Bifidobacteria - OmicsDI

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Unknown (815)
Genomics (238)
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Organisms

Bifidobacterium breve UCC2003 (19)
Mus musculus (19)
Homo sapiens (13)
Stagonospora (9)
Wolbachia pipientis wMelCS (9)
Pyrenochaeta sp. (9)
Thalassiosira oceanica (9)
Bifidobacterium bifidum PRL2010 (8)
Bifidobacterium bifidum (7)
Bifidobacterium adolescentis (7)
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 (6)
Bifidobacterium breve 12L (5)
Bifidobacterium breve (3)
Bifidobacterium (3)
Bifidobacterium catenulatum subsp. kashiwanohense (2)
Bifidobacterium longum subsp. infantis (2)
Bifidobacterium animalis subsp. lactis Bl-04 (1)
Bifidobacterium animalis subsp. lactis (1)
Rattus norvegicus (1)
Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 (1)
Bifidobacterium sp. 202 (1)
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 (1)
Bifidobacterium sp. (1)
Lactiplantibacillus plantarum WCFS1 (1)
Citrobacter portucalensis (1)
Pseudomonas aeruginosa PAO1 (1)
feces metagenome (1)
Macaca mulatta (1)
Sus scrofa (1)
cellular organisms (1)

Organisms

Mus musculus (14)
Homo sapiens (12)
Bifidobacterium breve UCC2003 (9)
Bifidobacterium bifidum (8)
human gut metagenome (5)
Bifidobacterium adolescentis (4)
Bifidobacterium longum (4)
Bifidobacterium (3)
Bifidobacterium breve (3)
mouse gut metagenome (3)
Bifidobacterium longum subsp. longum GT15 (2)
Bifidobacterium longum subsp. infantis (2)
Bifidobacterium animalis subsp. lactis (2)
Bifidobacterium animalis (2)
Bifidobacterium pseudocatenulatum (2)
feces metagenome (2)
Bifidobacterium breve MCC 1114 (1)
Bifidobacterium breve MCC 0121 (1)
Clostridium perfringens ATCC 13124 (1)
Bifidobacterium bifidum PRL2010 (1)
Bifidobacterium breve MCC 1604 (1)
Bifidobacterium breve MCC 1605 (1)
Bifidobacterium breve MCC 1128 (1)
Bifidobacterium breve MCC 1454 (1)
Bifidobacterium breve MCC 0476 (1)
Bifidobacterium breve MCC 0305 (1)
Bifidobacterium animalis subsp. animalis ATCC 27672 (1)
Bifidobacterium animalis subsp. animalis MCC 0483 (1)
Bifidobacterium animalis subsp. animalis MCC 0499 (1)
Bifidobacterium animalis subsp. lactis ATCC 27536 (1)

Repository

ENA (236)
geo (57)
biostudies-arrayexpress (25)
pride (9)
GNPS (2)
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jPOST (1)

Tissue

Primary cell line cell (4)
Colonic mucosa (1)
Colon (1)

Disease

Bowel cancer (1)
Colorectal Neoplasms (1)

Technology Type

Mass Spectrometry (9)
Shotgun proteomics (6)
Bottom-up proteomics (2)
Mass spectrometry assay (1)
Mass spectrometry (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

TripleTOF 6600 (4)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2026 (16)
2015 (10)
2014 (9)
2011 (9)
2017 (9)
2013 (8)
2024 (6)
2023 (5)
2020 (5)
2012 (4)
2010 (4)
2018 (3)
2016 (2)
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2021 (2)
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2009 (1)
2019 (1)
2007 (1)

CHEBI ID

CHEBI:119928 (1)
CHEBI:32800 (1)
CHEBI:86369 (1)
CHEBI:28229 (1)
CHEBI:18139 (1)
CHEBI:28061 (1)
CHEBI:30764 (1)
CHEBI:25682 (1)
CHEBI:15672 (1)
CHEBI:62207 (1)
CHEBI:16700 (1)
CHEBI:53460 (1)
CHEBI:53014 (1)
CHEBI:28645 (1)
CHEBI:45744 (1)
CHEBI:88550 (1)
CHEBI:41139 (1)
CHEBI:88824 (1)
CHEBI:53488 (1)
CHEBI:28997 (1)
CHEBI:28125 (1)
CHEBI:30817 (1)
CHEBI:139138 (1)
CHEBI:45441 (1)
CHEBI:17768 (1)
CHEBI:77086 (1)
CHEBI:70979 (1)
CHEBI:40521 (1)
CHEBI:46905 (1)
CHEBI:68441 (1)

Metabolite Name

Dihomo-gamma-linolenic acid (DGLA) (1)
Eicosatrienoic acid (1)
Taurohyodeoxycholic Acid (1)
Hyocholic acid (1)
Taurochenodesoxycholic acid (1)
4,8,12,15,19-Docosapentaenoic acid (1)
Alpha-Linolenic acid (1)
Gamma-Linolenic acid (1)
Taurolithocholic acid (1)
Chenodeoxycholic acid (1)
Taurodeoxycholic acid (1)
Ursodeoxycholic acid (1)
Lithocholic acid (1)
Glycochenodeoxycholic acid (1)
Eicosapentaenoic acid (1)
Taurocholic acid (1)
Deoxycholic acid (1)
Cholic acid (1)
Glycocholic acid (1)
Docosahexaenoic acid (1)
Arachidonic acid (1)
Glycoursodeoxycholic acid (1)
Oleic acid (1)
Linoleic acid (1)

First Public Date

2014 (38)
2024 (29)
2026 (24)
2022 (21)
2020 (21)
2023 (18)
2017 (13)
2021 (12)
2019 (12)
2018 (12)
2025 (11)
2015 (9)
2013 (9)
2016 (7)

Modelling Approach

Constraint-based model (1)

Study status

Not yet recruiting (1)
Completed (1)

Lab affiliation

ETH Zurich (2)
Department of Food Science and Technology, The Ohio State University, Columbus, OH, USA (1)
Department of Life, Health and Environmental Sciences (1)
Bavarian Center for Biomolecular Mass Spectrometry, TUM School of Life Sciences, Technical University Munich (TUM), Gregor-Mendel-Straße 4, 85354 Freising, GERMANY (1)
Mass Spectrometry Research Infrastructure, Aarhus University (1)
David A. Sela Associate Professor, Dept. of Food Science Adjunct Associate Professor, Dept. of Microbiology University of Massachusetts Amherst Adjunct Associate Professor, Dept. of Microbiology & Physiological Systems University of Massachusetts Medical School selalab.org 413.545.1010 (1)
Liisa Arike, PhD Researcher Mucin Biology Group Department of Medical Biochemistry and Cell Biology University of Gothenburg Sweden (1)
Associate Professor, Dept. of Food Science Adjunct Associate Professor, Dept. of Microbiology University of Massachusetts Amherst Adjunct Associate Professor, Dept. of Microbiology & Physiological Systems University of Massachusetts Medical School selalab.org 413.545.1010 (1)

IsPrivate

False (1)

Classification

bacteria (4)

Study type

Transcription profiling by array (20)
Comparative genomic hybridization by array (3)
RNA-seq of coding RNA (2)
Interventional (2)

Release Date

2023 (82)
2022 (81)
2021 (76)
2019 (69)
2020 (67)
2024 (63)
2025 (52)
2018 (51)
2017 (45)
2015 (42)
2014 (41)
2016 (39)
2013 (25)
2011 (22)
2012 (18)
2010 (17)
2009 (10)
2008 (9)
2007 (6)
2005 (5)
2003 (5)
2026 (4)
2006 (4)
2002 (3)
2004 (2)
2001 (1)
2000 (1)

Location

Australia (1)

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Dietary fiber selectively regulates intestinal persistence of probiotic Bifidobacteria

PRJNA1463245 | ENA

Dietary fiber selectively regulates intestinal persistence of probiotic Bifidobacteria

PRJNA1465774 | ENA

Bifidobacteria compensate for genotype in lactose tolerance

PRJEB73969 | ENA

probiotic metagenome strain:lactobacilli,bifidobacteria | breed:infant

probiotic metagenome strain:lactobacilli,bifidobacteria | breed:infant Metagenome

PRJNA1061771 | ENA

Dietary fiber selectively regulates intestinal persistence of probiotic Bifidobacteria [Fecal microbiota]

PRJNA1465766 | ENA

Dietary fiber selectively regulates intestinal persistence of probiotic Bifidobacteria

Bifidobacteria is strongly associated with human health and dominates the gut microbiota of breast-fed infants. However, Bifidobacteria persists at high abundance in only a subset of individuals after weaning, and the factors that regulate intestinal persistence of Bifidobacteria are poorly understo...

ORGANISM(S): Mus musculus

2026-08-31 | GSE330838 | GEO

Dietary fiber selectively regulates intestinal persistence of probiotic Bifidobacteria

ORGANISM(S): Mus musculus

2026-08-31 | GSE330259 | GEO

Dietary fiber selectively regulates intestinal persistence of probiotic Bifidobacteria [Fecal microbiota]

ORGANISM(S): Mus musculus

2026-08-31 | GSE330841 | GEO

Donor-derived bifidobacteria isolated from FMT recipients

Cultivation and genomics prove long-term engraftment of donor-derived bifidobacteria in fecal microbiota transplantation recipients

PRJEB35833 | ENA

Fecal Bifidobacteria and Lactobacilli through Culture-Dependent and Independent Approaches

PRJEB9917 | ENA

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