Becker G G - OmicsDI

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Unknown (2416)
Transcriptomics (214)
Proteomics (125)
Genomics (25)
Metabolomics (16)
Genomic (2)
Multiomics (1)

Organisms

Homo sapiens (131)
Mus musculus (89)
Drosophila melanogaster (22)
Rattus norvegicus (15)
Rhizobium leguminosarum (14)
Medicago truncatula (9)
Saccharomyces cerevisiae (8)
Arabidopsis thaliana (5)
Yersinia pseudotuberculosis (4)
Staphylococcus aureus (4)
Bacillus amyloliquefaciens (3)
Escherichia coli (3)
Azoarcus sp. (2)
synthetic construct (2)
Danio rerio (2)
Sinorhizobium meliloti 1021 (2)
Bacteria (2)
Paracoccus denitrificans PD1222 (1)
Colletotrichum higginsianum (1)
Staphylococcus aureus subsp. aureus NCTC 8325 (1)
Cervus elaphus (1)
Physcomitrium patens (1)
Plasmodium falciparum 3D7 (1)
Nicotiana tabacum (1)
Bacillus subtilis (1)
Plasmodium falciparum (1)
Burkholderia cenocepacia (1)
Sus scrofa (1)
Arcobacter (1)
Bacteroides thetaiotaomicron VPI-5482 (1)

Organisms

Mus musculus (2)
Homo sapiens (1)

Repository

biostudies-arrayexpress (223)
pride (117)
MetaboLights (15)
EGA (12)
MassIVE (6)
ENA (4)
dbGaP (2)
PanoramaPublic (2)
geo (1)
GNPS (1)

Tissue

Cell culture (40)
Epithelial cell (7)
Brain (6)
Colon (5)
Fibroblast (4)
Kidney (4)
Lung (4)
Permanent cell line cell (4)
Early embryonic cell (3)
HeLa cell (3)
Heart (3)
Primary cell (3)
Blood (2)
Blood serum (2)
Embryonic fibroblast (2)
T cell (2)
B cell (1)
Blood cell (1)
Cell suspension culture (1)
Central nervous system (1)
Cerebrospinal fluid (1)
Dendritic cell (1)
Diaphragm (1)
Epithelial cell of cervix (1)
Extracellular matrix (1)
Feces (1)
Gametophyte (1)
HCT-116 cell (1)
HTERT-RPE1 cell (1)
Hemolymph (1)

Disease

Colon cancer (7)
Acute myeloid leukemia (2)
Disease free (2)
Lung cancer (2)
Acute leukemia (1)
Alzheimer's disease (1)
Becker muscular dystrophy (1)
Breast cancer (1)
Cancer (1)
Cervix carcinoma (1)
Crohn's disease (1)
Diaphragm disease (1)
Duchenne muscular dystrophy (1)
Lung carcinoma (1)
Malaria (1)
Non-small cell lung carcinoma (1)
Parkinson's disease (1)
Primary autosomal recessive microcephaly (1)
Seckel syndrome (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Skin melanoma (1)
Urinary system benign neoplasm (1)

Technology Type

Mass Spectrometry (117)
Shotgun proteomics (58)
Bottom-up proteomics (20)
Affinity purification coupled with mass spectrometry proteomics (13)
Gel-based experiment (13)
Mass spectrometry (12)
Data-dependent acquisition (11)
Data-independent acquisition (11)
SWATH MS (9)
NMR spectroscopy (3)
SRM/MRM (3)
Top-down proteomics (3)
Mass spectrometry assay (2)
Immunopeptidomics (2)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
NMR spectroscopy assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)
MSE (1)

Instrument Platform

Illumina NovaSeq 6000 (17)
NextSeq 500 (4)
Q Exactive (4)
Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina MiSeq (3)
Axon- GenePix4000B (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 3000 (2)
Orbitrap Fusion (2)
Q Exactive HF-X (2)
MS Imaging - (2)
I.DOT (Dispendix), C.WASH (CYTENA), Qubit Fluorometer (Thermo Fisher Scientific), Agilent TapeStation 4200 (1)
BD FACSDiscover S8 (1)
Scanpy (hash 98de5d1a) (1)
Chromium Next GEM Single Cell 5' Reagent Kits (10x Genomics) (1)
10xGenomics Chromium 3'v3 (1)
CryoStor® CS10 Freezing Medium (Cat. No. 100-1061; StemCell Technologies) (1)
Nanodrop 2000c spectrophotometer (1)
ScanArray 4000 [PerkinElmer] (1)
Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
MinION (1)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Elite (1)
Q Exactive HF (1)
Q Exactive Plus (1)

Publication Date

2014 (31)
2025 (30)
2010 (30)
2021 (26)
2023 (23)
2022 (22)
2012 (21)
2011 (21)
2008 (21)
2026 (19)
2013 (19)
2015 (17)
2024 (16)
2016 (11)
2009 (11)
2020 (11)
2019 (10)
2017 (8)
2018 (5)
2007 (5)
2005 (3)
2006 (2)
2004 (1)

CHEBI ID

CHEBI:16708 (7)
CHEBI:17568 (7)
CHEBI:15428 (6)
CHEBI:15741 (6)
CHEBI:15891 (6)
CHEBI:16919 (6)
CHEBI:17368 (6)
CHEBI:17596 (6)
CHEBI:17895 (6)
CHEBI:18012 (6)
CHEBI:18019 (6)
CHEBI:15940 (5)
CHEBI:15971 (5)
CHEBI:16015 (5)
CHEBI:16027 (5)
CHEBI:16040 (5)
CHEBI:16135 (5)
CHEBI:16414 (5)
CHEBI:16467 (5)
CHEBI:16643 (5)
CHEBI:16704 (5)
CHEBI:16737 (5)
CHEBI:16856 (5)
CHEBI:16865 (5)
CHEBI:16977 (5)
CHEBI:17295 (5)
CHEBI:17790 (5)
CHEBI:17822 (5)
CHEBI:18295 (5)
CHEBI:20067 (5)

Metabolite Name

Xanthine (4)
Adenine (3)
Alanine (3)
Glutathione (3)
Hypoxanthine (3)
Inosine (3)
Leucine (3)
Tryptophan (3)
Uracil (3)
2'-deoxycytidine (2)
2-Hydroxybutyrate (2)
2-Hydroxyisovalerate (2)
3-Hydroxybutyrate (2)
3-Hydroxybutyric acid (2)
3-Hydroxyisobutyrate (2)
3-Hydroxyisovalerate (2)
4-Aminobutyrate (2)
4-Hydroxyphenylpyruvic acid (2)
ADP (2)
AMP (2)
ATP (2)
AZELAIC ACID (2)
Acetate (2)
Acetoacetate (2)
Acetone (2)
Anserine (2)
Arachidonic acid (2)
Ascorbate (2)
Aspartate (2)
Behenic acid (2)

First Public Date

2014 (2)
2016 (1)
2013 (1)

Study type

Transcription profiling by array (141)
RNA-seq of coding RNA (30)
ChIP-chip by tiling array (12)
ChIP-seq (8)
Unknown experiment type (5)
Other (5)
RNA-seq of coding RNA from single cells (4)
RNA-seq of total RNA (3)
RNA-seq of non coding RNA (3)
Comparative genomic hybridization by array (2)
MeDIP-seq (1)
Animal - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Genotyping by array (1)
MicroRNA profiling by array (1)
DNA-seq (1)
CUT&RUN (1)

Release Date

2021 (267)
2022 (242)
2023 (222)
2025 (200)
2024 (185)
2020 (176)
2018 (159)
2019 (155)
2015 (136)
2016 (126)
2017 (115)
2014 (115)
2013 (92)
2012 (91)
2010 (80)
2011 (79)
2008 (52)
2009 (44)
2026 (38)
2007 (16)
2006 (14)
2004 (9)
2005 (8)
2001 (8)
2002 (3)
2003 (2)
2000 (2)
1999 (2)
1997 (1)

Lab affiliation

1) Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland 2) Faculty of Science, University of Zurich, Zurich, Switzerland (4)
Molecular Genetics, RPTU Kaiserslautern (3)
CECAD Research Center, University of Cologne, Cologne; Germany (2)
Department of Cancer Research and Molecular Medicine Department of Language and Literature Erling Skjalgssons g 1, aboratoriesenteret * * Laboratoriesenter Norwegian University of Science and Technology Trondheim 7030 Norway (2)
German Cancer Reseach Center (DKFZ) (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
1. Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Germany 2. Cluster of Excellence iFIT (EXC2180) “Image-Guided and Functionally Instructed Tumor Therapies”, University of Tübingen, Germany 3. Clinical Collaboration Unit Translational Immunology, Department of Internal Medicine, University Hospital Tübingen, Germany 4. German Cancer Consortium (DKTK) and German Cancer Research Center (DKFZ), partner site Tübingen, Germany (1)
1. Institute of Clinical Chemistry, University Medical Center Goettingen, Goettingen, Germany; 2. Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Goettingen, Germany (1)
Australian Institute of Tropical Health and Medicine, James Cook University, Cairns, Australia (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Stasse 4 85354 Freising (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University Munich, Gregor-Mendel-Straße 4, 85354, Freising, Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany (1)
Ben May Department of Cancer Research, University of Chicago (1)
Ben May department of cancer research, The university of Chicago (1)
Bioanalytical Mass Spectrometry Group, Max-Planck-Institute for Biophysical Chemistry Department of Clinical Chemistry, University Medical Center Goettingen (1)
Biomedical Center Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried (1)
Biomedical Center Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried Phone: (089) 2180 71602 (1)
CPRO, Helmholtz-Zentrum für Infektionsforschung, Braunschweig, Germany (1)
CSO, Bioaster, France (1)
Carolin Daniel Helmholtz Zentrum München German Research Center for Environmental Health Institute of Diabetes Research Young Investigator Group Immune Tolerance in Diabetes Ingolstädter Landstrasse 1 85764 München-Neuherberg (1)
Centro Nacional de Microbiologia (Instituto de Salud Carlos III) (1)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (1)
Charité – Universitätsmedizin Berlin, Institut für Translationale Physiologie (CCM), Charitéplatz 1, D-10117 Berlin, Germany (1)
Chromatin Biology Laboratory, Josep Carreras Leukaemia Research Institute (IJC), Ctra de Can Ruti, Camí de les Escoles s/n, 08916, Badalona, Barcelona, Spain (1)
Cornell University (1)
D-BSSE, ETH Zürich, Switzerland (1)
DZNE Munich Neuroproteomics Feodor-Lynen-Str. 17 81377 München Germany (1)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (1)
Department of Biological Chemistry, University of California Los Angeles (1)
Department of Medical Genetics, University of British Columbia, Vancouver, Canada (1)

Tags

xref:PubMed:23798402 (1)
xref:PubMed:16478798 (1)
xref:PubMed:26804913 (1)
xref:PubMed:25313409 (1)

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G protein-coupled receptors: in silico drug discovery in 3D.

Not available

S-EPMC509175 | biostudies-literature

Proteomic characterization of the molecular signature of congenital myopathies

Congenital myopathies (CMs) are progressive diseases that constitute a diverse group of hereditary neuromuscular disorders that have been studied due to their diagnostic and therapeutic complexity. Due to the great clinical and molecular heterogeneity of CMs, this set of diseases constantly challeng...

ORGANISM(S): Homo sapiens (Human)

2025-05-06 | PXD050694 | Pride

Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back.

Not available

S-EPMC7736831 | biostudies-literature

Disentangling bias between G_q, GRK2, and arrestin3 recruitment to the M₃ muscarinic acetylcholine receptor.

Not available

S-EPMC8635974 | biostudies-literature

Envelope-Specific Adaptive Immunity following Transplantation of Hematopoietic Stem Cells Modified with VSV-G Lentivirus.

Not available

S-EPMC7683283 | biostudies-literature

Findings from the Longitudinal CINRG Becker Natural History Study.

Not available

S-EPMC10789327 | biostudies-literature

Evaluation of the socially evaluated cold-pressor group test (SECPT-G) in the general population.

Not available

S-EPMC6697040 | biostudies-literature

CDK4 inhibition restores G(1)-S arrest in MYCN-amplified neuroblastoma cells in the context of doxorubicin-induced DNA damage.

Not available

S-EPMC3646865 | biostudies-literature

RNA-seq from myogenic satellite cells from a translational porcine model for Duchenne muscular dystrophy, heterozygous female carriers, and their healthy wild-type counterpart

Satellite cells (SCs), the stem cell population of skeletal muscle, are crucial for growth and regeneration, and their dysfunction is increasingly recognized as a contributing factor to Duchenne muscular dystrophy (DMD). DMD is a severe, X-linked disorder caused by DMD gene mutations, leading to lo...

ORGANISM(S): Sus scrofa

2025-12-11 | E-MTAB-16179 | biostudies-arrayexpress

Dilated cardiomyopathy as the initial presentation of Becker muscular dystrophy: a systematic review of published cases.

Not available

S-EPMC9097097 | biostudies-literature

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2799 Results

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