate (1)
2-amino-3-methoxy-benzoic acid (1)
2-aminomuconic acid semialdehyde (1)
2-hydroxy-4-methylvaleric acid (1)
2-hydroxybutyrate (1)
2-hydroxyvalerate (1)
2-isopropylmaleic acid (1)
3'-O-acetylsalicin (1)
3'-O-benzoylsalicin (1)
3'-acetylsalicortin (1)
3,4-dihydroxybenzoic acid (1)

First Public Date

2018 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (101)
RNA-seq of coding RNA (6)
Unknown experiment type (4)
Transcription profiling by tiling array (3)
Comparative genomic hybridization by array (3)
ChIP-seq (3)
Human - High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (266)
2021 (250)
2023 (239)
2024 (229)
2025 (221)
2020 (176)
2019 (152)
2015 (120)
2018 (113)
2017 (104)
2016 (88)
2014 (84)
2013 (66)
2011 (60)
2012 (43)
2010 (43)
2026 (39)
2009 (28)
2008 (23)
2007 (7)
2006 (4)
2005 (3)
2000 (3)
1999 (3)
1998 (3)
2004 (2)
2003 (2)
2001 (2)
2002 (1)

Lab affiliation

Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
1 German Cancer Consortium of Translational Cancer Research (DKTK) and German Cancer Research Center (DKFZ), Heidelberg, Germany 2 IIIrd Medical Department, Klinikum rechts der Isar, School of Medicine, Technical University of Munich, Munich, Germany 3 Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Munich, Germany (1)
1) German Center for Neurodegenerative Diseases (DZNE), 72076 Tübingen, Germany (2) University of Tübingen, Center for Ophthalmology, Institute for Ophthalmic Research, 72074 Tübingen, Germany (1)
Biozentrum, University of Basel (1)
Biozentrum, University of Basel, 4056 Basel, Switzerland (1)
CMB - Center for Molecular Biomedicine Hans-Knöll-Str. 2 07745 Jena (1)
CMB - Center for Molecular Biomedicine Hans-Knöll-Str. 2 07745 Jena (1)
Centre for Medicines Discovery & Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK (1)
Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford, UK. Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford, UK. (1)
Centre for Medicines Discovery, Nuffield Department of Medicine; Oxford OX3 7BN, UK. Target Discovery Institute, Nuffield Department of Medicine; Oxford OX3 7BN, UK. (1)
Chief Scientific Officer, Pelago Bioscience AB (1)
Chief Scientific Offiser, Pelago Bioscience AB (1)
Clinical Collaboration Unit Translational Immunology, German Cancer Consortium (DKTK), Department of Internal Medicine, University Hospital Tübingen, Tübingen, Germany (1)
Clinical Collaboration Unit Translational Immunology, University Hospital Tübingen, Tübingen, Germany (1)
Department for Cell Biology Biomedical Center (BMC) Medical Faculty, LMU Großhaderner Straße 9, 82152 Planegg-Martinsried, Germany (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (1)
Department of Dermatology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Department of Genetics, Department of Radiation Oncology, Cancer Genomics Netherlands, Erasmus Medical Center Cancer Institute, Rotterdam, The Netherlands (1)
Department of Hematology and Oncology, University of Tübingen, Germany (1)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, BW, Germany (1)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, Germany (1)
Department of Peptide-based Immunotherapy, University and University Hospital Tuebingen, Germany (1)
Department of Peptide-based Immunotherapy, University and University Hospital Tübingen, Tübingen, Germany (1)
Department of Physiological Genomics Department for Cell Biology & Anatomy Medical Faculty Biomedical Center (BMC) Ludwig-Maximilians-University, 82152 Planegg-Martinsried, Germany (1)
Department of Tumor Biology, University Medical Center Hamburg‑Eppen‑dorf, Martinistraße 52, 20246 Hamburg, Germany. (1)
Derpartmen of Dermatology Medical University of Vienna (1)
Devision of Molecular Systems Biology, University of Vienna, Austria (1)
Discovery Biology, AstraZeneca Pharmaceuticals (1)

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ER stress regulates myeloid-derived suppressor cell fate through TRAIL-R-mediated apoptosis.

Not available

S-EPMC4038578 | biostudies-literature

Approaching complete inhibition of P-glycoprotein at the human blood-brain barrier: an (R)-[11C]verapamil PET study.

Not available

S-EPMC4420865 | biostudies-literature

Discovery of a biomarker and lead small molecules to target r(GGGGCC)-associated defects in c9FTD/ALS.

Not available

S-EPMC4232217 | biostudies-literature

Characterization of Constituents with Potential Anti-Inflammatory Activity in Chinese Lonicera Species by UHPLC-HRMS Based Metabolite Profiling

This study centered on detecting potentially anti-inflammatory active constituents in ethanolic extracts of Chinese Lonicera species by taking an UHPLC-HRMS-based metabolite profiling approach. Extracts from eight different Lonicera species were subjected to both UHPLC-HRMS analysis and to pharmacol...

2022-11-17 | MTBLS3112 | MetaboLights

Senataxin RNA/DNA helicase promotes replication restart at co-transcriptional R-loops to prevent MUS81-dependent fork degradation.

Not available

S-EPMC11417401 | biostudies-literature

Immunohistochemical quantification of the cobalamin transport protein, cell surface receptor and Ki-67 in naturally occurring canine and feline malignant tumors and in adjacent normal tissues.

Not available

S-EPMC4385855 | biostudies-literature

The ALPK1/TIFA/NF-κB axis links a bacterial carcinogen to R-loop-induced replication stress.

Not available

S-EPMC7547021 | biostudies-literature

Members of the PpaA/AerR Antirepressor Family Bind Cobalamin.

Not available

S-EPMC4507344 | biostudies-literature

Heterogeneity of gene expression in stromal fibroblasts of human breast carcinomas and normal breast

Twenty-one genes (27 probe sets) were up-regulated in CAF, as compared with NF. Known functions of these genes relate to paracrine or intracellular signaling, transcriptional regulation, extracellular matrix and cell adhesion/migration. Ten genes (14 probe sets) were down-regulated in CAF, including...

ORGANISM(S): Homo sapiens

2010-02-21 | E-GEOD-20086 | biostudies-arrayexpress

RNA-seq of human peripheral blood mononuclear cells exposed to red blood cells infected with Plasmodium falciparum

Peripheral Blood Mononuclear Cells were isolated from three individuals. Cells from these biological replicates were exposed to Red Blood Cells (male donor age 27) infected with Plasmodium falciparum, uninfected Red Blood Cells, or RPMI prior to stimulation with PAM3CSK4 (10g/mL) for 0, 4, and 12 h...

ORGANISM(S): Homo sapiens

2020-05-15 | E-MTAB-9066 | biostudies-arrayexpress

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