Bio-control - OmicsDI

Show results for

Unknown (2372)
Transcriptomics (991)
Proteomics (672)
Genomics (529)
Metabolomics (63)
Models (6)
Clinical (4)
Genomic (2)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (372)
Mus musculus (208)
Thermus thermophilus HB8 (66)
Rattus norvegicus (37)
Saccharomyces cerevisiae (36)
Arabidopsis thaliana (32)
Drosophila melanogaster (31)
Rhizobium leguminosarum (29)
Caenorhabditis elegans (28)
Danio rerio (16)
Gallus gallus (16)
Oncorhynchus mykiss (14)
Sus scrofa (9)
Bos taurus (9)
Oryza sativa Japonica Group (7)
Solanum lycopersicum (6)
Schizosaccharomyces pombe (5)
Escherichia coli (5)
Oryza sativa (4)
Brassica napus (4)
Enterococcus faecium (3)
Salmo salar (3)
Populus tremula x Populus alba (3)
Plasmodium falciparum (3)
Candida albicans (3)
Eugenia uniflora (2)
Oikopleura dioica (2)
Laccaria bicolor (2)
Influenza A virus (1)
Mammalia (1)

Organisms

Homo sapiens (115)
Mus musculus (84)
Rattus norvegicus (19)
Oncorhynchus mykiss (10)
Saccharomyces cerevisiae (8)
Arabidopsis thaliana (6)
Gallus gallus (5)
rhizosphere metagenome (5)
soil metagenome (5)
Drosophila melanogaster (4)
Bacillus subtilis (4)
Solanum lycopersicum (4)
Nicotiana tabacum (3)
Brassica napus (3)
Escherichia coli (3)
Caldicellulosiruptor bescii DSM 6725 (2)
unidentified (2)
Bacillus amyloliquefaciens (2)
Bos taurus (2)
Caenorhabditis elegans (2)
Sus scrofa (2)
Brevibacillus brevis X23 (1)
Pseudomonas sp. A34-9 (1)
Serratia sp. LS-1 (1)
Noccaea goesingensis (1)
Bacillus sp. CKA1(RSM) (1)
Chryseobacterium sp. c4a (1)
Pyrocoelia pectoralis (1)
Paenibacillus polymyxa CR1 (1)
Phelipanche ramosa (1)

Repository

biostudies-arrayexpress (966)
pride (633)
ENA (468)
geo (72)
MetaboLights (63)
EGA (23)
MassIVE (14)
iProX (12)
BioModels (6)
jPOST (6)
NODE (3)
dbGaP (2)
PanoramaPublic (1)

Tissue

Cell culture (120)
Brain (47)
Epithelial cell (36)
Blood plasma (21)
Colon (20)
Kidney (18)
Leaf (18)
Permanent cell line cell (16)
Fibroblast (15)
Plant cell (15)
Blood serum (13)
Heart (13)
Blood (12)
HCT-116 cell (12)
Whole body (12)
Root (11)
Embryo (10)
Liver (10)
T cell (10)
Lung (8)
Skin (8)
Stem cell (8)
Primary cell (7)
Cell suspension culture (6)
HeLa cell (6)
Hepatocyte (5)
Malignant cell (5)
Melanocyte (5)
Cell line (1)
Hepatocytes (1)

Disease

Breast cancer (13)
Disease free (12)
Malignant neoplasm of ovary (9)
Alzheimer's disease (7)
Cardiovascular system disease (7)
Colon cancer (7)
Lung cancer (6)
Brain cancer (5)
Cervix carcinoma (4)
Melanoma (4)
Normal (2)
Colorectal Neoplasms (2)
Neuroendocrine tumor (1)
Burn injury (1)
Measles virus infected (1)
Myeloid neoplasm (1)
Colon carcinoma (1)
Small cell lung carcinoma (1)
Temporal lobe epilepsy (1)
Viral myocarditis (1)
Partially decidualised (1)
Reference (1)
Prostate carcinoma (1)
Adenocarcinoma (1)
Non infected (1)
Multiple myeloma (1)
H9N2 infected (1)
Malignant neoplasm of colon (1)
Cachexia (1)
Pneumonia (1)

Technology Type

Mass Spectrometry (633)
Shotgun proteomics (348)
Affinity purification coupled with mass spectrometry proteomics (84)
Bottom-up proteomics (82)
Gel-based experiment (77)
Data-dependent acquisition (65)
Mass spectrometry (55)
SWATH MS (29)
Data-independent acquisition (21)
Top-down proteomics (14)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
Mass spectrometry assay (6)
SRM/MRM (6)
Affinity proteomics (4)
HDMSE (3)
All-ion fragmentation (2)
DiaPASEF (2)
MSE (2)
Illumina Omni 2.5, Illiumina Omni 2.5 (1)
Illumina HiSeq 2500 (1)
AB SOLiD System 3.0 (1)
Illumina HiSeq 2000 (1)
Illumina MiSeq (1)
NMR spectroscopy assay (1)
NMR spectroscopy (1)
Metaproteomics (1)
Proteogenomics (1)

Instrument Platform

Illumina NovaSeq 6000 (61)
NextSeq 500 (38)
Illumina HiSeq 2500 (34)
Illumina HiSeq 4000 (15)
NextSeq 550 (11)
NextSeq 2000 (10)
Illumina HiSeq 2000 (7)
Genepix (4)
Illumina MiSeq (4)
Illumina HiSeq 1500 (4)
Axon- GenePix4000B (3)
Illumina NovaSeq X (3)
BGISEQ-500 (3)
ScanArray [PerkinElmer] (2)
Illumina Genome Analyzer IIx (2)
Tapestri Platform (1)
Ribo-Zero Plant rRNA removal kit (Illumina); TruSeq Stranded Total RNA LT kit (Illumina) (1)
RNeasy Plant Mini Kit (QIAGEN) (1)
2D clinostat (1)
Thermal cycler; magnetic separation rack; Qubit Fluorometer; Agilent TapeStation 4200 (1)
Microcentrifuge; magnetic separation rack; Qubit Flu/spectrophotometer; Agilent TapeStation 4200 (1)
Incubator shaker; spectrophotometer; Cmag measurement system; flow cytometer (1)
Computer (1)
Element AVITI (1)
10X Genomics Chromium Controller (1)
Agilent 2001 Bioanalyzer (1)
10X Genomics Chromium (1)
PCR machine; AMPure XP beads; TruSeq Stranded mRNA stranded prep. kit (1)
PCR machine; Superscript II polymerase Kit (Invitrogen); PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep kit.; TruSeq Stranded mRNA stranded prep. kit (1)
Centrifuge 5424R (Eppendorf); miRNeasy Mini Kit (Qiagen); TURBO^TM DNase (Ambion); Bioanalyser (Agilent) (1)

Publication Date

2010 (186)
2022 (151)
2025 (148)
2024 (115)
2023 (105)
2026 (100)
2014 (97)
2013 (94)
2021 (92)
2020 (88)
2011 (87)
2012 (83)
2018 (66)
2016 (66)
2019 (60)
2015 (58)
2008 (47)
2009 (39)
2017 (34)
2007 (20)
2006 (11)
2005 (10)
2004 (9)
2003 (2)

UNIPROT ID/AC

O43684 (3)
Q12834 (3)
Q13257 (3)
Q9Y6D9 (3)
Q9UJX3 (2)
Q9UJX2 (2)
Q9UJX4 (2)
Q9UM13 (2)
Q8NHZ8 (2)
Q9H1A4 (2)
P30260 (2)
Q9BS18 (2)
Q9UJX6 (2)
Q9UJX5 (2)
Q13042 (2)
Q60566 (2)
Q9NYG5 (2)
P01574 (1)
Q00534 (1)
P30279 (1)
P30281 (1)
O60566 (1)
Q01094 (1)
P24941 (1)
P11802 (1)
P06400 (1)
P24864 (1)
P24385 (1)
P01106 (1)
P01562 (1)

CHEBI ID

CHEBI:30769 (17)
CHEBI:15741 (16)
CHEBI:18186 (14)
CHEBI:16704 (14)
CHEBI:16335 (14)
CHEBI:17596 (14)
CHEBI:16708 (13)
CHEBI:16750 (13)
CHEBI:27897 (13)
CHEBI:15756 (13)
CHEBI:16811 (12)
CHEBI:28044 (12)
CHEBI:17568 (12)
CHEBI:16235 (12)
CHEBI:30746 (11)
CHEBI:16411 (11)
CHEBI:16857 (11)
CHEBI:15891 (11)
CHEBI:28875 (11)
CHEBI:6650 (11)
CHEBI:18237 (11)
CHEBI:16196 (11)
CHEBI:18050 (11)
CHEBI:16040 (11)
CHEBI:17203 (11)
CHEBI:16015 (11)
CHEBI:15428 (11)
CHEBI:18012 (11)
CHEBI:17295 (11)
CHEBI:16914 (11)

Metabolite Name

Citric acid (18)
Inosine (15)
Uridine (14)
Taurine (12)
Succinic acid (12)
Uric acid (12)
Azelaic acid (11)
Xanthine (11)
L-Tyrosine (11)
Indolelactic acid (10)
Benzoic acid (10)
Cholic acid (10)
Glycocholic acid (10)
Hippuric acid (10)
L-Phenylalanine (10)
Hypoxanthine (10)
Valine (9)
Pyroglutamic acid (9)
Xanthosine (9)
Sebacic acid (9)
Glyceric acid (9)
Malic acid (9)
Hexadecanedioic acid (9)
Adenine (9)
Guanosine (9)
Tryptophan (9)
Arachidonic acid (8)
Suberic acid (8)
Palmitic acid (8)
Dodecanedioic acid (8)

First Public Date

2014 (77)
2025 (49)
2024 (47)
2023 (45)
2020 (43)
2026 (42)
2022 (41)
2021 (28)
2018 (22)
2019 (19)
2017 (19)
2016 (13)
2015 (12)
2013 (11)

Modelling Approach

Ordinary differential equation model (6)

Study status

Active, not recruiting (1)
Not provided (1)
Recruiting (1)
Not yet recruiting (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (16)
EDyP (11)
Head of the Curie Institute Mass Spectrometry Platform (7)
David H. Koch Institute for Integrative Cancer Research Howard Hughes Medical Institute Massachusetts Institute of Technology Cambridge, MA 02139, USA (6)
Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, SE-751 23 Uppsala, Sweden. (4)
USDA-ARS (4)
CRUK Cambridge Institute University of Cambridge Li Ka Shing Centre Robinson Way CB2 0RE Cambridge United Kingdom (3)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (3)
Department of Physiology, Faculty of Pharmacy, University of Valencia, Burjassot, Valencia, Spain (3)
Masaryk University, Faculty of Science (3)
Medical Research Council Senior Research Fellow Associate Professor in RNA Biochemistry and Research Group Leader Centre for Synthetic and Systems Biology (SynthSys) University of Edinburgh Max Born Crescent CH Waddington Building, room 3.06 EH9 3BF Edinburgh UK (3)
Rochester Institute of Technology (3)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (3)
USDA ARS; Boyce Thompson Institute; Cornell University (3)
University of York (3)
Aarhus University (2)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
BIOCEV, First Faculty of Medicine, Charles University, Czech Republic (2)
Beijing Tongren Hospital, Capital Medical University (2)
Boston University Medical Campus 670 Albany St., Rm. 509 Boston, MA 02118 USA (2)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (2)
Cancer Research UK Cambridge Institute University of Cambridge Li Ka Shing Centre Cambridge CB2 0RE United Kingdom (2)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (2)
Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA (2)
Department of Biochemistry, Faculty of Science, Masaryk University (2)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (2)
Department of Chemistry, University of California Riverside (2)
Department of Life and Environmental Sciences, University of Cagliari (2)
Department of Pharmacy, University of Salerno, 84084 Fisciano, Italy (2)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden (2)