Bioenergy - OmicsDI

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Sorghum bicolor (55)
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anaerobic digester metagenome (5)
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CHEBI ID

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CHEBI:4108 (1)
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Metabolite Name

Coniferaldehyde (1)
5-hydroxyconiferaldehyde (1)
4-methoxyresorcinol-1-O-glucoside (1)
2-methoxyhydroquinone (1)
B-sitosterol (1)
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3-O-caffeoyl-quinic acid (1)
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A-linolenic acid (1)
Glycerol-1/3-phosphate (1)
L-dihydroorotic acid (1)
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Putrescine (2TMS) (1)
Octadecenoic acid, 6-(Z)- (1TMS) (1)
Xylobiose, D- (1MEOX) (6TMS) BP2 (1)
Fructose-1-phosphate (1MEOX) (6TMS) MP (1)
Tryptamine (2TMS) (1)
Butanoic acid, 4-amino- (3TMS) (1)
Beta-Alanyl-lysine (6TMS) (1)

First Public Date

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Modelling Approach

Constraint-based model (6)

Lab affiliation

NREL (2)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (2)
1. Key Laboratory of Photoelectric Conversion and Utilization of Solar Energy, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China. 2. Shandong Energy Institute, Qingdao 266101, China. 3. Qingdao New Energy Shandong Laboratory, Qingdao 266101, China. (2)
National Bioenergy Center (1)
Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences (1)
Genetics Department, Luiz de Queiroz College of Agriculture, University of São Paulo (1)
Department of Life Science, College of Life Science, National Taiwan University, Taipei, Taiwan (1)
Biomic Team, Environmental Technologies Department, Irstea, France (1)
Joint BioEnergy Institute and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, 94720, USA (1)
Department of Biochemistry and Department of Bacteriology University of Wisconsin-Madison, Madison, WI 53706 Dept. of Energy Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53726 (1)
Genome Center of Wisconsin,Department of Chemistry, Department of Biomolecular Chemistry, and DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53706, USA Morgridge Institute for Research, Madison, WI 53706, USA (1)
Department of Geoscience, University of Calgary, Calgary Ab,Canada (1)
1. School of Biosciences, The University of Melbourne, Melbourne, VIC 3010, Australia 2. Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA (1)
Department of Chemistry, Michigan State University (1)
1. ARC Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Melbourne, VIC 3010, Australia 2. Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94702, USA (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
Nuffield Department of Medicine, University of Oxford, OX3 7FZ, U.K. (1)
Interdisciplinary Research Center on Biology and Chemistry, State Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China (1)

IsPrivate

False (7)

Model Flag

Non Kinetic (5)

Submitter Keywords

FROG (1)

Classification

fungi (68)
bacteria (25)
viruses (3)

Study type

Transcription profiling by array (16)
RNA-seq of coding RNA (8)
Comparative genomic hybridization by array (2)
Transcription profiling by tiling array (1)
Other (1)

Release Date

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2017 (206)
2014 (198)
2015 (159)
2013 (130)
2012 (93)
2011 (89)
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2026 (30)
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2008 (10)
2007 (1)

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Towards engineering ectomycorrhization into switchgrass bioenergy crops via a lectin receptor-like kinase

Soil-borne microbes can establish compatible relationships with host plants, providing a large variety of nutritive and protective compounds in exchange for photosynthesized sugars. However, the molecular mechanisms mediating the establishment of these beneficial relationships remain unclear. Our pr...

2021-08-11 | MTBLS2597 | MetaboLights

Modeling pollinator community response to contrasting bioenergy scenarios.

Not available

S-EPMC4217732 | biostudies-literature

Natural climate solutions versus bioenergy: Can carbon benefits of natural succession compete with bioenergy from short rotation coppice?

Not available

S-EPMC6852302 | biostudies-literature

Nodal Root Bud Development - Transcriptome Analysis

Bioenergy sorghum’s large and deep nodal root system and associated microbiome enables uptake of water and nutrients from and deposition of soil organic carbon into soil profiles, key contributors to the crop’s resilience and sustainability. The goal of this study was to increase our understanding o...

ORGANISM(S): Sorghum bicolor

2025-05-10 | E-MTAB-15090 | biostudies-arrayexpress

Microbiomes associated with bioenergy grasses

Microbiomes associated with bioenergy grasses Targeted loci environmental

PRJNA964469 | ENA

Consensus, uncertainties and challenges for perennial bioenergy crops and land use.

Not available

S-EPMC5815384 | biostudies-literature

Contrasting effects of bioenergy crops on biodiversity.

Not available

S-EPMC10516493 | biostudies-literature

Bird communities in future bioenergy landscapes of the Upper Midwest.