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TranscriptomicsRibosome profiling on sections taken from a kidney tumor
Ribosome profiling on sections taken from a kidney tumor For two tumors: 2 sections of normal tissue and 4 samples of tumor tissue, for another two tumors 1 section of normal tissue and 1 section of tumor tissue
ORGANISM(S): Homo sapiens 
2016-02-17 | E-GEOD-59820 | biostudies-arrayexpress
TranscriptomicsRibosome profiling and RNA sequencing of MCF10A cells treated with torin or by serum starvation
MCF10A were either untreated, treated with torin or by starvation, to induce autophagy. RNA sequencing and ribosome profiling was performed. 1 biological replicate for each condition
ORGANISM(S): Homo sapiens 
2016-02-17 | E-GEOD-59816 | biostudies-arrayexpress
TranscriptomicsRibosome profiling of harringtonine-treated SUM1315 cells
SUM1315 were treated with harringtonine, and an untreated control sample was taken. Ribosome profiling was performed on these samples. 1 treated and 1 untreated sample
ORGANISM(S): Homo sapiens 
2016-02-17 | E-GEOD-59815 | biostudies-arrayexpress
TranscriptomicsRibosome profiling on glutamine-starved panel of luminal and basal breast cancer cell lines
Four different breast cancer cell lines were grown either under unrestricted growth conditions or in medium lacking glutamine, and ribosome profliling was performed on material extracted from these samples 1 replicate per condition
ORGANISM(S): Homo sapiens 
2016-02-17 | E-GEOD-69923 | biostudies-arrayexpress
TranscriptomicsRibosome profiling on SUM159PT cells grown in vitro or in vivo
SUM159PT cells were grown either in vitro (in culture) or in vivo (mouse), after which RPL10a tagged with GFP was used to perform extraction by immoprecipitation and subsequent ribosome profiling Two batches of in vitro grown cells, each having 2 replicates. Two batches of in vivo grown cells from t...
ORGANISM(S): Homo sapiens 
2016-02-17 | E-GEOD-74512 | biostudies-arrayexpress
TranscriptomicsASNase treatment in PC3 cells
Ribosome profiling performed on control and L-Asparaginase treated PC3 cells 2 individual batches: (i) 1 control and 1 treated sample, (ii) 1 control and 2 treated samples
ORGANISM(S): Homo sapiens 
2016-02-17 | E-GEOD-74510 | biostudies-arrayexpress
TranscriptomicsRibosome profiling on polysomes extracted via sucrose gradient and IP
Technical feasibility study to determine data quality and reproducibilty. Ribosome profiling was performed by either sucrose gradient (SG) or immunoprecipitation (IP). 1 sucrose gradient sample, 2 immunoprecipitation samples in two concentrations of beads
ORGANISM(S): Homo sapiens 
2016-02-17 | E-GEOD-74511 | biostudies-arrayexpress
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