Biomedical - OmicsDI

Show results for

Unknown (237984)
Genomics (7190)
Proteomics (4949)
Transcriptomics (2759)
Models (175)
Metabolomics (159)
Genomic (52)
Other (43)
Clinical (9)
Methylation profiling (9)
Multiomics (9)

Organisms

Homo sapiens (1114)
Mus musculus (911)
Rattus norvegicus (204)
Saccharomyces cerevisiae (117)
Sus scrofa (51)
Danio rerio (49)
Drosophila melanogaster (47)
Arabidopsis thaliana (43)
Bos taurus (42)
Gallus gallus (31)
Macaca mulatta (29)
Rhizobium leguminosarum (26)
Escherichia coli (18)
Aedes aegypti (16)
Canis lupus familiaris (15)
Mammalia (8)
Oryctolagus cuniculus (8)
Ovis aries (8)
Escherichia coli K-12 (5)
cellular organisms (3)
Rhodotorula toruloides (2)
Mus sp. (2)
Rattus (2)
Cavia porcellus (2)
Acinetobacter baumannii (1)
Rodentia (1)
Chordata (1)
Euarchontoglires (1)
Lactococcus lactis (1)
Amphibia (1)

Organisms

Homo sapiens (2082)
Mus musculus (1972)
Rattus norvegicus (157)
Drosophila melanogaster (119)
Danio rerio (61)
Sus scrofa (53)
Saccharomyces cerevisiae (48)
Caenorhabditis elegans (38)
Schizosaccharomyces pombe (31)
Arabidopsis thaliana (31)
Gallus gallus (27)
Bos taurus (25)
Macaca mulatta (24)
human gut metagenome (24)
Escherichia coli (22)
Callithrix jacchus (20)
Canis lupus familiaris (20)
Schmidtea mediterranea (18)
mouse gut metagenome (18)
Lodderomyces parapsilosis (16)
Macaca fascicularis (16)
Plasmodium falciparum (14)
unidentified (13)
Pseudomonas aeruginosa (12)
synthetic construct (11)
Xenopus laevis (10)
Pseudomonas aeruginosa PAO1 (10)
Staphylococcus aureus (10)
Papio hamadryas (9)
Ovis aries (9)

Repository

ENA (6890)
pride (4698)
biostudies-arrayexpress (2621)
geo (335)
BioModels (173)
EGA (152)
MetaboLights (146)
MassIVE (107)
iProX (68)
dbGaP (52)
jPOST (38)
PAXDB (24)
GPMDB (14)
GNPS (12)
EVA (5)
PanoramaPublic (5)
Cell Collective (2)
PeptideAtlas (2)
MetabolomicsWorkbench (1)

Tissue

Cell culture (1025)
Epithelial cell (418)
Brain (319)
Blood plasma (182)
Permanent cell line cell (175)
Liver (151)
Lung (141)
Blood (139)
Fibroblast (126)
Colon (121)
Blood serum (114)
Heart (104)
Blood cell (101)
T cell (90)
Hepatocyte (79)
Kidney (78)
B cell (74)
Cell suspension culture (68)
Macrophage (68)
Skin (65)
Urine (61)
Stem cell (58)
Primary cell (53)
HeLa cell (49)
Cerebrospinal fluid (47)
Bone marrow (42)
Spleen (42)
Early embryonic cell (41)
Bladder (1)
Eye (1)

Disease

Colon cancer (151)
Alzheimer's disease (75)
Parkinson's disease (39)
Lymphoma (38)
Neuroblastoma (21)
Normal (20)
Malaria (18)
Crohn's disease (5)
Leukemia (3)
Wilms tumour (3)
Lymphoid leukemia (2)
Fatty liver disease (2)
Apparently healthy (2)
Hyperglycaemic (2)
Chronic myeloid leukemia (2)
Brugada syndrome (1)
Bacterial infectious disease (1)
Cancer (1)
Heart disease (1)
Toxicity (1)
Benign nevi (1)
Diabetes mellitus type 1 (1)
Pseudomonas aeruginosa rsmA mutant infected (1)
Ulcerative colitis (1)
Not applicable (1)
Colon cancer Dukes C (1)
Wolbachia infected (1)
Insulin resistance (1)
TAC operated 1 hour after surgery (1)
Dystrophic (1)

Technology Type

Mass Spectrometry (4698)
Shotgun proteomics (3343)
Affinity purification coupled with mass spectrometry proteomics (530)
Bottom-up proteomics (351)
Gel-based experiment (335)
SWATH MS (172)
Data-dependent acquisition (152)
Top-down proteomics (113)
Mass spectrometry (103)
Data-independent acquisition (66)
SRM/MRM (63)
Chemical cross-linking coupled with mass spectrometry proteomics (39)
Mass spectrometry assay (32)
HDMSE (29)
MSE (24)
All-ion fragmentation (23)
NMR spectroscopy (14)
Illumina HiSeq 2000 (2)
NextSeq 500 (ILLUMINA), Illumina HiSeq 2500 (ILLUMINA) (1)
Illumina_OncoArray-500K Bead Array (1)
OXFORD_NANOPORE, MinION (1)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA, NextSeq 500 (1)
ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina MiSeq, Illumina HiSeq 2500 (1)
454 GS FLX Titanium, Illumina HiSeq 2000 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Affymetrix_250K(Nsp) - gtype, Illumina HiSeq 2000, Agilent Human Whole Genome 4x44k v2 - Feature Extraction, Illumina Infinium HumanMethylation 450K - GenomeStudio (1)
Illumina HiSeq 2500 (1)
NMR (1)

Instrument Platform

Illumina NovaSeq 6000 (76)
Illumina HiSeq 2500 (61)
Illumina HiSeq 4000 (53)
Illumina HiSeq 2000 (45)
NextSeq 500 (35)
NextSeq 2000 (13)
Illumina NovaSeq X (10)
N/A (10)
Illumina Genome Analyzer II (9)
Illumina MiSeq (8)
NextSeq 550 (6)
Scanning hardware (5)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (4)
10X Genomics reagent kit (4)
Affymetrix GeneChip Scanner 3000 7G (4)
GenePix 4000B [Axon Instruments] (4)
MinION (4)
HiSeq X Ten (4)
GeneChip Scanner 3000 [Affymetrix] (3)
G2565BA DNA microarray scanner [Agilent] (3)
Axon GenePix 4000B scanning hardware (3)
Bio-Rad T100 Thermocycler (2)
10X Chromium Nuclei Isolation Kit (2)
Tabletop microfuge, Nanodrop (2)
Tabletop centrifuge (2)
Agilent Microarray Scanner G2505C (2)
Agilent Hybridisation Oven G2545A (2)
Feature Extraction Version: 7.0,10.5 (2)
None (2)
ScanArray 5000 [PerkinElmer] (2)

Publication Date

2018 (867)
2019 (699)
2016 (627)
2015 (619)
2017 (596)
2022 (505)
2014 (481)
2020 (456)
2021 (372)
2025 (356)
2024 (348)
2013 (328)
2023 (315)
2010 (301)
2012 (271)
2011 (256)
2026 (209)
2008 (192)
2009 (146)
2005 (117)
2007 (84)
2006 (41)
2004 (10)

UNIPROT ID/AC

Q9BQG2 (66)
B3KXN9 (66)
Q53HM1 (66)
Q86SK9 (66)
E9KL42 (66)
Q3I5F7 (66)
P33897 (66)
Q99884 (66)
A8MU28 (66)
P35219 (66)
Q5FC00 (66)
Q15274 (66)
Q9NX14 (66)
Q9Y345 (66)
Q86YT5 (66)
Q53H96 (66)
Q9NWU1 (66)
Q96C36 (66)
Q9NRX3 (66)
O75610 (66)
Q6UWQ5 (66)
Q96KJ9 (66)
Q9UEF7 (66)
Q8TF08 (66)
Q7Z4L0 (66)
Q7GXZ8 (66)
Q7GXY8 (66)
Q9H0N5 (66)
Q6YFQ2 (66)
Q6FGA0 (66)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:16761 (87)
CHEBI:16643 (83)
CHEBI:58121 (72)
CHEBI:57737 (72)
CHEBI:57642 (72)
CHEBI:15379 (72)
CHEBI:15361 (72)
CHEBI:15740 (71)
CHEBI:30089 (71)
CHEBI:15414 (71)
CHEBI:16526 (71)
CHEBI:47942 (70)
CHEBI:17137 (70)
CHEBI:58367 (70)
CHEBI:58369 (70)
CHEBI:57454 (70)
CHEBI:57451 (70)
CHEBI:57392 (70)
CHEBI:57455 (70)
CHEBI:57328 (70)
CHEBI:60471 (70)
CHEBI:58297 (70)
CHEBI:61404 (70)
CHEBI:57667 (70)
CHEBI:57597 (70)
CHEBI:57502 (70)
CHEBI:58115 (70)
CHEBI:37563 (70)
CHEBI:58593 (70)
CHEBI:246422 (70)

Metabolite Name

Creatine (25)
Taurine (23)
Inosine (21)
Adenosine (20)
Hypoxanthine (20)
Choline (18)
L-Tyrosine (18)
Thymine (17)
Adenine (17)
Uridine (17)
Creatinine (17)
Glycine (16)
L-Histidine (16)
Citric acid (16)
Xanthine (16)
Guanosine (16)
L-Phenylalanine (16)
Uracil (15)
Betaine (15)
Palmitic acid (15)
Tryptophan (15)
L-Isoleucine (15)
Niacinamide (14)
L-Lysine (14)
L-Proline (14)
Pyridoxine (14)
Cytosine (14)
Riboflavin (14)
L-Serine (14)
Valine (13)

First Public Date

2014 (859)
2024 (698)
2025 (696)
2023 (664)
2026 (620)
2022 (556)
2021 (538)
2019 (471)
2020 (448)
2013 (319)
2018 (311)
2017 (304)
2015 (228)
2016 (174)
2012 (2)
2011 (2)

Modelling Approach

Ordinary differential equation model (79)
Constraint-based model (16)
Physiologically based pharmacokinetic model (4)
Computational model (2)
Metabolic network (2)
Regression method (1)
Finite element spatial model (1)
Machine learning (1)
Mathematical model (1)
Other (1)
Logical model (1)

Study status

Completed (3)
Not yet recruiting (2)
Not provided (2)
Recruiting (2)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (87)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (28)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (23)
Vanderbilt University (22)
Wellcome Trust Sanger Institute (16)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (15)
University of Southampton (13)
Cellzome (12)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (11)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (11)
Professor of Genomic Evolution, School of Medicine, Conway Institute of Biomolecular and Biomedical Research, University College Dublin Belfield Dublin 4 (11)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (11)
Department of Biomedical Sciences, University of Padova, Italy (10)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (10)
The University of Sydney (10)
University of Texas Medical Branch (10)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (9)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (9)
CRUK Beatson Institute (8)
Department of Biochemistry and Biomedical Sciences McMaster University (8)
Moffitt Cancer Center (8)
Paris-Saclay Institute of Neuroscience, Team Melki, CNRS, Gif-sur-Yvette, France (8)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (7)
EDyP (7)
J. Craig Venter Institute, Rockville, MD 20850 (7)
Max Planck Institute of Biochemistry (7)
PROBE (7)
Pacific Northwest National Laboratory (7)
University of Copenhagen Department of Biomedical Sciences Blegdamsvej 3B København N, DK-2200 (7)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (6)