Biopolymer - OmicsDI

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Unknown (1681)
Transcriptomics (1018)
Genomics (146)
Proteomics (62)
Other (3)
Metabolomics (3)
Models (1)

Organisms

Homo sapiens (351)
Mus musculus (255)
Arabidopsis thaliana (40)
Drosophila melanogaster (39)
Saccharomyces cerevisiae (29)
Danio rerio (24)
Caenorhabditis elegans (22)
Rattus norvegicus (14)
Zea mays (10)
Sus scrofa (10)
Glycine max (9)
Gallus gallus (9)
Bos taurus (8)
synthetic construct (8)
Oryza sativa (7)
Oryza sativa Japonica Group (6)
Bombyx mori (5)
Schizosaccharomyces pombe (5)
Aspergillus niger (5)
Escherichia coli (5)
Medicago truncatula (4)
Tetrahymena thermophila (3)
Capra hircus (3)
Marmota monax (3)
Streptococcus thermophilus (3)
Macaca mulatta (3)
Neurospora crassa (3)
Brassica napus (3)
Staphylococcus aureus (3)
Streptococcus pneumoniae (3)

Organisms

Arabidopsis thaliana (2)
soil metagenome (2)
Mus musculus (2)
Homo sapiens (2)
Gambierdiscus australes (1)
Pleurotus ostreatus PC15 (1)
Talaromyces adpressus (1)
gamma proteobacterium SCGC AAA240-I17 (1)
Verrucomicrobia bacterium SCGC AAA300-O17 (1)
alpha proteobacterium SCGC AAA240-E13 (1)
Verrucomicrobia bacterium SCGC AAA300-K03 (1)
gamma proteobacterium SCGC AAA008-P15 (1)
alpha proteobacterium SCGC AAA300-J04 (1)
alpha proteobacterium SCGC AAA536-B06 (1)
alpha proteobacterium SCGC AAA300-J16 (1)
Pseudomonas corrugata CFBP 5454 (1)
alpha proteobacterium SCGC AAA288-E13 (1)
Streptomyces tsukubensis NRRL18488 (1)
Beijerinckia indica (1)
Sphingomonas sanxanigenens DSM 19645 = NX02 (1)
Alteromonas pelagimontana (1)
Sitophilus oryzae (1)
Komagataeibacter xylinus (1)
Azotobacter vinelandii (1)
Pseudomonas sp. Emmai (1)
Halomonas sp. LS-001 (1)
Curvularia clavata (1)
Zobellella denitrificans (1)
Metabacillus sp. (1)
Roseateles sp. E2 (1)

Repository

biostudies-arrayexpress (1056)
ENA (94)
jPOST (32)
pride (18)
geo (17)
MassIVE (11)
MetaboLights (3)
BioModels (1)
PanoramaPublic (1)

Tissue

Follicular fluid (3)
Cell culture (2)
Callus (1)
Kernel (1)
Mesenchymal stem cell of adipose (1)
Tibia (1)

Disease

Wounds and Injuries (2)
Androgen-dependent prostate cancer (1)
Schizophrenia (1)
Celiac disease (1)
Disease free (1)

Technology Type

Mass Spectrometry (18)
Shotgun proteomics (9)
Bottom-up proteomics (8)
Data-dependent acquisition (7)
Mass spectrometry (3)
SWATH MS (3)
SRM/MRM (2)
Gel-based experiment (1)
HDMSE (1)
Metaproteomics (1)

Instrument Platform

NextSeq 500 (14)
Illumina NovaSeq 6000 (13)
Illumina HiSeq 2000 (12)
NextSeq 550 (4)
Illumina HiSeq 2500 (4)
DNBSEQ-G400 (3)
Illumina HiSeq 3000 (3)
Orbitrap Fusion Lumos (3)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina Genome Analyzer II (2)
Illumina HiSeq 4000 (2)
MaXis (2)
Liquid Chromatography MS - positive - reverse phase (2)
Eppendorf EpMotion 5073m pipetting robot (1)
BD FACSMelody (1)
10x Genomics Chromium (1)
Sony SH800 (1)
Not applicable (1)
Sequel (1)
AB SOLiD System 3.0 (1)
GenePix 4000B [Axon Instruments] (1)
Illumina iSeq 100 (1)
Illumina HiSeq 1000 (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Q Exactive (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Gas Chromatography MS - (1)

Publication Date

2015 (278)
2014 (170)
2013 (150)
2016 (118)
2012 (106)
2010 (82)
2011 (75)
2022 (33)
2009 (26)
2021 (23)
2008 (17)
2025 (10)
2007 (8)
2026 (8)
2019 (7)
2020 (6)
2017 (5)
2024 (5)
2018 (4)
2023 (3)
2006 (2)
2005 (2)
2003 (1)

CHEBI ID

CHEBI:16765 (2)
CHEBI:18186 (2)
CHEBI:27897 (2)
CHEBI:9188 (1)
CHEBI:8824 (1)
CHEBI:29081 (1)
CHEBI:192788 (1)
CHEBI:192787 (1)
CHEBI:192786 (1)
CHEBI:192785 (1)
CHEBI:192784 (1)
CHEBI:192783 (1)
CHEBI:192782 (1)
CHEBI:81299 (1)
CHEBI:166732 (1)
CHEBI:166731 (1)
CHEBI:183108 (1)
CHEBI:178065 (1)
CHEBI:139133 (1)
CHEBI:41131 (1)
CHEBI:166734 (1)
CHEBI:81256 (1)
CHEBI:139131 (1)
CHEBI:17574 (1)
CHEBI:81240 (1)
CHEBI:52023 (1)
CHEBI:45133 (1)
CHEBI:37070 (1)
CHEBI:27407 (1)
CHEBI:16312 (1)

Metabolite Name

Pos_1001 (1)
Biochanin A_ internal standard (1)
IAA-valine_ IAA-Val_ Indole-3-acetyl-valine (1)
Solanine IS fragment m_z 560.393 (1)
Alpha-Solanine_ in-source fragment _- Hexose_ (1)
Solanine (1)
Alpha-Solanine_ in-source fragment _- Fucose_ (1)
Alpha-Solanine_ in-source fragment (1)
Scoparone_ 6_7 Dimethoxycoumarin_ 6_7-Dimethylesculetin (1)
Rhapontin_ Rhaponticin_ Ponticin_ Rhaponiticin_ 4_-Methoxy-3_3__5-stilbenetriol-3-glucoside_ in-source fragment -glc (1)
Rutin _Quercetin _ Hex _ Fuc_ RT 4.61 m_z 611.159 (1)
Kaempferol IS fragment 287.055 RT 4.20 (1)
Riboflavin_ Vitamin B2 (1)
Feruloyl agmatine trans (1)
Tryptamine _-NH2_ (1)
Tyramine_ in-source fragment _-NH2__ peak 1 (1)
L-Tyrosine_ peak 2_ -NH2 (1)
Adenosine_ peak 2 (1)
Trigonelline_ N-Methylnicotinate (1)
Indole-3-carboxyaldehyde (1)
Desaminotyrosine (1)
Citric acid (1)
Kinetin (1)
Tyrosine (1)
Tryptophan (1)
L-Leucine (1)
L-Phenylalanine (1)

IsPrivate

False (1)

First Public Date

2013 (20)
2026 (12)
2025 (10)
2020 (9)
2024 (8)
2017 (7)
2023 (6)
2021 (6)
2019 (5)
2018 (3)
2015 (3)
2014 (3)
2016 (1)
2012 (1)

Classification

bacteria (2)
fungi (1)

Modelling Approach

Constraint-based model (1)

Study type

RNA-seq of coding RNA (496)
RNA-seq of non coding RNA (193)
Transcription profiling by array (152)
Other (71)
ChIP-seq (36)
Comparative genomic hybridization by array (22)
Unknown experiment type (13)
DNA-seq (11)
Transcription profiling by SAGE (8)
Methylation profiling by array (7)
RNA-seq of coding RNA from single cells (7)
Genotyping by array (5)
MicroRNA profiling by array (5)
Methylation profiling by high throughput sequencing (5)
ChIP-chip by tiling array (4)
RNA-seq of total RNA (4)
Animal - Single-cell sequencing (2)
Human - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
Transcription profiling by RT-PCR (2)
ATAC-seq (2)
Cell line - Single-cell sequencing (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
MicroRNA profiling by high throughput sequencing (1)
Bisulfite-seq (1)
Genotyping by high throughput sequencing (1)

Release Date

2015 (318)
2022 (230)
2023 (229)
2025 (214)
2014 (207)
2021 (181)
2013 (178)
2024 (167)
2020 (148)
2016 (136)
2012 (122)
2019 (118)
2018 (101)
2011 (92)
2010 (91)
2017 (63)
2009 (38)
2026 (36)
2008 (29)
2007 (14)
2006 (10)
2005 (4)
2003 (2)
2002 (2)
2001 (2)
1999 (2)
2004 (1)
2000 (1)
1998 (1)

Lab affiliation

Laboratory of Biopolymer Structure, Intercollegiate Faculty of Biotechnology UG-MUG, University of Gdansk, Gdansk, Poland (3)
Department of Biotechnology, TU Delft, The Netherlands (1)
Department of Chemistry, CICECO – Aveiro Institute of Materials, University of Aveiro Lab: COMPASS Research Group (1)
Department of Microbial Proteomics, University of Greifswald, Greifswald, Germany (1)
Institute of Human Nutrition and Food Science, Department of Metabolomics, University of Kiel, Germany Max Planck Institute for Marine Microbiology, Bremen, Germany (lab head) (1)
Laboratoire d’Anthropologie Moléculaire et Imagerie de Synthèse (AMIS), Université de Toulouse, CNRS, UPS, Toulouse, France (1)
Laboratoire d’Anthropologie Moléculaire et Imagerie de Synthèse (AMIS), Université de Toulouse, CNRS, UPS, Toulouse,France (1)
National Renewable Energy Laboratory, Golden (CO), USA (1)
Protein Engineering and Proteomics Group, Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (1)
Proteomics Department, Institute of Cellular Biology and Pathology "N. Simionescu", Romania (1)
Proteomics and Metabolomics Facility, University of Nebraska- Lincoln (1)
Research Group: Food Biopolymer Chemistry, Leibniz Institute for Food Systems Biology at the Technical University of Munich (Leibniz-LSB@TUM), Freising, Germany (1)
Technical University of Munich, TUM School of Life Sciences, Professorship of Food Biopolymer Systems, Lise-Meitner-Str. 34, 85354 Freising, Germany Leibniz Institute for Food Systems Biology at the Technical University of Munich, Lise-Meitner-Str. 34, 85354 Freising, Germany (1)
Univ. Lille, CNRS, USR 3290, MSAP, Miniaturisation pour la Synthèse l'Analyse et la Protéomique, F-59 000 Lille, France (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology, Greifswald, Germany (1)
Laboratoire MSAP UAR 3290 CNRS Bâtiment C4 Avenue Paul Langevin Cité Scientifique 59655 Villeneuve D'ascq 03 20 33 71 12 https://msap-lab.fr/ (1)

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