Biophysics - OmicsDI

Show results for

Unknown (56759)
Genomics (1576)
Proteomics (607)
Models (46)
Transcriptomics (31)
Metabolomics (19)
Genomic (2)
Methylation profiling (1)
Other (1)

Organisms

Allexis (545)
Arabidopsis thaliana (545)
Homo sapiens (545)
Listeria monocytogenes (545)
Mus musculus (545)
Rattus norvegicus (545)
Saccharomyces cerevisiae (545)
Schizosaccharomyces pombe (545)
Callinectes sapidus (544)
Danio rerio (544)
Drosophila (544)
Drosophila melanogaster (544)
Ensifer adhaerens (544)
Homo sapiens (63)
Mus musculus (20)
Saccharomyces cerevisiae (7)
Escherichia coli (5)
Drosophila melanogaster (5)
Solanum lycopersicum (3)
Embryophyta (2)
Oryctolagus cuniculus (2)
cellular organisms (2)
Rattus (2)
Cavia porcellus (2)
Papio hamadryas (2)
Danio rerio (1)
Rattus norvegicus (1)
Caenorhabditis elegans (1)
Mus (1)
Oryza sativa (1)

Organisms

Homo sapiens (449)
Mus musculus (352)
Arabidopsis thaliana (59)
Staphylococcus aureus (51)
Saccharomyces cerevisiae (32)
Rattus norvegicus (22)
Pseudomonas aeruginosa (20)
Drosophila melanogaster (16)
Schizosaccharomyces pombe (14)
Caenorhabditis elegans (13)
Acholeplasma laidlawii (11)
Viruses (9)
Escherichia coli (9)
Candida albicans (6)
Danio rerio (6)
Gallus gallus (6)
Macaca mulatta (5)
Mycobacterium tuberculosis H37Rv (4)
Lacticaseibacillus paracasei (4)
Solanum lycopersicum (4)
Mycobacterium tuberculosis (4)
Silene colpophylla (3)
Carnobacterium maltaromaticum (3)
Aspergillus nidulans (3)
Rumex acetosa (3)
Cryptococcus neoformans (3)
Aspergillus fumigatus (3)
Nakaseomyces glabratus (3)
Oryzias latipes (3)
Lactococcus lactis (3)

Repository

ENA (1571)
pride (545)
BioModels (45)
iProX (41)
biostudies-arrayexpress (22)
MassIVE (20)
MetaboLights (16)
geo (15)
GNPS (3)
dbGaP (2)
GPMDB (1)
PanoramaPublic (1)
PMR (1)

Tissue

Cell culture (139)
Epithelial cell (46)
Brain (35)
Heart (22)
Permanent cell line cell (19)
Liver (16)
Fibroblast (14)
Blood plasma (11)
Primary cell (11)
Embryonic stem cell (10)
Hepatocyte (10)
Lung (10)
Venom duct (9)
HeLa cell (8)
Kidney (8)
T cell (8)
Blood (7)
Plant cell (7)
Blood cell (6)
Colon (6)
Embryo (6)
Retina (6)
JURKAT cell (5)
Macrophage (5)
Skeletal muscle (5)
Spleen (5)
Stem cell (5)
Blood serum (4)
Cell suspension culture (4)
Early embryonic cell (4)

Disease

Colon cancer (13)
Breast cancer (11)
Disease free (11)
Acute leukemia (8)
Lung cancer (7)
Cervix carcinoma (6)
Type 2 diabetes mellitus (5)
Melanoma (4)
Retinal degeneration (4)
Alzheimer's disease (3)
Human immunodeficiency virus infectious disease (3)
Neck carcinoma (3)
Parkinson's disease (3)
Rheumatoid arthritis (3)
Malignant neoplasm of ovary (2)
Mitochondrial metabolism disease (2)
Multiple myeloma (2)
Neuroblastoma (2)
Pancreatic ductal adenocarcinoma (2)
Severe acute respiratory syndrome (2)
Viral infectious disease (2)
Andersen-Tawil syndrome (1)
Non-small cell lung carcinoma (1)
Diabetes mellitus (1)
Not Available (1)
Alzheimer's disease 1 (1)
Aortic valve disease (1)
Arthritis (1)
Brain cancer (1)
COVID-19 (1)

Technology Type

Mass Spectrometry (545)
Shotgun proteomics (285)
Bottom-up proteomics (90)
Affinity purification coupled with mass spectrometry proteomics (83)
Data-dependent acquisition (68)
Gel-based experiment (43)
Top-down proteomics (28)
Chemical cross-linking coupled with mass spectrometry proteomics (24)
Data-independent acquisition (17)
SWATH MS (12)
SRM/MRM (11)
Mass spectrometry (10)
Mass spectrometry assay (5)
HDMSE (4)
MSE (4)
All-ion fragmentation (2)
DiaPASEF (2)
NMR spectroscopy (1)
Affinity proteomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Q Exactive (13)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (4)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (4)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - positive - reverse-phase (3)
Orbitrap Astral (2)
Orbitrap Exploris 240 (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - negative - reverse-phase (2)
BGISEQ-500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
Synapt XS (1)
Instrument (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
TimsTOF Pro 2 (1)
ZenoTOF 7600 (1)
LCT Premier XE (Waters) (1)
6530 Q-TOF LC/MS (Agilent) (1)
Flow injection analysis MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Bruker micrOTOF-Q-II (1)

Publication Date

2025 (110)
2024 (89)
2023 (76)
2021 (72)
2022 (71)
2020 (51)
2026 (50)
2018 (45)
2019 (44)
2005 (20)
2016 (14)
2015 (12)
2017 (12)
2014 (9)
2007 (4)
2013 (3)
2011 (2)
2010 (2)
2008 (1)

UNIPROT ID/AC

P05067 (3)
Q9Y6I3 (2)
O14781 (2)
Q15466 (2)
P22681 (2)
Q8NEB9 (2)
O15357 (2)
O00459 (2)
P29992 (2)
Q13115 (2)
P40763 (2)
P31751 (2)
P28562 (2)
P01112 (2)
P01133 (2)
P00533 (2)
P60484 (2)
O15530 (2)
Q16828 (2)
P04049 (2)
Q02750 (2)
P28482 (2)
Q07889 (2)
P98077 (2)
P20936 (2)
P62993 (2)
O43526 (1)
O88944 (1)
O25420 (1)
Q48271 (1)

CHEBI ID

CHEBI:16919 (6)
CHEBI:15996 (4)
CHEBI:17552 (4)
CHEBI:15422 (4)
CHEBI:16761 (4)
CHEBI:29108 (3)
CHEBI:16905 (3)
CHEBI:16908 (3)
CHEBI:15846 (3)
CHEBI:15355 (2)
CHEBI:16595 (2)
CHEBI:18348 (2)
CHEBI:16541 (2)
CHEBI:15379 (2)
CHEBI:14314 (2)
CHEBI:15361 (2)
CHEBI:17234 (2)
CHEBI:33699 (2)
CHEBI:43000 (1)
CHEBI:30111 (1)
CHEBI:38322 (1)
CHEBI:38309 (1)
CHEBI:5235 (1)
CHEBI:28358 (1)
CHEBI:37328 (1)
CHEBI:25107 (1)
CHEBI:17287 (1)
CHEBI:29103 (1)
CHEBI:43474 (1)
CHEBI:16810 (1)

Metabolite Name

Betaine (5)
PIPES (4)
CHES (4)
HEPES (4)
Proline betaine (4)
Creatinine (4)
Creatine (4)
Trimethylamine N-oxide (4)
Pyrantel (3)
MES (3)
Dimethylglycine (3)
Trigonelline (3)
Pyroglutamic acid (3)
L-Proline (3)
3-Hydroxykynurenine (3)
L-Arginine (3)
L-Threonine (3)
Acetylcarnitine (3)
Pantothenic acid (3)
Nicotinamide (3)
Methionine sulfoxide (3)
Choline (3)
Taurine (3)
Tyrosine (3)
Adenosine (3)
Cytosine (3)
Proline (3)
L-Serine (3)
Cytidine (3)
Xanthine (3)

First Public Date

2025 (176)
2024 (145)
2023 (143)
2021 (140)
2014 (136)
2020 (133)
2019 (117)
2018 (109)
2017 (106)
2022 (100)
2026 (99)
2016 (73)
2015 (54)
2013 (38)
2010 (2)

Modelling Approach

Ordinary differential equation model (41)
Differential equation model (2)
Constraint-based model (2)

Lab affiliation

Institute of Biophysics, Chinese Academy of Sciences (12)
Mass Spectrometry Laboratory, Institute of Biochemistry and Biophysics PAS (8)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (6)
Mass Spectrometry Laboratory, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland (6)
Department of Physiology and Biophysics, University of Illinois at Chicago (5)
MPIs for Biophysics and Brain Research (5)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (4)
Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania (4)
Institute of Molecular Biology and Biophysics, Department of Biology, ETH Zurich, Zurich, Switzerland Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland (4)
MBU,IISc. (4)
Yale University, Department of Molecular Biophysics & Biochemistry (4)
Center for Translational Vision Research, Department of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA, 92697, USA; Department of Physiology and Biophysics, Department of Chemistry, Department of Molecular Biology and Biochemistry; University of California, Irvine, Irvine, CA, 92697, USA (3)
Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institute, Stockholm 17177, Sweden (3)
Department of Biochemistry and Biophysics, University of Pennsylvania (3)
Department of Comparative Biochemistry and Bioanalytics Faculty of Biochemistry, Biophysics and Biotechnology Jagiellonian University in Krakow (3)
Department of Medical Biochemistry and Biophysics, Karolinska Institute, Stockholm, Sweden (3)
Department of Physical Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland (3)
Division of Physiological Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-17 177 Stockholm, Sweden (3)
Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (3)
MPIs for Brain Research and Biophysics (3)
Max Planck Institute for Brain Research Max Planck Institute of Biophysics (3)
NovAliX, Department of Biophysics, 16 Rue d’Ankara, 67000, Strasbourg, France; orcid.org/0000-0001-6229-4524 (3)
State Key Laboratory of Genetic Engineering, Department of Biochemistry and Biophysics, School of Life Sciences, Fudan University, Shanghai 200438, China (3)
Yale University Department of Molecular Biophysics and Biochemistry (3)
Assistant Professor, Chemistry and Biochemistry, Biological Chemistry Member, Biochemistry, Biophysics & Structural Biology GPB Home Area (lab head) (2)
Beijing Key Laboratory of Protein Posttranslational Modifications and Cell Function, Department of Biochemistry and Biophysics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China. (2)
Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet SE 17177 Stockholm, Sweden. Department of Pharmacological & Technological Chemistry, I.M. Sechenov First Moscow State Medical University, Moscow, 119146, Russia. (2)
Columbia University, Dept. Biochemistry/Mol. Biophysics (2)
Department of Biochemistry Biophysics and Structural Biology, Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, St. Louis, Missouri, United States (2)
Department of Biochemistry and Biophysics, RNA Discovery Center, and Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill (2)

IsPrivate

False (45)

Model Flag

Non Miriam (3)
Non Kinetic (1)

Submitter Keywords

Immuno-oncology (2)
Manuscript Accepted (1)

Classification

bacteria (99)
fungi (27)
viruses (12)
protozoa (2)
helminths (1)

Modification

2x(15)N labeled L-lysine (3)
4x(15)N labeled L-arginine (3)
15.994915 (1)
57.021464 (1)
N6 (1)

Study type

Transcription profiling by array (16)
RNA-seq of coding RNA (3)
Cell line - High-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (4600)
2021 (4531)
2023 (4219)
2025 (4021)
2020 (3964)
2024 (3655)
2019 (3415)
2018 (3316)
2016 (3182)
2017 (3134)
2015 (2998)
2014 (2673)
2013 (1987)
2012 (1845)
2011 (1715)
2010 (1475)
2009 (1283)
2008 (1186)
2007 (778)
2006 (548)
2026 (541)
2005 (430)
2004 (314)
2003 (264)
2002 (182)
2001 (165)
2000 (123)
1999 (101)
1998 (76)
1997 (42)

Previous page
1 / 5905
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 5905
Next page

Sort by:

Relevance

Page size

Biophysics in the Czech Republic: 70th anniversary of the institute of biophysics.

Not available

S-EPMC12678626 | biostudies-literature

Interaction standards for biophysics: anti-lysozyme nanobodies.

Not available

S-EPMC8189969 | biostudies-literature

Biophysics at Waseda University.

Not available

S-EPMC7242523 | biostudies-literature

Early integration of the individual student in academic activities: a novel classroom concept for graduate education in molecular biophysics and structural biology.

Not available

S-EPMC4134111 | biostudies-literature

Biophysics of protein evolution and evolutionary protein biophysics.

Not available

S-EPMC4191086 | biostudies-literature

Biophysics of Chromatin Remodeling.

Not available

S-EPMC8428145 | biostudies-literature

Dissecting the RAD51–BRC4 Interaction Landscape through Integrative Molecular Simulations and Experimental Biophysics

The interaction between the RAD51 and BRCA2 proteins is central to homologous recombination (HR), a crucial pathway ensuring high-fidelity DNA repair. Recruitment of RAD51 involves eight highly conserved regions on BRCA2, named BRC repeats. The interaction between the fourth BRC repeat (BRC4) and th...

ORGANISM(S): Homo sapiens (Human) Escherichia coli

2025-10-29 | PXD060867 | Pride

Biophysics of Notch Signaling.

Not available

S-EPMC8105286 | biostudies-literature

Computational biophysics and structural biology of proteins-a Special Issue in honor of Prof. Haruki Nakamura's 70th birthday.

Not available

S-EPMC9809522 | biostudies-literature

Look Beyond Plasma Membrane Biophysics: Revealing Considerable Variability of the Dipole Potential Between Plasma and Organelle Membranes of Living Cells.

Not available

S-EPMC11816637 | biostudies-literature

Previous page
1 / 5905
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 5905
Next page

Sort by:

Relevance

Page size

59042 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

IsPrivate

Model Flag

Submitter Keywords

Classification

Modification

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets