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TranscriptomicsChange in gene expression in Chlamydomonas reinhardtii upon heat shock
This was an accompanying experiment. Previously, the expression of genes hsp70A and hsp70B had been established as being tetrapyrrole-dependent (Kropat et al., 1997, 2000). Since both are well-known heat-shock proteins, we performed a one-step heat shock treatment by shifting the temperatures from 2...
ORGANISM(S): Chlamydomonas reinhardtii 
2011-03-02 | E-GEOD-20859 | biostudies-arrayexpress
UnknownNitric oxide inhibits glomerular TGF-beta signaling via SMOC-1.
Not available
S-EPMC2736775 | biostudies-literature
TranscriptomicsTranscriptome profiling of human urothelial carcinoma cell lines RT-112, VM-Cub-1, SW1710, UMUC3 and a benign urothelial control HBLAK engineered to stably express HDAC5 against their vector control
Aberrant expression of histone deacetylases (HDACs) and their activity are associated with a broad range of tumor development. However, based on cell or tissue types, class IIA HDACs such as HDAC4 and HDAC5 may facilitate or inhibit cancer progression. The goal of this project is to examine the gene...
ORGANISM(S): Homo sapiens 
2019-11-13 | E-MTAB-8418 | biostudies-arrayexpress
ProteomicsDirect visualization of ERAD nanocompartments within the cell
ER-associated degradation (ERAD) is an evolutionarily-conserved quality control mechanism where misfolded proteins are removed from the endoplasmic reticulum (ER) and degraded by the ubiquitin-proteasome system. While many ERAD-mediating proteins have been identified, it is unknown how they are spat...
ORGANISM(S): Chlamydomonas reinhardtii 
2020-05-26 | PXD009375 | Pride
Erad electron microscopy 
ProteomicsIdentification of microtubule associated proteins
To find out the identities of microtubule-associated proteins whose abundances are visibly reduced in presence of Taxol. For this experiment, microtubule-associated proteins are pulleddown after treatment with Taxol. Untreated cells are used as a control.
ORGANISM(S): Homo sapiens (Human) 
2025-05-06 | PXD035700 | Pride
Microtubule associated proteins  human  mitosis 
TranscriptomicsA daily temporal program for rhythmic expression of protein-coding and non-coding genes in response to light and dark in Synechocystis sp. PCC 6803
We investigated Synechocystis high-density microarray data of three high-resolution time-series experiments with alternating light/dark rhythm, transition to continuous light, and transition to continuous darkness. Using M-bM-^@M-^Xleast oscillating setM-bM-^@M-^Y normalization and a clustering appr...
ORGANISM(S): Synechocystis sp. PCC 6803 
2013-05-30 | E-GEOD-47482 | biostudies-arrayexpress
Genomicsbe40ebac-acee-4026-a661-4330bb0f657b - samples
Bam files for 124 samples (62 tumor vs blood pairs); Whole Genome Sequencing performed on Illumina HiSeq X Ten
EGAD00001005061 | EGA
Genomicsbc246e56-19ea-4c30-9e33-160ac12c3050 - samples
Bam files for 16 meningioma tumor samples; ChIPseq performed on Illumina HiSeq 2000
EGAD00001005021 | EGA
GenomicsMutational patterns and regulatory networks in epigenetic subgroups of meningioma (H033)
DNA methylation patterns delineate clinically relevant subgroups of meningioma. We previously established the six meningioma methylation classes (MC) benign-1, 2, 3, intermediate-A, B and malignant. Here, we set out to identify subgroup-specific mutational patterns and pathway regulation. Whole-gen...
EGAS00001003481 | EGA
GenomicsData Access Committee of divisions B060 and B062, German Cancer Research Center (DKFZ)
Data Access Committee EGAC00001000219
EGAC00001000219 | EGA
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