Be(2)-c - OmicsDI

OmicsDI

Browse
Submit Data
Databases
API
Help

253227 Results

Show all Save search Copy query

Show results for

Unknown (222624)
Genomics (16643)
Transcriptomics (7872)
Proteomics (3368)
Clinical (1209)
Other (461)
Models (401)
Methylation profiling (305)
Genomic (223)
Metabolomics (93)
Multiomics (39)

Organisms

Homo sapiens (5419)
Mus musculus (3226)
Arabidopsis thaliana (306)
Saccharomyces cerevisiae (224)
Escherichia coli (73)
Severe acute respiratory syndrome coronavirus 2 (35)
cellular organisms (28)
Xenopus laevis (22)
Eukaryota (8)
Mammalia (6)
Helicobacter pylori (6)
Chordata (4)
Mus sp. (3)
Nakaseomyces glabratus (3)
Opisthokonta (2)
Aspergillus niger (2)
Plasmodium knowlesi (1)
Alphainfluenzavirus (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 (1)
Cancer (1)
Cryptococcus neoformans (1)
Eremothecium gossypii FDAG1 (1)
Clavispora lusitaniae (1)
Sporobolomyces roseus (1)
Aspergillus terreus (1)
Fusarium oxysporum (1)
Sclerotinia sclerotiorum (1)
Histoplasma capsulatum (1)
Chaetomium globosum (1)
Lodderomyces elongisporus (1)

Organisms

Homo sapiens (4958)
Mus musculus (3159)
Rattus norvegicus (342)
Arabidopsis thaliana (333)
Saccharomyces cerevisiae (167)
Drosophila melanogaster (143)
Danio rerio (112)
Bos taurus (90)
Sus scrofa (71)
Bacteria (67)
Gallus gallus (44)
Oryza sativa (41)
Zea mays (37)
Severe acute respiratory syndrome coronavirus 2 (36)
Macaca mulatta (35)
Escherichia coli (35)
Canis lupus familiaris (31)
soil metagenome (30)
Glycine max (25)
Schizosaccharomyces pombe (23)
synthetic construct (21)
Mesocricetus auratus (20)
Caenorhabditis elegans (20)
mouse gut metagenome (20)
Ovis aries (19)
Solanum lycopersicum (19)
Escherichia coli str. K-12 substr. MG1655 (18)
Staphylococcus aureus (16)
Xenopus laevis (15)
Plasmodium falciparum (15)

Repository

ENA (14450)
geo (8096)
biostudies-arrayexpress (1994)
pride (1587)
PAXDB (739)
EGA (711)
MassIVE (544)
BioModels (360)
iProX (226)
dbGaP (223)
jPOST (169)
PanoramaPublic (56)
GNPS (53)
LINCS (44)
MetaboLights (37)
GPMDB (29)
PeptideAtlas (25)
FAIRDOMHub (20)
Cell Collective (17)
EVA (15)
PMR (4)
NODE (3)
MetabolomicsWorkbench (1)

Tissue

Cell culture (300)
Epithelial cell (93)
Brain (89)
Blood (87)
Blood plasma (55)
Permanent cell line cell (52)
Leaf (47)
Liver (39)
Lung (33)
Heart (30)
Plant cell (30)
B cell (29)
Fibroblast (28)
Kidney (27)
Whole body (27)
T cell (26)
Colon (23)
Stem cell (22)
Blood cell (21)
Macrophage (21)
Blood serum (20)
Skin (20)
Bone marrow (18)
Cell suspension culture (17)
Early embryonic cell (17)
Others (12)
Cultured cells (1)
Bone marrow CD45+ cells (1)
Esophageal cancer (1)
Pancreas (1)

Disease

Breast cancer (32)
Normal (16)
Type 2 diabetes mellitus (15)
COVID-19 (14)
Lymphoma (14)
Alzheimer's disease (10)
Parkinson's disease (10)
Lung cancer (10)
Tuberculosis (6)
Multiple myeloma (5)
Amyotrophic lateral sclerosis (5)
Chronic lymphocytic leukemia (5)
Cancer (3)
Pancreatic cancer (3)
Neurodegenerative disease (2)
Diabetes mellitus (2)
Asthma (2)
None (2)
Prion disease (1)
Benign glioma (1)
Primary bacterial infectious disease (1)
Huntington's disease (1)
Peptic ulcer disease (1)
Duodenal ulcer (1)
Non-Hodgkin lymphoma (1)
Complement deficiency (1)
Prostate cancer (1)
Pertussis (1)
Congential heart disease (1)
Astrocytomas (1)

Technology Type

Illumina HiSeq 2000 (45)
Unknown, Affymetrix 500K (11)
Illumina MiSeq (7)
Affymetrix 500K, unknown (6)
Illumina HiSeq 2000, ILLUMINA (6)
Illumina HiSeq 2500, ILLUMINA (5)
Illumina HiSeq 2500 (5)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (3)
Illumina Human Omni5 Bead Chip (2)
ILLUMINA, NextSeq 500 (2)
ILLUMINA, Illumina HiSeq 2500 (2)
Illumina Genome Analyzer II (2)
Illumina Oncoscan Array (1)
Illumina HumanOmni2.5-8 (1)
ILLUMINA, NextSeq 500, HiSeq X Ten (1)
Illumina Omni 2.5 (1)
COMPLETE_GENOMICS, Complete Genomics (1)
ILLUMINA, Illumina HiSeq 4000 (1)
PacBio RS II, PACBIO_SMRT (1)
Illumina HumanOmniExpress-FFPE-12 v1.0 BeadChip (1)
Illumina MiSeq, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
Illumina HiSeq 4000, ILLUMINA (1)
NextSeq 500, Illumina HiSeq 2000, ILLUMINA (1)
MeDIP-seq (1)
HiSeq X Ten, ILLUMINA (1)
Agilent 180K, Affymetrix GeneChip Human Exon 1.0 ST, Liquid chromatographyâ€“mass spectrometry, Illumina 1M SNP Array, Agilent SurePrint Human miRNA Microarray, Illumina HiSeq 2000, Agilent 244K, Agilent 44K, Illumina Genome Analyzer II (1)
ILLUMINA, Illumina MiSeq (1)
Illumina OMNIExpress, Affymetrix_6.0, HanChinese_Immunochip (1)
Illumina Human 660K Quad BeadChips - Illuminus, GenoSNP, unknown, Illumina HumanHap 550K, Affymetrix 500K, Illumina Human 1.2M Duo custom BeadChips v1 - Genome Studio, Illumina HumanHap 550, Illumina HumanHap300-Duo, Illumina_Human660W-Quad_v1_A-Not supplied, Illumina Human-Ref 8 v3.0 expression array, Affymetrix_U133plus2-, Illumina 1.2M, Illumina ImmunoBeadChip - Illuminus, Affymetrix 6.0, Illumina 15K, Infinium 550K, Affymetrix_250K(Nsp) - gtype (1)

Instrument Platform

Illumina HiSeq 2500 (22)
Illumina NovaSeq 6000 (18)
NextSeq 500 (13)
Illumina Genome Analyzer II (12)
Illumina HiSeq 2000 (11)
Illumina Genome Analyzer IIx (7)
Illumina MiSeq (6)
Illumina HiSeq 1000 (2)
Illumina HiSeq 4000 (2)
(Make:Affymetrix Scanner,Model:) (1)
ATR03 reader (1)
Beckman Optima L-90K (1)
NanoDrop ND-2000 (Thermo Scientific),Agilent Bioanalyzer 2100 (1)
PacBio RS II (1)
MiniSeq (1)
Affymetrix GeneChip(R) HT Scanner (1)
Ultra-Turrax, Photometer, Bioanalyzer (1)
Affymetrix GeneChip Scanner 3000 (1)
Illumina Genome Analyzer (1)
Agilent G2505B scanner (1)
ScanArray Lite [PerkinElmer] (1)
Axon- GenePix4000B (1)
Agilent Scanner G2505C (1)
NA (1)
Illumina MiniSeq (1)
N/a (1)
10x Genomics Chromium Controller (1)
NextSeq 2000 (1)
DNBSEQ-G400 (1)
BGISEQ-500 (1)

Publication Date

2024 (1221)
2023 (1106)
2022 (1043)
2025 (977)
2021 (856)
2020 (854)
2014 (647)
2026 (639)
2012 (629)
2015 (621)
2016 (614)
2013 (603)
2010 (576)
2019 (566)
2018 (519)
2017 (464)
2011 (444)
2008 (392)
2007 (331)
2009 (273)
2005 (164)
2006 (122)
2004 (65)
2003 (23)
2002 (6)
2001 (3)

UNIPROT ID/AC

P04049 (8)
Q02750 (8)
P27361 (7)
P61225 (5)
P01308 (5)
P42336 (5)
P27986 (5)
P31749 (5)
P04637 (5)
P51452 (4)
P00533 (4)
P28482 (4)
P35568 (3)
Q9NP59 (3)
P07101 (3)
P00441 (3)
P19174 (3)
P48736 (3)
O15327 (3)
Q96PE3 (3)
O15357 (3)
P35228 (3)
P07203 (3)
Q9NY65 (3)
P11166 (3)
P00338 (3)
P30838 (3)
Q05940 (3)
O00459 (3)
P04040 (3)

ENSEMBL ID

ENSG00000170477 (10)
ENSG00000147251 (7)
ENSG00000247315 (5)
ENSG00000141510 (2)
ENSG00000135679 (2)
NewID (1)
ENSG00000147889 (1)
ENSG00000229353 (1)
ENSMUSG00000021039 (1)
ENSMUSG00000090272 (1)
ENSMUSG00000096833 (1)
ENSMUSP00000106991 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141542 (1)

CHEBI ID

CHEBI:29033 (77)
CHEBI:17029 (75)
CHEBI:27402 (75)
CHEBI:52329 (74)
CHEBI:52327 (74)
CHEBI:52977 (74)
CHEBI:52328 (74)
CHEBI:29034 (74)
CHEBI:49183 (74)
CHEBI:52325 (73)
CHEBI:61540 (73)
CHEBI:31013 (73)
CHEBI:52976 (72)
CHEBI:52326 (72)
CHEBI:52324 (72)
CHEBI:48943 (72)
CHEBI:37671 (72)
CHEBI:52385 (71)
CHEBI:52384 (71)
CHEBI:52975 (71)
CHEBI:17309 (71)
CHEBI:52980 (71)
CHEBI:53065 (71)
CHEBI:53064 (71)
CHEBI:52966 (71)
CHEBI:60448 (71)
CHEBI:52962 (71)
CHEBI:48945 (71)
CHEBI:46970 (71)
CHEBI:52320 (71)

Metabolite Name

Taurine (12)
Glycine (11)
2'-deoxyuridine (10)
Phenylalanine (10)
Tyrosine (10)
Choline (10)
Alanine (10)
Cholesterol (9)
2'-deoxycytidine (9)
5-oxoproline (9)
Xanthosine (9)
Uridine (9)
Serine (9)
Proline (9)
Lysine (9)
Inosine (9)
Hypoxanthine (9)
Guanosine (9)
Cytidine (9)
Cysteine (9)
Carnitine (9)
Arginine (9)
3-phosphoglycerate (9)
Histidine (9)
Urea (9)
Methionine (9)
Creatinine (9)
Creatine (9)
Valine (9)
Isoleucine (9)

First Public Date

2014 (2719)
2024 (1556)
2025 (1300)
2022 (1255)
2023 (1210)
2021 (1109)
2020 (957)
2026 (832)
2019 (796)
2018 (641)
2017 (617)
2015 (538)
2013 (491)
2016 (395)
2012 (13)
2011 (11)
2010 (10)

Modelling Approach

Ordinary differential equation model (186)
Constraint-based model (102)
Machine learning (12)
Differential equation model (7)
Physiologically based pharmacokinetic model (5)
Population model (5)
Computational model (4)
Logical model (4)
Differential algebraic equation model (2)
Boolean model (2)
Cellular potts model (2)
Fuzzy logic model (1)
Support-vector machine (1)
Petri net (1)
Mathematical model (1)
Steady-state model (1)
Delayed differential equation model (1)
Other (1)
Metabolic network (1)

Study status

Completed (494)
Recruiting (299)
Not yet recruiting (115)
Terminated (87)
Not provided (84)
Active, not recruiting (81)
Withdrawn (23)
Ongoing (11)
Enrolling by invitation (10)
Suspended (4)
Other (1)

Lab affiliation

Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (10)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (9)
School of Life Sciences, University of Warwick (9)
Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China (6)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland (5)
MDC (5)
Mass Spectrometry Facility, Department of Chemistry and Biochemistry, San Francisco State University, USA (5)
Professor of Molecular Physiology, Leiden Institute of Chemistry, Leiden University, The Netherlands (5)
Yale University (5)
DEPARTMENT OF MEDICINE, ALL INDIA INSTITUTE OF MEDICAL SCIENCES, ANSARI NAGAR, NEW DELHI-110029 (4)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (4)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (4)
Zhejiang University (4)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (3)
Bioplatforms Australia (3)
Center for Translational Vision Research, Department of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA, 92697, USA; Department of Physiology and Biophysics, Department of Chemistry, Department of Molecular Biology and Biochemistry; University of California, Irvine, Irvine, CA, 92697, USA (3)
Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais (3)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (3)
ETH Zurich, Institute of Molecular Systems Biology, Zurich, Switzerland (3)
Huangshan University (3)
Max Planck Institute for the Science of Human History Department of Archaeogenetics (3)
Moffitt Cancer Center Tampa, FL, USA (3)
Molecular Oncology Chemical Biology and Molecular Medicine Moffitt Cancer Center (3)
State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China. (3)
UCSF (3)
University of Colorado Boulder (3)
University of Edinburgh (3)
University of Florida (3)
1. Wellcome Trust Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, UK 2. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Germany (2)

Keyword

Oxaliplatin (66)
Irinotecan (62)
Leucovorin (58)
Capecitabine (56)
Fluorouracil (55)
Bevacizumab (50)
Cetuximab (44)
Colorectal (25)
Levoleucovorin (25)
Colonoscopy (23)
Metastatic (21)
Screening (21)
Pembrolizumab (20)
Folic Acid (17)
Chemotherapy (16)
Panitumumab (14)
Antibodies (14)
Antibodies, Monoclonal (13)
Colorectal cancer screening (12)
CRC (12)
Immunotherapy (11)
Durvalumab (10)
Nivolumab (10)
Immunoglobulins (10)
Antineoplastic Agents, Immunological (9)
Cyclophosphamide (7)
Regorafenib (7)
Exercise (7)
Advanced (7)
Gemcitabine (6)

IsPrivate

False (360)

Model Flag

Non Kinetic (79)
Non Miriam (1)

Submitter Keywords

Immuno-oncology (20)
Machine Learning Model (17)
FAIR-AIML (15)
FROG (14)
Ersilia (13)
Not Peer Reviewed (7)
COVID-19 (7)
Oncology (1)
TransQST (1)

Classification

bacteria (308)
viruses (73)
fungi (44)
protozoa (41)
helminths (2)

Modification

15.994915 (8)
57.021464 (8)
2x(15)N labeled L-lysine (6)
4x(15)N labeled L-arginine (6)
-17.026549 (3)
42.010565 (3)
N6-dimethyl-L-lysine (3)
-18.010565 (2)
6.020129 (2)
79.966331 (2)
Not available (2)
+3amu) (1)
10.008269 (1)
127.063329 (1)
15.9949 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
45.029395 (1)
57.0215 (1)
6x(2)H labeled dimethylated L-arginine (1)

Study type

Transcription profiling by array (1178)
RNA-seq of coding RNA (193)
ChIP-seq (106)
Unknown experiment type (103)
RNA-seq of non coding RNA (61)
Other (58)
Comparative genomic hybridization by array (53)
Methylation profiling by array (43)
ChIP-chip by tiling array (35)
Proteomic profiling by array (22)
Genotyping by array (18)
RNA-seq of coding RNA from single cells (17)
Transcription profiling by SAGE (14)
Methylation profiling by high throughput sequencing (14)
Transcription profiling by tiling array (13)
DNA-seq (10)
RNAi profiling by array (7)
ChIP-chip by array (7)
MicroRNA profiling by array (7)
Transcription profiling by RT-PCR (6)
CLIP-seq (3)
Antigen profiling (3)
Metabolomic profiling (2)
Genotyping by high throughput sequencing (2)
RNA-seq of total RNA (2)
Animal - Two-color microarray (1)
Tiling path by array (1)
Animal - One-color microarray (1)
MicroRNA profiling by high-throughput sequencing (1)
Human - Single-cell sequencing (1)

Release Date

2022 (29647)
2021 (25865)
2023 (24252)
2020 (19450)
2024 (17365)
2025 (16153)
2019 (14494)
2018 (12372)
2017 (10221)
2016 (9217)
2015 (8916)
2014 (8038)
2013 (5087)
2012 (4541)
2011 (3781)
2010 (3326)
2009 (2547)
2008 (2043)
2026 (1891)
2007 (1368)
2006 (964)
2005 (773)
2004 (497)
2003 (470)
2002 (343)
2001 (296)
2000 (279)
1999 (189)
1998 (133)
1997 (38)

Location

United States (336)
Australia (168)
United Kingdom (130)
France (106)
Germany (102)
Spain (97)
Italy (89)
Netherlands (72)
Japan (68)
Canada (66)
Iran (56)
Belgium (53)
China (52)
South Korea (39)
India (35)
Denmark (30)
Poland (28)
New Zealand (25)
Austria (25)
Brazil (23)
Sweden (22)
Taiwan (21)
Israel (19)
Hungary (19)
Switzerland (17)
Norway (16)
Greece (16)
Czechia (15)
Russia (14)
Argentina (14)

Previous page
1 / 25323
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 25323
Next page

Sort by:

Relevance

Page size

Spirulina Prevents Hepatic Steatosis by Promoting Macrophage M2 Polarization via Gut Microbiota-Derived 2-Hydroxy-3-Methylbutyrate

Background & Aims:

Spirulina, a microalgae renowned for its nutrient density, shows promise in modulating glucose and lipid metabolism. However, its efficacy and underlying mechanisms against metabolic dysfunction-associated steatotic liver disease (MASLD) remain unclear. We hypothesize...

2026-01-11 | MTBLS13653 | MetaboLights

Spirulina Prevents Hepatic Steatosis by Promoting Macrophage M2 Polarization via Gut Microbiota-Derived 2-Hydroxy-3-Methylbutyrate

Background & Aims:

2026-01-12 | MTBLS13657 | MetaboLights

Spirulina Prevents Hepatic Steatosis by Promoting Macrophage M2 Polarization via Gut Microbiota-Derived 2-Hydroxy-3-Methylbutyrate

Background & Aims: Spirulina, a microalgae renowned for its nutrient density, shows promise in modulating glucose and lipid metabolism. However, its efficacy and underlying mechanisms against metabolic dysfunction-associated steatotic liver disease (MASLD) remain unclear. We hypothesized that spirul...

2026-06-30 | MTBLS14903 | MetaboLights

Giardia duodenalis strain:Be-2

Giardia duodenalis strain:Be-2 Genome sequencing

PRJNA901457 | ENA

Spirulina Prevents Hepatic Steatosis by Promoting Macrophage M2 Polarization via Gut Microbiota-Derived 2-Hydroxy-3-Methylbutyrate

2026-06-30 | MTBLS14901 | MetaboLights

ZRF1 knockdown with shRNA in SK-N-BE(2) cells

PRJNA714635 | ENA

Expression analysis of ethanol treatment on SK-N-BE(2)

PRJNA543781 | ENA

Gene expression profiles of BE(2)N expressing Dn-hTERT

PRJNA719364 | ENA