Biofuel - OmicsDI

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Unknown (2100)
Genomics (1263)
Transcriptomics (145)
Proteomics (75)
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Methylation profiling (1)

Organisms

Escherichia coli (19)
Saccharomyces cerevisiae (9)
Clostridium acetobutylicum ATCC 824 (7)
Zymomonas mobilis (6)
Caldicellulosiruptor saccharolyticus (5)
Chlamydomonas reinhardtii (5)
Arabidopsis thaliana (5)
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Panicum virgatum (5)
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Nannochloropsis oceanica (3)
Trichoderma reesei QM9414 (2)
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Arabidopsis (1)
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Methanobacteria (1)
Clostridium ljungdahlii DSM 13528 (1)
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Populus maximowiczii x Populus nigra (1)

Organisms

Panicum virgatum (148)
Acetivibrio thermocellus (112)
rhizosphere metagenome (95)
Yarrowia lipolytica (72)
Escherichia coli (25)
Corynebacterium glutamicum (18)
Zymomonas mobilis (12)
Candida tropicalis (11)
Clostridium beijerinckii (11)
Candida albicans (9)
Meyerozyma guilliermondii (9)
bioreactor metagenome (9)
Pichia kudriavzevii (8)
soil metagenome (8)
Thermoanaerobacterium saccharolyticum (7)
Clostridium saccharobutylicum (6)
pond metagenome (5)
Sorghum bicolor (5)
Hanseniaspora occidentalis (4)
Clostridium acetobutylicum ATCC 824 (4)
Hanseniaspora singularis (nom. inval.) (4)
Hanseniaspora pseudoguilliermondii (4)
Hanseniaspora guilliermondii (4)
Hanseniaspora clermontiae (4)
Hanseniaspora jakobsenii (4)
Hanseniaspora thailandica (nom. inval.) (4)
Hanseniaspora gamundiae (4)
Microchloropsis gaditana (4)
Lygus hesperus (4)
Hanseniaspora opuntiae (4)

Repository

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Tissue

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Disease

Not Available (1)
Disease free (1)

Technology Type

Mass Spectrometry (28)
Shotgun proteomics (18)
Mass spectrometry (6)
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Mass spectrometry assay (1)
All-ion fragmentation (1)
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Data-independent acquisition (1)
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Top-down proteomics (1)

Instrument Platform

GC-MS (9)
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GC MS (6)
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Flat panel airlift-loop reactor with a 1.7 L working volume (2)
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- (2)
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Publication Date

2014 (28)
2016 (25)
2015 (24)
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2012 (17)
2017 (16)
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2019 (11)
2011 (11)
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2025 (8)
2020 (7)
2022 (5)
2009 (5)
2026 (3)
2008 (3)

CHEBI ID

CHEBI:17306 (2)
CHEBI:17634 (2)
CHEBI:19324 (1)
CHEBI:17680 (1)
CHEBI:27569 (1)
CHEBI:62006 (1)
CHEBI:61993 (1)
CHEBI:28017 (1)
CHEBI:29042 (1)
CHEBI:16856 (1)
CHEBI:17665 (1)
CHEBI:24636 (1)
CHEBI:18367 (1)
CHEBI:16761 (1)
CHEBI:15422 (1)
CHEBI:26658 (1)
CHEBI:139282 (1)
CHEBI:86632 (1)
CHEBI:86635 (1)
CHEBI:149478 (1)
CHEBI:149477 (1)
CHEBI:189080 (1)
CHEBI:189079 (1)
CHEBI:32433 (1)
CHEBI:26250 (1)
CHEBI:189078 (1)
CHEBI:36946 (1)
CHEBI:24684 (1)
CHEBI:149479 (1)
CHEBI:2106 (1)

Metabolite Name

Linoleic acid (2)
Palmitic acid (2)
Sucrose (2)
[2H3]-beta-Ionone (1)
"Ethanol, 2-[2-(2-butoxyethoxy)ethoxy]-" (1)
"1,2-Di-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine" (1)
"Benzoic acid, 3-amino-" (1)
"Acetic acid, 2,2'-[oxybis(2,1-ethanediyloxy)]bis-" (1)
"N,N'-Diacetylchitobiose" (1)
PyroGlu-Arg-Arg (1)
Taurochenodeoxycholate / Taurodeoxycholic acid (1)
Oleic acid / trans-Vaccenic acid (1)
"N,N-Dimethylsphingosine" (1)
"Acetic acid, methoxy-, methyl ester" (1)
"1,3-Diaminopropane" (1)
N-Octadecanoyl-1-.beta.-galactosyl-sphing-4-enine (1)
"Adenine, N6-methyl" (1)
"Ethanol, 2-[2-(2-methoxyethoxy)ethoxy]-" (1)
Val-Arg-Arg (1)
"1,2-Benzenedicarboxylic acid" (1)
1-Hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-rac-glycerol) (1)
"Piperazine-N,N'-bis(2-hydroxypropanesulfonic acid)" (1)
"all cis-(6,9,12)-Linolenic acid" (1)
4-Morpholinopropanesulfonic acid (1)
C18-C16 Wax (1)
C18-C15 Wax (1)
C18-C14 Wax (1)
C18-C13 Wax (1)
C18-C12 Wax (1)
C18-C11 Wax (1)

First Public Date

2018 (251)
2020 (157)
2017 (149)
2014 (144)
2013 (142)
2019 (97)
2025 (66)
2021 (61)
2016 (61)
2024 (43)
2023 (24)
2022 (24)
2015 (18)
2026 (16)
2012 (1)

Modelling Approach

Constraint-based model (4)
Ordinary differential equation model (1)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (2)
Basic Sciences, College of Veterinary Medicine (1)
Beijing Key Lab of Bioprocess, National Energy R&D Center for Biorefinery, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, PR China (1)
Biomic Team, Environmental Technologies Department, Irstea, France (1)
College of Biological Engineering, Henan University of Technology, Zhengzhou, PR China (1)
College of Life Sciences (1)
Copenhagen Center for Glycomics (CCG) Department of Cellular and Molecular Medicine University of Copenhagen (1)
Department of Chemical and Biological Engineering, University of Sheffield, Mappin Street, Sheffield S1 3JD, United Kingdom (1)
Department of Ecology, Research Center for Hydrobiology, Jinan University, Guangzhou 510632, People’s Republic of China (1)
Department of Microbiology and Plant Biology, University of Oklahoma. U.S.A. (1)
Department of Plant Bioscience, Pusan National University, 1268-50 Samrangjin-ro, Samnangjin-eup, Miryang, 50463, Korea Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Korea. (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (1)
Genome Center of Wisconsin,Department of Chemistry, Department of Biomolecular Chemistry, and DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53706, USA Morgridge Institute for Research, Madison, WI 53706, USA (1)
Harvard Medical School, Boston, MA, USA (1)
ICAP Facility Université de Picardie Jules Verne (1)
ICGEB (1)
Key Laboratory of Genetics and Biotechnology, College of Life Science, Capital Normal University, XisanhuanBeilu No. 105, 100048 Beijing, P. R. of China. (1)
King Mongkut's University of Technology Thonburi (1)
Laboratory of Proteomics/LADETEC, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil Proteomics Unit, Institute of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil (1)
Laboratory of Synthetic Microbiology School of Chemical Engineering & Technology Tianjin University, Tianjin 300072, P. R. China (1)
Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA Department of Molecular Biology, Princeton University, Princeton, NJ, USA (1)
Radboud Proteomics Center, Translational Metabolic Laboratory, Department of Laboratory Medicine, Radboudumc (1)
Titular Professor Laboratory of Microbiology Andalusian Institute for Grape and Grapevine Research (CAIV) Marine and Environmental Sciences Faculty (CASEM) University of Cadiz (1)
USDA-ARS (1)
UW Madison (1)
University of Nottingham, School of Life Sciences (1)
Westlake university (1)

IsPrivate

False (7)

Model Flag

Non Kinetic (4)

Submitter Keywords

FROG (1)

Classification

fungi (102)
bacteria (89)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (48)
RNA-seq of coding RNA (28)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
RNA-seq of total RNA (1)

Release Date

2020 (180)
2017 (174)
2021 (171)
2022 (170)
2023 (162)
2018 (161)
2016 (159)
2019 (157)
2025 (146)
2014 (145)
2024 (123)
2015 (116)
2013 (95)
2012 (88)
2010 (48)
2011 (47)
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2009 (12)
2008 (8)
2004 (2)
2007 (1)
2006 (1)

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Growth-uncoupled propanediol production in a Thermoanaerobacterium thermosaccharolyticum strain engineered for high ethanol yield.

Not available

S-EPMC9918460 | biostudies-literature

Surrey Biofuel Facility High Quality MAGs

Surrey Biofuel Facility Metagenome

PRJNA1178125 | ENA

Surrey Biofuel Facility Liquid Digestate

Surrey Biofuel Facility Liquid Digestate Genome sequencing and assembly

PRJNA1175651 | ENA

Metagenomic analysis of the rhizosphere of three biofuel crops at the KBS intensive site

PRJEB35578 | ENA

Cellobiose dehydrogenase in biofuel cells.

Not available

S-EPMC7613715 | biostudies-literature

OxyR regulates the oxidative stress response in Zymomonas mobilis during oxic growth and anoxic biofuel fermentation

The bacterium Zymomonas mobilis is widely studied for its potential as an industrial biofuel producer. Anoxic fermentation by Z. mobilis in lignocellulosic hydrolysate can generate bioethanol from renewable plant biomass. In this study, we deleted a gene from the Z. mobilis genome encoding a homolog...

ORGANISM(S): Zymomonas mobilis

2026-07-31 | GSE332662 | GEO

Streamflow impacts of biofuel policy-driven landscape change.

Not available

S-EPMC4188602 | biostudies-literature

Cell-free translation of biofuel enzymes.

Not available

S-EPMC5820533 | biostudies-literature

RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger.

Background: Saprobic fungi are the predominant industrial sources of Carbohydrate Active enZymes (CAZymes) used for the saccharification of lignocellulose during the production of second generation biofuels. The production of more effective enzyme cocktails is a key objective for efficient biofuel p...

ORGANISM(S): Aspergillus niger

2015-04-13 | E-GEOD-62284 | biostudies-arrayexpress

ZYF-N2O biofuel

PRJNA504741 | ENA

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