Biobank - OmicsDI

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Unknown (13489)
Genomics (765)
Transcriptomics (217)
Proteomics (85)
Genomic (37)
Metabolomics (34)
Clinical (12)
Other (10)
Methylation profiling (8)

Organisms

Homo sapiens (444)
Schizophyllum commune H4-8 (72)
Mycobacterium tuberculosis SP7 (72)
Oryza sativa Japonica Group (72)
Eriocheir sinensis (72)
Candidatus Endoriftia persephonae (72)
Mycobacterium tuberculosis SP10 (72)
Mycobacterium tuberculosis SP13 (72)
Mycobacterium tuberculosis SP22 (72)
Enterobacter ludwigii (72)
Chlamydomonas reinhardtii (72)
Lama (72)
Pyricularia oryzae P131 (72)
Enterococcus mundtii CRL35 (72)
Pongo pygmaeus (72)
Oncorhynchus tshawytscha (72)
Pseudomonas canadensis (72)
Strongylocentrotus purpuratus (72)
Influenza A virus (A/California/04/2009(H1N1)) (72)
Salmonella enterica subsp. enterica serovar Typhimurium (72)
Homo (72)
Bradyrhizobium diazoefficiens (72)
Streptococcus pyogenes STAB901 (72)
Mus musculus (50)
Rattus norvegicus (3)
Pan troglodytes (1)
Canis lupus familiaris (1)
Macaca fascicularis (1)
Caenorhabditis elegans (1)
Macaca fascicularis fascicularis (1)

Organisms

Homo sapiens (311)
Mus musculus (44)
food metagenome (4)
Caenorhabditis elegans (3)
human gut metagenome (2)
Dimocarpus longan (1)
Catenibacterium sp. sp000437715 (1)
Cutibacterium acnes (1)
Canis lupus (1)
Mycobacteroides abscessus (1)
Macaca fascicularis (1)
Mus (1)
Helicobacter pylori (1)
Pseudomonas aeruginosa (1)
Macaca mulatta (1)
Rattus norvegicus (1)
Canis lupus familiaris (1)
Bacteria (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Klebsiella pneumoniae (1)

Repository

ENA (510)
EGA (215)
geo (160)
biostudies-arrayexpress (113)
pride (72)
dbGaP (37)
MetaboLights (30)
GNPS (4)
iProX (4)
jPOST (4)
MassIVE (4)
EVA (1)
GPMDB (1)
NODE (1)

Tissue

Blood plasma (12)
Kidney (6)
Brain (5)
Epithelial cell (5)
Liver (5)
Breast (4)
Lung (4)
Melanocyte (3)
Cerebrospinal fluid (3)
Lymph node (3)
Blood serum (3)
Colon (3)
Blood (3)
Cell culture (3)
Urine (2)
Spleen (2)
Mesenteric adipose tissue (1)
Meningioma cell (1)
Mesenchymal stromal cell (1)
Neuron of the substantia nigra (1)
Umbilical cord (1)
Mammary gland tumor cell (1)
Stromal cell of pancreas (1)
Epithelial ovarian cancer cell (1)
Epithelial cell of pancreas (1)
Arteriole (1)
Synovial tissue (1)
Glioblastoma cell (1)
Substantia nigra (1)
Renal cortical epithelial cell (1)

Disease

Breast cancer (5)
Colorectal Neoplasms (3)
Glioblastoma (3)
Colon cancer (3)
Neoplasms (2)
Colorectal cancer (2)
Metastatic melanoma (2)
Skin melanoma (2)
Urinary bladder cancer (2)
Malignant neoplasm of ovary (2)
Disease free (2)
Acute leukemia (2)
Acute Lymphoblastic Leukaemia (1)
Bladder tumour (1)
Diverticulosis (1)
Carcinoma, Hepatocellular (1)
Prostatic Neoplasms (1)
Carcinoma (1)
Malignant neoplasm of colon (1)
Stomach Neoplasms (1)
Gastrointestinal Neoplasms (1)
Not Available (1)
Nephronophthisis (1)
Vascular myelopathy (1)
Gastroesophageal adenocarcinoma (1)
High grade glioma (1)
Nephrotic syndrome (1)
Diabetes mellitus (1)
Permanent neonatal diabetes mellitus (1)
Long COVID (1)

Technology Type

Mass Spectrometry (72)
Shotgun proteomics (46)
Mass spectrometry (18)
Bottom-up proteomics (13)
Data-independent acquisition (7)
NMR spectroscopy (6)
Mass spectrometry assay (5)
Affinity purification coupled with mass spectrometry proteomics (5)
SWATH MS (4)
Data-dependent acquisition (4)
DiaPASEF (2)
Affymetrix Axiom UK Biobank + imputation to 1000GP3 and UK10K (1)
Human Cardio Metabochip (1)
ILLUMINA, NextSeq 500, HiSeq X Ten (1)
Nanostring cancer pathway, Nanostring Cancer Immune, ILLUMINA, Affymetrix GeneChipÂ® Human Transcriptome Array 2.0, Illumina HiSeq 4000 (1)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
HiSeq X Ten, ILLUMINA, Illumina HiSeq 2500 (1)
ILLUMINA, RNAseq, Illumina HiSeq 2000, Illumina Human Methylation 450k BeadChip (1)
ILLUMINA, Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
SomaScan affinity proteomics (1)
Proteogenomics (1)
Affinity proteomics (1)
All-ion fragmentation (1)
Gel-based experiment (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (19)
NextSeq 500 (14)
Illumina HiSeq 4000 (12)
Illumina HiSeq 2500 (11)
Q Exactive (9)
Liquid Chromatography MS - negative - reverse phase (6)
Nuclear Magnetic Resonance (NMR) - (5)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - negative (2)
Chromium Controller (10X) (1)
Single nuclei were captured using the 10x Genomics Chromium Controller. (1)
Ilumina HiScan H166 (1)
Illumina iScan (1)
Ion Torrent Proton (1)
BGISEQ-500 (1)
Affymetrix (1)
TripleTOF 5600 (1)
MaXis (1)
Instrument (1)
TripleTOF 6600 (1)
Q Exactive HF (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (negative mode) (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (positive mode) (1)
LECO Pegasus III, GCTOFMS (1)
Xevo G2S QTOF mass spectrometer (Waters) (1)
Xevo G2S QTOF mass spectrometer (Waters Corp.) (1)
LTQ Velos (Thermo Scientific) (1)
Nuclear Magnetic Resonance (NMR) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)

Publication Date

2025 (56)
2026 (49)
2024 (41)
2021 (37)
2022 (34)
2023 (29)
2020 (26)
2019 (24)
2017 (19)
2018 (18)
2015 (18)
2016 (12)
2012 (9)
2013 (7)
2014 (4)
2011 (3)
2008 (2)
2010 (1)

CHEBI ID

CHEBI:15891 (13)
CHEBI:15428 (13)
CHEBI:16737 (11)
CHEBI:16919 (11)
CHEBI:17368 (11)
CHEBI:18237 (11)
CHEBI:30769 (10)
CHEBI:16449 (10)
CHEBI:25017 (10)
CHEBI:28790 (9)
CHEBI:17268 (9)
CHEBI:17750 (9)
CHEBI:17596 (9)
CHEBI:32816 (9)
CHEBI:17822 (9)
CHEBI:17754 (9)
CHEBI:22660 (9)
CHEBI:28300 (9)
CHEBI:18257 (9)
CHEBI:24898 (9)
CHEBI:27570 (9)
CHEBI:28044 (9)
CHEBI:18186 (9)
CHEBI:43355 (8)
CHEBI:15611 (8)
CHEBI:18012 (8)
CHEBI:15354 (8)
CHEBI:17126 (8)
CHEBI:16704 (8)
CHEBI:26986 (8)

Metabolite Name

Hypoxanthine (8)
Glycine (8)
Serotonin (7)
Taurine (7)
Lysine (7)
Histidine (7)
Creatinine (7)
Arginine (7)
Creatine (7)
Ribitol (6)
N-acetylphenylalanine (6)
Erythritol (6)
3-methylhistidine (6)
1-methylhistidine (6)
Urea (6)
Glycerol (6)
Sucrose (6)
Myo-inositol (6)
L-Tyrosine (6)
Valine (6)
Uridine (6)
Tyrosine (6)
Tryptophan (6)
Threonine (6)
Serine (6)
Sarcosine (6)
Proline (6)
Phenylalanine (6)
Ornithine (6)
Nicotinamide (6)

First Public Date

2025 (85)
2024 (71)
2026 (66)
2023 (45)
2021 (43)
2022 (39)
2020 (32)
2018 (32)
2017 (26)
2015 (26)
2019 (20)
2014 (13)
2016 (10)
2013 (2)

Classification

bacteria (3)
viruses (1)

Study status

Recruiting (7)
Completed (2)
Enrolling by invitation (1)
Terminated (1)
Not yet recruiting (1)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (27)
Methylation profiling by array (9)
RNA-seq of coding RNA from single cells (9)
RNA-seq of total RNA (9)
Observational (9)
ChIP-seq (4)
Human - High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
Spatial transcriptomics by high-throughput sequencing (3)
MicroRNA profiling by array (3)
Human - Methylation microarray (2)
Comparative genomic hybridization by array (2)
Interventional (2)
Human - Two-color microarray (1)
One-color microarray (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
ScATAC-seq (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)
Proteomic profiling by array (1)
Observational patient registry (1)

Release Date

2024 (2785)
2025 (2570)
2023 (1972)
2022 (1733)
2021 (1348)
2020 (885)
2019 (615)
2018 (435)
2026 (323)
2017 (303)
2016 (214)
2015 (149)
2014 (94)
2013 (73)
2012 (47)
2011 (24)
2010 (13)
2009 (8)
2008 (4)
2006 (3)
2007 (1)
2005 (1)

Lab affiliation

Laboratory for Functional Genome Analysis (LAFUGA), Gene Center, LMU Munich, 81377 Munich, Germany (3)
Clinical Protein Science & Imaging, Dept. of Measurement Technology and Industrial Electrical Engineering, Lund University, Lund, Sweden (2)
Div. Clinical Protein Science & Imaging, Dept. of Clinical Sciences (Lund) and Dept. of Biomedical Engineering, Lund University, Lund, Sweden (2)
Department of clinical Biochemistry, Copenhagen University Hospital, Bispebjerg and Frederiksberg Hospital, Denmark (2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (2)
Department of Nephrology, Children's Hospital of Fudan University, National Pediatric Medical Center of China, Shanghai, China. (1)
Immunology,College of Medicine and Public Health, Flinders University (1)
Department of Anaesthesiology and Pain Medicine, Cantonal Hospital of St. Gallen, St. Gallen, Switzerland (1)
Flemish Institute for Technological Research (VITO) Boeretang 200 2400 Mol (1)
Bioinformatics, TruDiagnostic, USA (1)
Research and Development, NHS Blood and Transplant Nuffield Department of Surgical Sciences, and Oxford Biomedical Research Centre, University of Oxford (1)
Helmholtz Center for Infection Research (1)
Proteomics and Signal Transduction Max Planck Institute of Biochemistry Am Klopferspitz 18 82152 Martinsried, Germany (1)
Cell Biology Harvard Medical School (1)
Gonçalo Moniz Institute, FIOCRUZ, Salvador, Brazil D'Or Institute for Research and Education (IDOR), Salvador, Brazil Center for Biotechnology and Cell Therapy, São Rafael Hospital, Salvador, Brazil (1)
Proteomics and Signal Transduction Max Planck Institute of Biochemistry Am Klopferspitz 18 82152 Martinsried (1)
University of Liverpool, Institute of Life Course and Medical Sciences, University of Liverpool, United Kingdom (1)
School of Biomedical Sciences, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, 2052, Australia (1)
Proteomics Unit. Spanish National Biotrechnology Centre. (1)
Uppsala Universtiy Dept. Chemistry-BMC Analytical Chemistry (1)
Group leader Laboratory Hi-TIDe: Immunopeptidomics Head of clinical Mass spectrometry unit Center of experimental therapeutics Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Biopôle 3 Chemin des Boveresses 155, CH-1066 Lausanne (1)
M4I Division of Imaging Mass Spectrometry, Maastricht, The Netherlands (1)
Department of Chemistry, Stanford University Stanford ChEM-H (1)
Washington University, St. Louis (1)
Associate Professor Tracy Putoczki The Walter and Eliza Hall Institute of Medical Research Australia (1)
Toronto General Hospital Research Institute, UniversityHealth Network, Toronto, Canada Department of Medicine, Division of Nephrology, University Health Network, Toronto, Canada (1)
Clinical Proteomics Mass Spectrometry, Department of Oncology-Pathology, Science for Life Laboratory and Karolinska Institutet, Stockholm, Sweden (1)
Department of Cancer Research and Molecular Medicine, NTNU, Norway (1)
Biomedical Research Institute of Lleida Dr. Pifarré Foundation (IRBLLEIDA) - +Pec Proteomics Research Group (+PPRG) - Neuroscience Area – University Hospital Arnau de Vilanova (HUAV), 80 Av. Rovira Roure, 25198, Lleida, Spain Department of Medical Basic Sciences, University of Lleida (UdL), +Pec Proteomics Research Group (+PPRG), 25198, Lleida, Spain (1)
Univ.Prof. PD DI Dr.techn. Professor for Bioanalytics TU Wien Faculty of Technical Chemistry Institute of Chemical Engineering and Analytics Department of Imaging and Analytical Chemistry Research Group Bioanalytics Getreidemarkt 9/E164 1060 Vienna Austria (1)

Location

Canada (3)
Germany (3)
France (3)
Belgium (3)
United States (3)
Puerto Rico (2)
Russia (2)
Sudan (1)
Nepal (1)
Kyrgyzstan (1)
Guatemala (1)
Ghana (1)
Dominican Republic (1)
Costa Rica (1)
Democratic Republic of the Congo (1)
Cameroon (1)
Algeria (1)
Honduras (1)
Myanmar (1)
Iceland (1)
Kazakhstan (1)
Vietnam (1)
Nigeria (1)
Kenya (1)
South Africa (1)
Iran (1)
Jordan (1)
Bangladesh (1)
Hong Kong (1)
Indonesia (1)

Keyword

DNA Methylation (2)
Biobank (2)
Fresh-frozen tissue (1)
Resistance (1)
Biobanking (1)
Colorectal cancer with unresectable metastases to the liver (1)
Bacterial Risk Factors (1)
DNA Sequencing (1)
SMRT/PacBio (1)
Molecular Profiling (1)
Plasma (1)
Phase I Clinical Trial Candidates (1)
Next Generation Sequencing (1)
Cell-free DNA (1)
Metastases (1)
Inflammatory bowel disease (1)
Post-operative cognitive disorders (1)
Immune system. (1)
Biomarkers (1)
Liver (1)
Avastin (1)
FOLFOX (1)
Microbiota (1)
Helicobacter pylori (1)
FOLFIRI (1)

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Cancer Moonshot Biobank

PRJNA671160 | ENA

Cancer Moonshot Biobank

PRJNA671161 | ENA

NHLBI TOPMed: Partners HealthCare Biobank

PRJNA300701 | ENA

IPM BioBank GWAS

The Institute for Personalized Medicine (IPM) Biobank Project is a consented, EMR-linked medical care setting biorepository of the Mount Sinai Medical Center (MSMC) drawing from a population of over 70,000 inpatients and 800,000 outpatient visits annually. MSMC serves diverse local commun...

phs000388 | dbGaP

Harmonization of Biobank Education for Biobank Technicians: Identification of Learning Objectives.

Not available

S-EPMC9336536 | biostudies-literature

PAGE: IPM BioMe Biobank

The Institute for Personalized Medicine (IPM) BioMe Biobank is a consented, EMR-linked medical care setting biorepository of the Mount Sinai Medical Center (MSMC) drawing from a population of over 70,000 inpatients and 800,000 outpatient visits annually. MSMC serves diverse local communiti...

phs000925 | dbGaP

Estonian Biobank, Estonian Genome Center, University of Tartu

PRJNA349216 | ENA

NHLBI TOPMed: Early-onset Atrial Fibrillation in the Estonian Biobank

PRJNA472128 | ENA

NHLBI TOPMed: Early-onset Atrial Fibrillation in the Estonian Biobank

PRJNA472129 | ENA

Historical Biobanks in Breast Cancer Metabolomics - Challenges and Opportunities

BACKGROUND: Metabolomic characterization of tumours can potentially improve prediction of cancer prognosis and treatment response. Here, we describe efforts to validate previous metabolomic findings using a historical cohort of breast cancer patients and discuss challenges with u...

2022-01-24 | MTBLS1355 | MetaboLights

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