Bgc - OmicsDI

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synthetic construct (1)
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Organisms

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unidentified (3)
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Disease

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Mass Spectrometry (27)
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Publication Date

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UNIPROT ID/AC

A0A1S3MBI7 (1)
A0A1S3RDV7 (1)
A0A1S3SLA8 (1)
B5X3P0 (1)
A0A1S3N3T3 (1)
A0A1S3NZZ4 (1)
A0A1S3P094 (1)
A0A1S3PY93 (1)
Q19VI0 (1)
A0A1S3M1N8 (1)
A0A1S3NHN0 (1)
A0A1S3KZD6 (1)
A0A1S3SD21 (1)
A0A1S3LDQ3 (1)
A0A1S3P3J9 (1)
A0A1S3LD76 (1)
A0A1S3LEH9 (1)
A0A1S3MF70 (1)
A0A1S3MF67 (1)
A0A1S3MEX0 (1)
A0A1S3MEU5 (1)
A0A1S3RYH9 (1)
A0A1S3RYI5 (1)
A0A1S3P4C7 (1)
A0A1S3P297 (1)
A0A1S3P8N0 (1)
A0A1S3PB08 (1)
A0A1S3N1B9 (1)
C0HBN7 (1)
A0A1S3LIF1 (1)

CHEBI ID

CHEBI:13097 (1)
CHEBI:21278 (1)
CHEBI:63163 (1)
CHEBI:6209 (1)
CHEBI:44590 (1)
CHEBI:21260 (1)
CHEBI:44513 (1)
CHEBI:6206 (1)
CHEBI:44708 (1)
CHEBI:44466 (1)
CHEBI:13094 (1)
CHEBI:47822 (1)
CHEBI:60107 (1)
CHEBI:21486 (1)
CHEBI:60111 (1)
CHEBI:43088 (1)
CHEBI:47823 (1)
CHEBI:28538 (1)
CHEBI:47819 (1)
CHEBI:47821 (1)
CHEBI:21601 (1)
CHEBI:7203 (1)
CHEBI:77859 (1)
CHEBI:19473 (1)
CHEBI:11524 (1)
CHEBI:1021 (1)
CHEBI:12542 (1)
CHEBI:47984 (1)
CHEBI:1022 (1)
CHEBI:42925 (1)

Metabolite Name

Quercetin (2)
Myricetin (2)
Beta-Alanine (2)
Pyridoxine (2)
Choline (2)
L-Arginine (2)
Adenosine (2)
Guanine (2)
L-Tryptophan (2)
Adenine (2)
Pyridoxal (2)
L-Serine (2)
Caffeine (2)
L-Tyrosine (2)
Hypoxanthine (2)
D-carnitinyl-CoA (1)
Crotonobetainyl-CoA (1)
Adenosine thiamine triphosphate (1)
6-hydroxymethyl-dihydropterin pyrophosphate (1)
Hexadecanoyl-phosphate (n-C16:0) (1)
Psicoselysine (1)
Ferric 2,3-dihydroxybenzoylserine (1)
Dihydromonapterin (1)
Tetradecenoate (n-C14:1) (1)
L-alanine-L-glutamate (1)
L-alanine-D-glutamate (1)
Cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (1)
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran (1)
5'-deoxyribose (1)
Octanoate (protein bound) (1)

First Public Date

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2016 (4)
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2018 (1)

Modelling Approach

Other (7)
Constraint-based model (1)

Lab affiliation

University of Edinburgh (5)
WEHI (5)
The Walter and Eliza Hall Institute (3)
Institute of Biology Leiden, Leiden University (2)
Interfaculty Institute for Microbiology and Infection Medicine Tübingen Eberhard-Karls Universität Tübingen Auf der Morgenstelle 28 72072 Tübingen (2)
Bengbu medical college (1)
Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI),Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, South Africa (1)
Department of Biological Engineering, Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States (1)
Department of Intergrated Biomedical Sciences Institute of Infectious Disease and molecular medicine (1)
Head of the Antibiotic Resistance Research group Laboratory for Biology of Secondary Metabolism Institute of Microbiology BIOCEV Průmyslová 959 252 42 Vestec Czech Republic (1)
Head, Ubiquitin Signalling Division The Walter and Eliza Hall Institute of Medical Research 1G Royal Parade, Parkville 3052, VIC, Australia Professor, Department of Medical Biology University of Melbourne, 3010 Melbourne, VIC, Australia (1)
Head, Ubiquitin Signalling Division Walter and Eliza Hall Institute of Medical Research Australia (1)
Queensland Alliance for Agriculture and Food Innovation, University of Queensland (1)
TU Wien, Institute of Chemical Technologies and Analytics, 1060 Wien, Austria (1)
The Walter and Eliza Hall Institute for Medical Research, Parkville, VIC 3052, Australia and Department of Medical Biology, University of Melbourne, Parkville, VIC 3052, Australia (1)

IsPrivate

False (8)

Submitter Keywords

Not Peer Reviewed (7)

Classification

fungi (4)
bacteria (1)

Study type

Transcription profiling by array (3)
RNA-seq of coding RNA (3)
ChIP-seq (2)
Other (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

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2019 (64)
2018 (39)
2017 (28)
2014 (22)
2015 (20)
2026 (20)
2016 (18)
2012 (7)
2011 (4)
2008 (3)
2010 (2)
2013 (2)
2009 (2)
2005 (1)
2003 (1)

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Differential gene expression between BGC-823/NC and BGC-823/MTA2, SGC-7901/NC and SGC-7901/shMTA2 cells

Metastasis associated 1 family, member 2 (MTA2) gene is classified to metastasis associated gene family. We have previously reported that MTA2 gene was overexpressed in gastric cancer tissues, correlating with tumor invasion, lymph node metastasis, and advanced TNM stage. MTA2 knockdown significantl...

ORGANISM(S): Homo sapiens

2015-04-08 | E-MTAB-3469 | biostudies-arrayexpress

Paleofuran BGC

PRJEB75212 | ENA

BGC-823 Cells: Control vs. BGC-823 Cells METTL3 Overexpressed

PRJNA881250 | ENA

BGC-MAC and BGC-MAP: Attention-Based Models for Biosynthetic Gene Cluster Classification and Product Matching.

Not available

S-EPMC12744964 | biostudies-literature

Expression data from Human gastric cancer cells (BGC‐823)

PRJNA1105648 | ENA

Expression data from Human gastric cancer cells (BGC‐823)

The goal of this study is to analyze the expression data from Human gastric cancer cells (BGC‐823) followed by PGRN-downregulation and search potential therapeutic targets of diseases associated with Helicobacter pylori infection

ORGANISM(S): Homo sapiens

2024-05-04 | GSE266076 | GEO

Gene expression profiling of BGC-823 cells with or without PCDH9-Cter overexpression

PRJNA1046162 | ENA

Streptomyces globisporus strain:BGC-LCY12

Globismycin A, a fluorescent aromatic polyketide from Streptomyces globisporus SCSIO LCY12 and fungal mode of cyclization

PRJNA762211 | ENA

Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells (RNA-seq)

Aberrant DNA hypermethylation of CpG island (CGI) promoters are associated with transcriptional repression of many tumor suppressor genes and lead to tumor progression in many cancers. Most recently, one research group observed that aberrantly hypermethylated genes in multiple cancers are already re...

ORGANISM(S): Homo sapiens

2014-07-01 | E-GEOD-43093 | biostudies-arrayexpress

Imaging pharmacodynamics of the alpha-folate receptor-targeted thymidylate synthase inhibitor BGC 945.

Not available

S-EPMC3892028 | biostudies-literature

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