Berger R R - OmicsDI

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Unknown (2547)
Transcriptomics (107)
Proteomics (75)
Genomics (27)
Metabolomics (16)

Organisms

Chlamydomonas reinhardtii (67)
Pseudomonas canadensis (67)
Human alphaherpesvirus 1 strain 17 (67)
Marchantia polymorpha subsp. ruderalis (67)
Methylocystis sp. (67)
Exiguobacterium sp. SH31 (67)
Porites pukoensis (67)
Porphyromonas gingivalis W83 (67)
Bothrops insularis (67)
Homo sapiens (64)
Mus musculus (20)
Saccharomyces cerevisiae (9)
Arabidopsis thaliana (7)
Camponotus floridanus (5)
Harpegnathos saltator (3)
Bifidobacterium longum (3)
Rattus norvegicus (3)
Staphylococcus aureus (2)
Drosophila melanogaster (2)
Phaeomoniella chlamydospora (1)
Lactobacillus johnsonii (1)
Eucalyptus grandis (1)
Vigna unguiculata (1)
Arachis hypogaea (1)
Aspergillus nidulans (1)
Daphnia magna (1)
synthetic construct (1)
Vitis vinifera (1)
Bos taurus (1)
Candida albicans (1)

Organisms

Homo sapiens (2)

Repository

biostudies-arrayexpress (123)
pride (67)
MetaboLights (16)
EGA (8)
MassIVE (5)
ENA (5)
geo (1)
PanoramaPublic (1)

Tissue

Cell culture (15)
Lung (9)
Skin (4)
Bronchial epithelial cell (3)
Placenta (3)
Urine (3)
Epithelial cell (3)
Bronchial smooth muscle cell (2)
Pancreas (2)
Cerebrospinal fluid (2)
Heart (2)
Brain (2)
Blood plasma (2)
Kidney (2)
Liver (2)
T cell (2)
Glomerular mesangial cell (1)
CT-26 cell (1)
Uvea (1)
Blood-lymph (1)
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Stromal cell (1)
Neuroblast (1)
Fruit (1)
Lymphoblast (1)
Pericarp (1)
Bronchus smooth muscle (1)
Schwann cell (1)
Intestine (1)
Skin epidermis (1)

Disease

Melanoma (3)
Colon cancer (3)
Uveal melanoma (2)
Asthma (2)
Lung carcinoma (2)
Lymphoma (2)
Neuroblastoma (2)
Brain cancer (2)
Non tumoral reference sample (1)
Diffuse large B-cell lymphoma (1)
Oligodendroglioma (1)
Liposarcoma (1)
E. lata infected plant without symptoms (1)
Synovial sarcoma (1)
Embryonal rhabdomyosarcoma (1)
Renal Wilms' tumor (1)
Peripheral primitive neuroectodermal tumor (1)
Fibrosarcoma (1)
Ovarian cyst (1)
Head and neck cancer (1)
Malignant mesothelioma (1)
Lung small cell carcinoma (1)
Chronic bronchitis (1)
Stomach cancer (1)
Childhood extraosseous osteosarcoma (1)
Retinoblastoma (1)
Chronic obstructive pulmonary disease (1)
Hepatocellular carcinoma (1)
Prostate adenocarcinoma (1)
Cholangiocarcinoma (1)

Technology Type

Mass Spectrometry (67)
Shotgun proteomics (44)
Bottom-up proteomics (15)
Data-dependent acquisition (14)
Mass spectrometry (11)
Affinity purification coupled with mass spectrometry proteomics (6)
NMR spectroscopy (5)
Data-independent acquisition (2)
Top-down proteomics (2)
Mass spectrometry assay (1)
MSE (1)
SRM/MRM (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Nuclear Magnetic Resonance (NMR) - (5)
Liquid Chromatography MS - positive - reverse phase (5)
Liquid Chromatography MS - negative - reverse phase (4)
Illumina HiSeq 2500 (2)
Q Exactive HF-X (2)
Q Exactive (2)
Liquid Chromatography MS - alternating - reverse phase (2)
GenePix 4000A [Axon Instruments] (1)
Illumina HiSeq 2000 (1)
Q Exactive HF (1)
Q Exactive Plus (1)
Xevo TQ MS (1)
6490 Triple Quadrupole LC/MS (Agilent) (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) (1)
Acquity UPLC - 6530 QToF (1)
6540 Q-TOF LC/MS (Agilent) (1)
MS Imaging - (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2010 (25)
2014 (16)
2013 (15)
2024 (15)
2021 (14)
2015 (14)
2012 (14)
2023 (14)
2011 (11)
2025 (11)
2008 (9)
2020 (9)
2022 (8)
2016 (7)
2018 (6)
2009 (6)
2026 (6)
2019 (5)
2017 (5)
2007 (3)

CHEBI ID

CHEBI:15428 (9)
CHEBI:15354 (9)
CHEBI:32816 (8)
CHEBI:16856 (7)
CHEBI:15891 (7)
CHEBI:30769 (7)
CHEBI:15741 (6)
CHEBI:16335 (6)
CHEBI:17053 (6)
CHEBI:16015 (6)
CHEBI:18012 (6)
CHEBI:16737 (6)
CHEBI:16919 (6)
CHEBI:16040 (5)
CHEBI:18295 (5)
CHEBI:16708 (5)
CHEBI:16977 (5)
CHEBI:16610 (5)
CHEBI:28044 (5)
CHEBI:17115 (5)
CHEBI:18050 (5)
CHEBI:16704 (5)
CHEBI:16857 (5)
CHEBI:30915 (5)
CHEBI:16414 (5)
CHEBI:27897 (5)
CHEBI:17191 (5)
CHEBI:15724 (5)
CHEBI:15603 (5)
CHEBI:17895 (5)

Metabolite Name

Glycine (5)
Ethanol (4)
L-Alanine (4)
Acetone (4)
L-Threonine (4)
1-Methylhistidine (4)
L-Glutamic acid (4)
Taurine (4)
Histamine (4)
L-Glutamine (4)
Creatinine (4)
L-Valine (4)
L-Isoleucine (4)
L-Tyrosine (4)
L-Phenylalanine (4)
L-Lactic acid (3)
Beta-Alanine (3)
Pyruvic acid (3)
D-Glucose (3)
Formic acid (3)
Adenosine triphosphate (3)
Myoinositol (3)
Isopropyl alcohol (3)
Phenylacetic acid (3)
L-Aspartic acid (3)
Acetic acid (3)
Glutathione (3)
NADP (3)
NAD (3)
Dihydrothymine (3)

First Public Date

2026 (2)
2022 (1)
2017 (1)
2015 (1)

Study type

Transcription profiling by array (65)
RNA-seq of coding RNA (16)
ChIP-seq (11)
Unknown experiment type (5)
Comparative genomic hybridization by array (5)
RNA-seq of non coding RNA (4)
ChIP-chip by tiling array (3)
Other (3)
Methylation profiling by high throughput sequencing (3)
ChIP-chip by array (2)
Proteomic profiling by array (2)
Transcription profiling by array;comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)

Release Date

2022 (304)
2025 (272)
2023 (267)
2021 (263)
2024 (229)
2020 (209)
2019 (167)
2018 (167)
2017 (127)
2016 (120)
2015 (108)
2014 (88)
2012 (65)
2010 (59)
2013 (55)
2011 (52)
2026 (30)
2008 (28)
2009 (26)
2007 (9)
2005 (6)
1998 (4)
2006 (3)
2003 (3)
1999 (3)
2004 (2)
2002 (1)
2001 (1)
2000 (1)
1997 (1)

Lab affiliation

Department of Molecular Cell Biology, Weizmann institute of Science, Israel (5)
Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg, Sweden (4)
Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria. (4)
Proteomics Core Facility, University of Gothenburg, Sweden (3)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (3)
Univ. Bordeaux, INSERM, CRCTB, U 1045, F-33000 Bordeaux, France (3)
Centre de recherche Cardio-Thoracique de Bordeaux, INSERM U1045, PTIB, Hôpital Xavier Arnozan, Avenue du Haut Lévêque, 33604 Pessac Cedex (2)
U1045, CRCTB, Bâtiment PTIB, Avenue de Haut Lévèque, 33000 Bordeaux, France (2)
Department of Chemical and Physical Sciences, University of Toronto Mississauga, Mississauga, Canada (2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (2)
Department of Human Molecular Genetics and Biochemistry, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel (1)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 United States of America (1)
Boston Childrens Hospital Steen Lab Department of Pathology Boston, MA, USA (1)
Gottfried Schatz Research Center for Cell Signaling, Metabolism & Aging, Division of Cell Biology, Histology and Embryology, Medical University of Graz, 8010 Graz, Austria (1)
OmicScouts GmbH Lise-Meitner-Str. 30 D-85354 Freising Germany (1)
Institut de Biologie Intégrative et des Systèmes, Département de Biologie, Université Laval, Québec, Canada (1)
Bioanalytical Mass Spectrometry, Max Planck Institute for Multidisciplinary Sciences, Germany Bioanalytics, University Medical Center Goettingen, Germnay (1)
IPSIM, INRAE, Montpellier, France (1)
Obesity and Metabolism Laboratory, The Institute for Drug Research, School of Pharmacy, Faculty of Medicine, The Hebrew University of Jerusalem, Israel. (1)
Head of Center for Microbial Communities Department of Chemistry and Bioscience Aalborg University Fredrik Bajers Vej 7H 9220 Aalborg Denmark (1)
University of Bristol, School of Biochemistry (1)
Molecular Systems Biology (MoSys), Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria (1)
Paul Scherrer Institute Center for Radiopharmaceutical Sciences Forschungsstrasse 111 5232 Villigen PSI Switzerland (1)
Sydney Institute of Agriculture, University of Sydney, Sydney, Australia (1)
Department of Clinical Science, Haukeland university hospital, Norway (1)
Department of Obstetrics and Gynecology, Medical University of Graz, Austria (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom. (1)
Experimental Neurology, University Hospital, Frankfurt am Main, Germany (1)
BPMP, CNRS, INRA, Montpellier SupAgro, Univ Montpellier, Montpellier, France (1)
University of Vienna (1)

Tags

xref:PubMed:28193624 (1)
xref:PubMed:23457546 (1)

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SSHscreen analysis of cowpea drought stress SSH libraries (F&R) to calculate Enrichment ratio 2 and 3 values

Screening cDNA clones from SSH library by hybridization with cDNA used to construct the library. Treated samples were drought-stressed cowpea plants, and control samples were cowpea plants subjected to a standard watering regime. cDNA clones from forward and reverse libraries are spotted on the same...

ORGANISM(S): Vigna unguiculata

2010-05-05 | E-GEOD-20273 | biostudies-arrayexpress

A polymorphism within the R-spondin 2 gene predicts outcome in metastatic colorectal cancer patients treated with FOLFIRI/bevacizumab: data from FIRE-3 and TRIBE trials.

Not available

S-EPMC7513926 | biostudies-literature

Transcription profiling of Vitis vinifera cv. Cabernet-Sauvignon leaves obtained from plants grown in different enviroments and infected with vascular ascomycete fungus Eutypa lata.

Eutypa dieback is a vascular disease that may severely affect vineyards throughout the world. In the present work, microarrays analysis were made in order (i) to improve our knowledge of grapevine (Vitis vinifera cv. Cabernet-Sauvignon) responses to Eutypa lata, the causal agent of Eutypa dieback an...

ORGANISM(S): Vitis vinifera

2010-03-01 | E-MEXP-2337 | biostudies-arrayexpress

Crystallization of lysozyme with (R)-, (S)- and (RS)-2-methyl-2,4-pentanediol.

Not available

S-EPMC4356360 | biostudies-literature

JWST detection of a supernova associated with GRB 221009A without an r-process signature.

Not available

S-EPMC11189819 | biostudies-literature

R-spondin 3 promotes stem cell recovery and epithelial regeneration in the colon.

Not available

S-EPMC6761174 | biostudies-literature

Gentamicin Population Pharmacokinetics in Pediatric Patients-A Prospective Study with Data Analysis Using the saemix Package in R.

Not available

S-EPMC8541459 | biostudies-literature

Transcription profiling of human patients with diffuse large B-cell lymphoma treated with CHOP or Ritxumab-CHOP

A "Cartes d'Identite des Tumeurs" (CIT) project from the french Ligue Nationale Contre le Cancer (http://cit.ligue-cancer.net). 53 samples hybridized on Affymetrix HG-U133A GeneChips arrays, for 53 patients with diffuse large B-cell lymphoma (DLBCL); patients are treated with CHOP (cyclophosphamide,...

ORGANISM(S): Homo sapiens

2008-06-01 | E-TABM-346 | biostudies-arrayexpress

Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.

Not available

S-EPMC152626 | biostudies-literature

R-spondin/YAP axis promotes gastric oxyntic gland regeneration and Helicobacter pylori-associated metaplasia in mice.

Not available

S-EPMC9621134 | biostudies-literature