Beta vulgaris - OmicsDI

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Genomics (729)
Unknown (499)
Transcriptomics (125)
Proteomics (31)
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Genomic (1)
Methylation profiling (1)

Organisms

Homo sapiens (26)
Beta vulgaris (18)
Hydra vulgaris (9)
Arabidopsis thaliana (8)
Beta vulgaris subsp. vulgaris (6)
Tetranychus urticae (5)
Prunus persica (5)
Phaseolus vulgaris (5)
Gasterosteus aculeatus (4)
Daphnia magna (4)
Drosophila melanogaster (3)
Mus musculus (3)
Helicoverpa armigera (2)
Heterodera schachtii (2)
Glycine max (2)
Ricinus communis (2)
Paraburkholderia phymatum STM815 (2)
Octopus vulgaris (1)
Trametes versicolor (1)
Talinum fruticosum (1)
Prunus armeniaca (1)
Nicotiana attenuata (1)
Euphorbia esula (1)
Aspergillus niger (1)
Oryza sativa (1)
Ovis aries (1)
Gallus gallus (1)
Phaseolus lunatus (1)
Nepenthes rafflesiana (1)
Panicum hallii (1)

Organisms

Beta vulgaris subsp. vulgaris (532)
Beta vulgaris (43)
Beta vulgaris subsp. maritima (12)
Hydra vulgaris (7)
Homo sapiens (5)
Paraburkholderia phymatum STM815 (2)
Beta vulgaris subsp. adanensis (1)
Caryophyllales (1)
Amaranthaceae (1)
Beta vulgaris subsp. cicla (1)
Pseudomonas thivervalensis (1)
Beta macrorhiza (1)
Rhizobium sp. (1)
endophyte metagenome (1)
root metagenome (1)
marine metagenome (1)
unidentified (1)
Mus musculus (1)

Repository

ENA (721)
biostudies-arrayexpress (103)
geo (31)
pride (19)
MassIVE (9)
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iProX (4)
EGA (2)
dbGaP (1)
GNPS (1)
MetabolomicsWorkbench (1)

Tissue

Leaf (5)
Root (4)
Plant (1)
Connective tissue (1)
Extracellular vesicle (1)
Adipose tissue (1)
Saliva (1)
Muscle (1)
Feces (1)
Plant cell (1)
Whole body (1)

Disease

Psoriasis vulgaris (1)

Technology Type

Mass Spectrometry (20)
Shotgun proteomics (8)
Bottom-up proteomics (6)
Mass spectrometry (4)
Gel-based experiment (4)
Data-dependent acquisition (4)
Mass spectrometry assay (2)
ESI (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (4)
Illumina HiSeq 2000 (4)
Illumina NovaSeq 6000 (3)
LTQ Orbitrap Elite (3)
Maxwell 16 Instrument (2)
NextSeq 500 (2)
QE Exactive (2)
LTQ Orbitrap (2)
Q Exactive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Maxwell® AS2000 instrument (1)
Illumina Hiseq 2500 (1)
Agilent High resolution C scanner (1)
Axon 4000B (1)
TruSeq® Nano (1)
BGISEQ-500 (1)
Illumina HiSeq 1500 (1)
Xevo G2-XS QTof (1)
Clarus SQ 8S Mass Spectrometer (1)
LTQ FT-Ultra (Thermo Scientific) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2011 (18)
2010 (16)
2012 (14)
2023 (12)
2014 (12)
2008 (11)
2025 (10)
2024 (9)
2022 (8)
2018 (8)
2021 (7)
2026 (6)
2020 (6)
2019 (6)
2016 (6)
2009 (6)
2007 (5)
2017 (4)
2015 (4)
2013 (3)
2006 (1)

CHEBI ID

CHEBI:27897 (3)
CHEBI:26493 (2)
CHEBI:26984 (2)
CHEBI:18186 (2)
CHEBI:28044 (2)
CHEBI:29016 (2)
CHEBI:16811 (2)
CHEBI:16634 (2)
CHEBI:17140 (2)
CHEBI:16885 (2)
CHEBI:17620 (2)
CHEBI:16682 (2)
CHEBI:16742 (2)
CHEBI:17505 (2)
CHEBI:17310 (2)
CHEBI:17172 (2)
CHEBI:17992 (2)
CHEBI:16020 (2)
CHEBI:16335 (2)
CHEBI:16750 (2)
CHEBI:16235 (2)
CHEBI:17750 (2)
CHEBI:16695 (2)
CHEBI:17015 (2)
CHEBI:18257 (2)
CHEBI:18237 (2)
CHEBI:17596 (2)
CHEBI:17268 (2)
CHEBI:12937 (1)
CHEBI:191640 (1)

Metabolite Name

PC(16:1(9Z)/LTE4) (2)
N1-(2-Hydroxyethyl)flurazepam (2)
17alpha-Estradiol (2)
Floctafenic acid (2)
1-[(2R,3S,5R)-3,4-Dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione (2)
2'-O-Methylcytidine (2)
Aminofructose 6-phosphate (2)
3-Nitrotoluene (2)
Glycylleucine (2)
Dioctyl phthalate (2)
Prostaglandin E1 (2)
Sucrose (2)
Stearidonic acid (2)
Methionine (2)
D-Galactose (2)
D-Fructose (2)
Coniferyl alcohol (2)
Traumatin (2)
9(S)-HOTrE (2)
L-Norleucine (2)
1-Methyladenosine (2)
Raffinose (2)
L-Tryptophan (2)
Hexadecanedioic acid (2)
Palatinose (2)
(S)-9-Hydroxy-10-undecenoic acid (2)
Stachyose (2)
Trehalose (2)
Undeca-3,5,7-trienoic acid (1)
Undeca-2,5,8-trienoic acid (1)

First Public Date

2023 (410)
2025 (109)
2024 (84)
2026 (28)
2013 (13)
2021 (12)
2017 (12)
2014 (12)
2019 (9)
2022 (8)
2020 (8)
2018 (8)
2016 (4)
2015 (4)

Study type

Transcription profiling by array (66)
RNA-seq of coding RNA (22)
Unknown experiment type (6)
RNA-seq of non coding RNA (2)
Plant - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Other (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (64)
2025 (58)
2023 (57)
2021 (56)
2024 (49)
2020 (34)
2010 (26)
2019 (25)
2011 (24)
2016 (23)
2014 (23)
2017 (22)
2008 (21)
2018 (20)
2015 (19)
2012 (19)
2013 (17)
2009 (9)
2007 (9)
2026 (8)
2002 (4)
2000 (4)
2006 (3)
2003 (2)
1999 (2)
2005 (1)
2004 (1)
2001 (1)
1998 (1)

Lab affiliation

Facility Manager, Proteomics Mass Spectrometry, Central Science Laboratory, University of Tasmania (2)
London Research and Development Centre Agriculture and Agri-Food Canada (1)
Proteomic Platform of Institut de Microbiologie de la Mediterranee CNRS FR 3479 Marseille Proteomique (1)
The People's Republic of China, College of Modern Agriculture and Ecological Environment, Heilongjiang University-National Sugar Improvement Center (1)
Proteomics and Metabolomics Facility (1)
Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany (1)
Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin 150500, China (1)
Department of Biotechnology and Biochemistry, Bioenergetics and biomembranes laboratory, Centro de Investigación y Estudios Avanzados del IPN - Unidad Irapuato, México (1)
Investigador Ramon y Cajal, grupo Bionanosurf, Instituto de nanociencia y materiales de ARagón (Zaragoza, España) (1)
Proteomics, Metabolomics and Mass Spectrometry Laboratory,ISPAAM, National Research Council, P.le E. Fermi 1, 80055 Portici, Italy (1)
Molecular Evolution and Genomics, Centre for Organismal Studies, Heidelberg University, D69120 Heidelberg, Germany (1)
Devision of Molecular Systems Biology, Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria (1)
Section for Geobiology, Globe Institute, University of Copenhagen, Copenhagen, Denmark. McDonald Institute for Archaeological Research, University of Cambridge, UK. (1)
Department of Crop Protection Faculty of Bioscience Engineering Ghent University Coupure Links 653, 9000 Ghent, Belgium (1)
Instituto de Acuicultura Torre de la Sal (IATS-CSIC), 12595 Ribera de Cabanes, Castellón, Spain. (1)
Instituto de Acuicultura Torre de la Sal (IATS-CSIC), 12595 Ribera de Cabanes, Castellón, Spain (1)
Sugar Beet Physiological Research Institute, Inner Mongolia Agricultural University, Hohhot, China (1)
North Carolina State University (1)

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Cell wide response to air exposure in Desulfovibrio vulgaris Hildenborough

We investigated the effects of air exposure on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: stress response, time course Comparison of cells treated with air to untreated cells at 0,10,30,120,240 min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2007-08-08 | E-GEOD-8196 | biostudies-arrayexpress

Cell wide response to low oxygen exposure in Desulfovibrio vulgaris Hildenborough

We investigated the effects of low level oxygen on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: time course, stress response Comparison of cells treated with 1000 ppm oxygen to untreated cells at 60,120,240 min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2010-06-10 | E-GEOD-7816 | biostudies-arrayexpress

Research on the Molecular Mechanism of Fiber Formation in the Suture of Snap Bean (Phaseolus vulgaris L.) Pods

The tender pod is the primary edible part of the snap bean (Phaseolus vulgaris L.), and the level of suture fiber content is one of the key factors affecting its edible quality. To elucidate the key regulatory mechanisms and metabolic basis underlying suture fiber formation in pods, this study em...

2026-01-30 | MTBLS13805 | MetaboLights

Energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough

This SuperSeries is composed of the following subset Series: GSE8015: Pyruvate fermentation vs Lactate-Sulfate GSE8037: Hydrogen vs Lactate as electron donor in Sulfate reduction GSE8071: Pyruvate vs Lactate as electron donor in Sulfate reduction GSE8072: Thiosulfate vs Sulfate as electron acceptor ...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-04-05 | E-GEOD-8069 | biostudies-arrayexpress

Hydrogen vs Lactate as electron donor in Sulfate reduction

In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8037 | biostudies-arrayexpress

pH stress in Desulfovibrio vulgaris Hildenborough

Using data from microarray experiments, we investigated the effects of excess NaCl on D. vulgaris. Keywords: stress response, time course Comparison of cells treated with pH10 pH to untreated cells at times of 0,120,240,30,60 min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2007-08-31 | E-GEOD-8197 | biostudies-arrayexpress

Pyruvate vs Lactate as electron donor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8071 | biostudies-arrayexpress

Pyruvate fermentation vs Lactate-Sulfate

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8015 | biostudies-arrayexpress

Thiosulfate vs Sulfate as electron acceptor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8072 | biostudies-arrayexpress

Nitrate Stress in Desulfovibrio vulgaris Hildenborough

Using data from microarray experiments, we investigated the effects of excess sodium nitrate on Desulfovibrio vulgaris. Keywords: stress response, time course Comparison of cells treated with 105 mM sodium nitrate to untreated cells at times of 0, 30, 60, 120, and 240 min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2010-06-22 | E-GEOD-20079 | biostudies-arrayexpress

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