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Unknown
(567)
Genomics
(213)
Proteomics
(200)
Transcriptomics
(110)
Metabolomics
(34)
Models
(27)
Other
(7)
Organisms
Homo sapiens
(284)
Severe acute respiratory syndrome coronavirus 2
(20)
BTO:0000214
(17)
Mus musculus
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Alphavirus
(13)
Archaea
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Human betaherpesvirus 5
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cellular organisms
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gut metagenome
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BTO_0000214
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Paraprevotella clara
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Rhinolophus ferrumequinum
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Mustela putorius furo
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Oryctolagus cuniculus
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Chlorocebus aethiops aethiops
(1)
C13236
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Organisms
Homo sapiens
(5)
Betacoronavirus 1
(4)
Mus musculus
(4)
Severe acute respiratory syndrome coronavirus 2
(3)
Middle East respiratory syndrome-related coronavirus
(2)
Sarbecovirus
(1)
Human betacoronavirus 2c Jordan-N3/2012
(1)
Betacoronavirus
(1)
Hedgehog coronavirus 1
(1)
Bovine coronavirus
(1)
Repository
EGA
(150)
MassIVE
(126)
biostudies-arrayexpress
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ENA
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jPOST
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MetaboLights
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pride
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Disease
COVID-19
(6)
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Technology Type
Mass spectrometry
(25)
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(13)
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(11)
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(8)
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Illumina NovaSeq 6000
(38)
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(1)
NEBNext Ultra II RNA Library Prep Kit
(1)
NEBNext Globin and rRNA Depletion Kit
(1)
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(1)
RNA purity was determined by using NanoDrop spectrophotometer ND-2000 (Thermo Fischer Scientific) through the evaluation of the absorbance ratio A260/A280
(1)
ELITeInGenius SP RNA cartridge (ELITechGroup) via ELITeInGenius fully automated system (ELITechGroup)
(1)
10x chromium
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Chromium Controller / Agilent Bioanalyzer
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Chromium Single Cell 5' Library & Gel Bead Kit v2
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FLOQSwab (Copan)
(1)
Chromium Controller
(1)
Bioinformatics Core Facility, Centre for Molecular Medicine, CEITEC Masaryk University
(1)
Publication Date
2023
(86)
2021
(71)
2022
(70)
2020
(65)
2025
(45)
2024
(37)
2026
(18)
CHEBI ID
CHEBI:15428
(11)
CHEBI:16919
(11)
CHEBI:16737
(10)
CHEBI:27897
(10)
CHEBI:17191
(10)
CHEBI:15603
(10)
CHEBI:17895
(10)
CHEBI:17295
(10)
CHEBI:30769
(10)
CHEBI:15891
(9)
CHEBI:18050
(9)
CHEBI:17203
(9)
CHEBI:16643
(9)
CHEBI:15756
(9)
CHEBI:28044
(8)
CHEBI:16857
(8)
CHEBI:18183
(8)
CHEBI:37024
(8)
CHEBI:15971
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CHEBI:16015
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CHEBI:16414
(8)
CHEBI:18344
(8)
CHEBI:17687
(8)
CHEBI:26271
(7)
CHEBI:18186
(7)
CHEBI:16525
(7)
CHEBI:25017
(7)
CHEBI:30746
(7)
CHEBI:27266
(7)
CHEBI:18211
(7)
Metabolite Name
Creatinine
(8)
Creatine
(7)
Valine
(6)
Caffeine
(6)
L-Isoleucine
(6)
Leucine
(5)
Glycine
(5)
Ornithine
(5)
Taurine
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Arachidonic acid
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Citric acid
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Proline
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Phenylalanine
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Azelaic acid
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L-Valine
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L-Leucine
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L-Phenylalanine
(5)
Hypoxanthine
(5)
Tryptophan
(4)
Phthalic acid
(4)
Caprolactam
(4)
Propionylcarnitine
(4)
Spermine
(4)
Pyroglutamic acid
(4)
Citrulline
(4)
Kynurenic acid
(4)
L-Proline
(4)
Tyrosine
(4)
D-Glucose
(4)
Oleic acid
(4)
First Public Date
2023
(9)
2026
(7)
2021
(6)
2025
(5)
2020
(4)
2024
(3)
2022
(3)
2017
(3)
2014
(1)
2013
(1)
Classification
viruses
(14)
Study type
RNA-seq of coding RNA
(35)
RNA-seq of coding RNA from single cells
(26)
DNA-seq
(11)
RNA-seq of total RNA
(10)
Transcription profiling by array
(8)
Human - High-throughput sequencing
(4)
Human - One-color microarray
(4)
Antigen profiling
(3)
Cell line - High-throughput sequencing
(2)
Proteomic profiling by array
(2)
Genotyping by high throughput sequencing
(2)
One-color microarray
(1)
Human - Single-cell sequencing
(1)
Animal - High-throughput sequencing
(1)
Genotyping by array
(1)
MicroRNA profiling by high throughput sequencing
(1)
Spatial transcriptomics by high-throughput sequencing
(1)
Ribo-seq
(1)
Single nucleus RNA sequencing
(1)
MicroRNA profiling by array
(1)
RNA-seq of non coding RNA
(1)
Release Date
2021
(145)
2020
(122)
2022
(109)
2023
(89)
2025
(69)
2024
(57)
2018
(14)
2017
(14)
2026
(11)
2015
(11)
2014
(10)
2019
(9)
2016
(8)
2013
(7)
2012
(4)
2011
(3)
2010
(2)
Lab affiliation
1. Department of Microbiology and Immunology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. 2. Department of Epidemiology, Gillings School of Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. 3. Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
(2)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France
(2)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France
(1)
Department of Microbiology Icahn School of Medicine Mount Sinai
(1)
Department of Microbiology and Immunology, University of Iowa, Iowa City, IA
(1)
Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
(1)
Departments of Biology and Chemistry, Vanderbilt University, USA
(1)
Head of Laboratory of Neuro-Oncology, Neurology, Clinical & Cancer Proteomics
(1)
National Institute of Standards and Technology
(1)
Research Manager, TNO, Department CBRN protection, The Netherlands (lab head) (lab head)
(1)
School of Bioengineering, Dalian Polytechnic University
(1)
Tags
pathogen:virus
(14)
pathogen
(14)
covid19
(8)
xref:PubMed:37672505
(3)
xref:PubMed:34278249
(1)
xref:PubMed:38529542
(1)
xref:PubMed:35236847
(1)
xref:PubMed:33166999
(1)
xref:PubMed:41276220
(1)
xref:PubMed:42301749
(1)
xref:PubMed:41348903
(1)
xref:PubMed:39763770
(1)
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Betacoronavirus 1
Betacoronavirus Surveillance of Peromyscus leucopus
PRJNA1003876
|
ENA
Cite
Betacoronavirus 1
Betacoronavirus 1 overview
PRJNA69669
|
ENA
Cite
Middle East respiratory syndrome-related coronavirus strain:Betacoronavirus
Middle East respiratory syndrome-related coronavirus strain:Betacoronavirus Raw sequence reads
PRJNA415310
|
ENA
Cite
Human betacoronavirus 2c Jordan-N3/2012
Human betacoronavirus 2c Jordan-N3/2012 Genome sequencing
PRJNA242282
|
ENA
Cite
Betacoronavirus 1
Betacoronavirus 1 Genome sequencing and assembly
PRJNA731894
|
ENA
Cite
Betacoronavirus
Eight clones of pangolin coronavirus GX_P2V (PRJCA022500)
PRJDB30141
|
ENA
Cite
Betacoronavirus-specific alternate splicing.
Not available
S-EPMC8259905
|
biostudies-literature
Cite
Betacoronavirus-specific alternate splicing.
Not available
S-EPMC8782732
|
biostudies-literature
Cite
Novel betacoronavirus in dromedaries of the Middle East, 2013.
Not available
S-EPMC3966378
|
biostudies-literature
Cite
Genomic Feature Analysis of Betacoronavirus Provides Insights Into SARS and COVID-19 Pandemics.
Not available
S-EPMC8010690
|
biostudies-literature
Cite
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