Benzoate - OmicsDI

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CHEBI ID

CHEBI:30746 (80)
CHEBI:15428 (77)
CHEBI:16708 (74)
CHEBI:15891 (74)
CHEBI:17368 (74)
CHEBI:17750 (71)
CHEBI:16704 (71)
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CHEBI:16737 (66)
CHEBI:17268 (65)
CHEBI:16919 (65)
CHEBI:16750 (64)
CHEBI:17754 (63)
CHEBI:16610 (63)
CHEBI:48430 (62)
CHEBI:16344 (62)
CHEBI:17533 (62)
CHEBI:25017 (62)
CHEBI:17724 (61)
CHEBI:16449 (61)

Metabolite Name

Benzoate (61)
Choline (57)
Citrate (56)
Uridine (55)
Histidine (55)
Leucine (55)
Glycine (55)
Deoxycarnitine (54)
5-oxoproline (54)
Tryptophan (54)
Taurine (54)
Inosine (54)
Citrulline (54)
Betaine (54)
Aspartate (54)
Arginine (54)
Allantoin (54)
Phenylalanine (54)
Tyrosine (54)
Alanine (54)
Valine (54)
Isoleucine (54)
Threonate (53)
Glycerate (53)
3-hydroxy-3-methylglutarate (53)
Serine (53)
Pseudouridine (53)
Proline (53)
Lysine (53)
Hypoxanthine (53)

IsPrivate

False (3)

Model Flag

Non Kinetic (3)

First Public Date

2014 (30)
2024 (21)
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2018 (9)
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2021 (8)
2016 (8)
2013 (8)
2015 (7)
2022 (6)
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2017 (4)
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Classification

bacteria (4)

Modelling Approach

Constraint-based model (3)

Study type

Transcription profiling by array (177)
RNA-seq of coding RNA (34)
ChIP-seq (11)
Comparative genomic hybridization by array (9)
Unknown experiment type (7)
ChIP-chip by tiling array (4)
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Release Date

2010 (204)
2011 (171)
2009 (156)
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2008 (115)
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2020 (108)
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2005 (13)
2003 (10)
2000 (9)
2001 (8)
2002 (7)
2004 (6)
1999 (5)
1998 (5)
1997 (1)

Lab affiliation

Chinese Academy of Sciences Shanghai Institute of Materia Medica (1)
Department of Chemistry and Biochemistry, University of California, Los Angeles, CA,USA David Geffen School of Medicine, Department of Biological Chemistry, University of California, Los Angeles, CA, USA UCLA-DOE Institute, University of California, Los Angeles, CA, USA UCLA Molecular Biology Institute, University of California, Los Angeles, CA, USA (1)
Division of Systems Biology, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR 72079, USA (1)
Estonia University of Tartu Faculty of Science and Technology Institute of Molecular and Cell Biology Chair of Genetics (1)
Helmholtz Centre for Environmental Research - UFZ, Environmental Biotechnology and Technische Universität Berlin, Geobiotechnology (1)
Laboratório Unidade Proteômica, Centro de Tecnologia, Universidade Federal do Rio de Janeiro, Avenida Athos da Silveira Ramos, 149, Rio de Janeiro, Rio de Janeiro, CEP 21941-611, Brazil (1)
Louisiana State University Mass Spectrometry Facility (1)
Program in Cell Biology Hospital For Sick Children, Toronto, SPARC BioCentre Hospital For Sick Children, Toronto, 8Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (1)
The University of Chicago (1)
USDA-ARS (1)

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Distinct lipid signatures are identified in the plasma of rats with chronic inflammation induced by estradiol benzoate and sex hormones

INTRODUCTION: Prostatitis is likely to occur in younger or middle-aged men, while prostate cancer is likely to occur in older men. Although amino acids and lipids as biomarkers of prostate cancer have been examined using prostate cancer cell lines/tissues, no previous studies hav...

2020-11-04 | MTBLS2028 | MetaboLights

Benzoate induced transcriptomic response in Bacillus subtilis

Bacillus subtilis strain AG174 was grown in the presence and absence of benzoate (30 mM). Benzoate was used in order to equalize the external and internal pH. The cultures were grown at external pH 7.0, and the addition of benzoate did not change the external pH. Microarray analysis was performed o...

ORGANISM(S): Bacillus subtilis

2010-05-19 | E-GEOD-12263 | biostudies-arrayexpress

Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Benzene vs. Benzoate)

Anaerobic benzene oxidation coupled to the reduction of Fe(III) was studied in Ferroglobus placidus in order to learn more about how such a stable molecule could be metabolized under strict anaerobic conditions. F. placidus conserved energy to support growth at 85°C in a medium with benzene provide...

ORGANISM(S): Ferroglobus placidus DSM 10642

2011-07-19 | E-GEOD-30801 | biostudies-arrayexpress

Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Phenol vs. Benzoate)

ORGANISM(S): Ferroglobus placidus DSM 10642

2011-07-19 | E-GEOD-28549 | biostudies-arrayexpress

Institute of Aquaculture Lepeophtheirus salmonis analysis of gene expression induced by in vitro exposure to emamectin benzoate

Caligid copepods, also called sea lice, are common ectoparasites of wild and farmed marine fish. The salmon louse Lepeophtheirus salmonis (KrM-xyer, 1837) has emerged as a serious problem for salmon farming in the Northern hemisphere. The annual cost of sea lice to the global salmon mariculture indu...

ORGANISM(S): Lepeophtheirus salmonis

2013-11-06 | E-MTAB-1478 | biostudies-arrayexpress

Expression analysis of benzoate degradation in the hyperthermophilic archaeon Ferroglobus placidus

Insight into the mechanisms for the anaerobic metabolism of aromatic compounds by the hyperthermophilic archaeon Ferroglobus placidus is expected to improve understanding of the degradation of aromatics in hot (> 80 °C) environments and to identify enzymes that might have biotechnological applicatio...

ORGANISM(S): Ferroglobus placidus DSM 10642

2011-01-05 | E-GEOD-26421 | biostudies-arrayexpress

Effect of biphenyl, ethylbenzene, and benzoate on Rhodococcus sp. RHA1

This SuperSeries is composed of the following subset Series: GSE5268: Effects of biphenyl on Rhodococcus sp. RHA1 GSE5269: Effects of ethylbenzene on Rhodococcus sp. RHA1 GSE5270: Effects of benzoate on Rhodococcus sp. RHA1 Refer to individual Series

ORGANISM(S): Rhodococcus sp. RHA1

2010-07-01 | E-GEOD-5280 | biostudies-arrayexpress

DIET benzoate degradation

DIET benzoate degradation Raw sequence reads

PRJNA475220 | ENA

Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus

This SuperSeries is composed of the following subset Series: GSE28549: Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Phenol vs. Benzoate) GSE30798: Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Benzene vs. Acetate) GSE...

ORGANISM(S): Ferroglobus placidus DSM 10642

2011-07-19 | E-GEOD-30796 | biostudies-arrayexpress

Expression analysis of benzoate and phenol degradation in the hyperthermophilic archaeon Ferroglobus placidus

This SuperSeries is composed of the following subset Series: GSE26421: Expression analysis of benzoate degradation in the hyperthermophilic archaeon Ferroglobus placidus GSE26423: Expression analysis of phenol degradation in the hyperthermophilic archaeon Ferroglobus placidus Refer to individual Ser...

ORGANISM(S): Ferroglobus placidus DSM 10642

2011-01-05 | E-GEOD-26424 | biostudies-arrayexpress

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