Biosafety - OmicsDI

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Unknown (4183)
Genomics (188)
Transcriptomics (83)
Proteomics (47)
Metabolomics (20)
Other (2)

Organisms

Homo sapiens (34)
Mus musculus (23)
Gallus gallus (5)
Sus scrofa (4)
Rattus norvegicus (4)
Lactobacillus johnsonii (3)
Bos taurus (2)
Danio rerio (2)
Triticum aestivum (2)
Companilactobacillus mindensis (2)
Latilactobacillus sakei (2)
Lentilactobacillus hilgardii (2)
Weissella confusa (2)
Companilactobacillus paralimentarius (2)
Limosilactobacillus panis (2)
Mammaliicoccus lentus (2)
Enterococcus casseliflavus (2)
Ornithodoros moubata (1)
Chlorocebus aethiops (1)
Burkholderia pseudomallei (1)
Coturnix japonica (1)
Macaca fascicularis (1)
mouse gut metagenome (1)
Neisseria meningitidis (1)
Mesocricetus auratus (1)
Pseudomonas putida KT2440 (1)
Mycobacterium tuberculosis H37Rv (1)
Plasmodium falciparum (1)
Anas platyrhynchos (1)
Drosophila melanogaster (1)

Organisms

Homo sapiens (16)
Mus musculus (14)
bioreactor metagenome (4)
Rattus norvegicus (3)
Enterobacter hormaechei (2)
Serratia marcescens (2)
Mycobacterium tuberculosis (2)
unidentified (2)
Bacillus paranthracis (2)
Corynebacterium phage CSP1 (1)
Lacticaseibacillus sp. PRA205 (1)
Neobacillus sedimentimangrovi (1)
Yersinia pestis CO92 (1)
Francisella tularensis subsp. tularensis SCHU S4 (1)
Venezuelan equine encephalitis virus (1)
Burkholderia pseudomallei K96243 (1)
Bacillus cereus (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Pantoea dispersa (1)
Klebsiella ornithinolytica (1)
Paracandidimonas lactea (1)
recombinant coronavirus (1)
Pandoraea sp. AYGW-1 (1)
Ensifer sp. M14 (1)
Botryosphaeria kuwatsukai (1)
Hyalomma asiaticum (1)
Pseudomonas chlororaphis subsp. aurantiaca PB-St2 (1)
Comamonas sediminis (1)
Pandoraea cepalis (1)
Exiguobacterium aestuarii (1)

Repository

ENA (183)
biostudies-arrayexpress (57)
pride (35)
geo (33)
MetaboLights (20)
iProX (11)
MassIVE (1)

Tissue

Cell culture (9)
Brain (4)
Blood serum (3)
Epithelial cell (3)
Lung (3)
Blood plasma (2)
Conjunctiva (2)
Cornea (2)
Eye (2)
Iris (2)
Retina (2)
Sclera (2)
Tear (2)
Vitreous humor (2)
Amygdala (1)
Blood (1)
Blood cell (1)
Byssus (1)
CT-26 cell (1)
Fibroblast (1)
Layer of hippocampus (1)
Monocyte (1)
Nasopharynx (1)
Neuron apoptotic process (1)
Primary cell (1)
Seed (1)
Urine (1)

Disease

Avian influenza (2)
COVID-19 (2)
Influenza (2)
Severe acute respiratory syndrome (2)
Dukes D primary colon cancer (1)
Colon cancer metastasis (1)
Primary Breast Cancer (1)
Benign adenoma (1)
Alzheimer's disease (1)
Chikungunya (1)
Kidney disease (1)

Technology Type

Mass Spectrometry (35)
Shotgun proteomics (19)
Mass spectrometry (17)
Bottom-up proteomics (12)
Data-dependent acquisition (8)
Mass spectrometry assay (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
HDMSE (2)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
Liquid Chromatography MS - negative - reverse phase (5)
Illumina NovaSeq 6000 (4)
Illumina Genome Analyzer IIx (3)
Illumina HiSeq 2500 (3)
Exactive (Thermo Scientific) (3)
NextSeq 500 (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - positive (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Performed by Novogene; Illumina library preparation instrumentation (provider standard) (1)
Chromatin IP kit (1)
Immunomagnetic separation system (e.g., Miltenyi MACS separator), Tissue culture facilities (biosafety cabinet, CO₂ incubator) , Bench centrifuge (1)
Dr. Tom Multi-omics Data Mining System (1)
Animal Experiment Facility (1)
SPF Animal Room (1)
PCR Thermocycler, Fragment Analyzer (1)
Centrifuge, Nucleic Acid Quantification Instrument (1)
Biosafety Cabinet, Liquid Nitrogen Tank, -80°C Freezer (1)
Agilent Technologies SureScan Microarray Scanne (1)
Jencons Millennium CO2 Incubator (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Illumina iSeq 100 (1)
DNBSEQ-T7 (1)
BGISEQ-500 (1)
Ion Torrent S5 XL (1)
Q Exactive (1)

Publication Date

2025 (20)
2026 (16)
2024 (16)
2021 (12)
2022 (10)
2020 (9)
2012 (9)
2015 (8)
2023 (8)
2017 (7)
2009 (7)
2014 (5)
2005 (5)
2010 (4)
2019 (4)
2016 (3)
2013 (3)
2011 (3)
2006 (1)
2018 (1)

CHEBI ID

CHEBI:17368 (6)
CHEBI:28790 (5)
CHEBI:18050 (5)
CHEBI:16015 (5)
CHEBI:16737 (5)
CHEBI:17191 (5)
CHEBI:15603 (5)
CHEBI:30837 (4)
CHEBI:17768 (4)
CHEBI:15584 (4)
CHEBI:36274 (4)
CHEBI:16857 (4)
CHEBI:17203 (4)
CHEBI:17196 (4)
CHEBI:17154 (4)
CHEBI:16283 (4)
CHEBI:16856 (4)
CHEBI:16220 (4)
CHEBI:18095 (4)
CHEBI:17802 (4)
CHEBI:16467 (4)
CHEBI:9008 (4)
CHEBI:15676 (4)
CHEBI:48131 (4)
CHEBI:18211 (4)
CHEBI:49168 (4)
CHEBI:17053 (4)
CHEBI:18257 (4)
CHEBI:15891 (4)
CHEBI:37024 (4)

Metabolite Name

Hypoxanthine (5)
Allantoin (4)
Serotonin (4)
Pantothenic acid (4)
Citric acid (4)
Azelaic acid (4)
Palmitic acid (4)
Hippuric acid (4)
2-Hydroxy-2-ethylsuccinic acid (3)
L-2-Hydroxyglutaric acid (3)
2-Hydroxyadipic acid (3)
Ergosterol (3)
Allantoic acid (3)
Spermine (3)
Niacinamide (3)
Allocholic acid (3)
Pyroglutamic acid (3)
Betaine (3)
Lithocholic acid glycine conjugate (3)
L-Cystine (3)
Coniferin (3)
Citrulline (3)
Voriconazole (3)
L-Arginine (3)
Taurine (3)
Phenylpyruvic acid (3)
Citraconic acid (3)
Itaconic acid (3)
Isocitric acid (3)
Oleamide (3)

First Public Date

2026 (56)
2024 (28)
2025 (27)
2023 (15)
2014 (11)
2020 (10)
2022 (9)
2019 (8)
2018 (4)
2017 (4)
2021 (3)
2016 (3)
2015 (3)
2013 (1)
2012 (1)

Classification

bacteria (13)
viruses (2)

Study type

Transcription profiling by array (32)
RNA-seq of coding RNA (14)
DNA-seq (2)
RNA-seq of coding RNA from single cells (2)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (692)
2022 (640)
2023 (558)
2021 (548)
2024 (494)
2020 (360)
2019 (156)
2018 (150)
2017 (127)
2026 (124)
2016 (97)
2015 (83)
2014 (73)
2013 (28)
2012 (27)
2011 (24)
2009 (14)
2010 (12)
2007 (8)
2005 (6)
2008 (6)
2004 (4)
2003 (3)
2002 (3)
1998 (2)
2006 (1)

Lab affiliation

Associate Professor, School of Animal Sciences Core Faculty, School of Neuroscience Faculty of Health Sciences Vice Chair, Institutional Biosafety Committee (IBC) Virginia Tech (2)
No. 2 West Yuanmingyuan Road, Haidian District, Beijing (2)
Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (2)
School of Biological and Behavioural Sciences Queen Mary University of London (2)
University of Houston, Houston, TX 77204 (2)
Associate Professor (1)
Bacteriology Department, University of Wisconsin-Madison (1)
CAS Key Laboratory of Special Pathogens and Biosafety, Center for Biosafety Mega-Science, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, China. (1)
Chemical and Biological Signatures Group, Pacific Northwest National Laboratory (1)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaaxi 712100, P. R. (1)
DST/NRF Centre of Excellence for Biomedical Tuberculosis Research/South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa (1)
Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India (1)
Department of Chemistry and Biochemistry, University of Maryland, College Park (1)
Department of Medicine, Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Department of Zoology, School of Natural Sciences, National University of Ireland, Galway. (1)
Dept. Cellular Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
Dept. Cellular and Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
Faculty of Sciences, Department of Biochemistry and microbiology, Ghent University, Belgium (1)
Institute for Biology-Microbiology Freie Universität Berlin Königin-Luise-Strasse 12-16 D-14195 Berlin Germany (1)
Manchester Institute of Biotechnology, The University of Manchester, UK (1)
Nanobio Measurement Group, Division of Biomedical Metrology, Korea Research Institute of Standards and Science (KRISS), Daejeon 34113, Republic of Korea (1)
One Health Institute, University of California, Davis (1)
Professor and president of BGI Academy of Marine Sciences (1)
Pulmobiotics, LTD (1)
Shenyang Agricultural University (1)
Taipei Medical University (1)
The Second Affiliated Hospital of Air Force Medical University (1)
Unité de recherche en biologie et épidémiologie parasitaires (URBEP) – UMR6236 – IFR48, Institut de Recherche Biomédicale des Armées (IRBA), antenne Marseille, URMITE UMR 6236, GSBdD de Marseille Aubagne, 111 avenue de la corse BP 40026, 13568 Marseille cedex 02, France. (1)
Univ. Lille, CNRS, INSERM, CHU Lille, Institut Pasteur de Lille, US 41 - UAR 2014 – PLBS, F-59000 Lille, France (1)
Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, US41 – UMS 2014 – PLBS, F-59000 Lille, France (1)

Tags

pathogen (15)
pathogen:bacterium (13)
covid19 (2)
pathogen:virus (2)
wastewater (1)

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Biosafety guidelines for handling microorganisms in the teaching laboratory: development and rationale.

Not available

S-EPMC3706168 | biostudies-literature

Biosafety and proteome profiles of distinct heat-inactivation methods for Mycobacterium tuberculosis

In this project, we investigated the effets of heat inactivation for different time points to evaluate the biosafety and proteome changes.

ORGANISM(S): Mycobacterium tuberculosis H37Rv

2022-06-09 | PXD027011 | Pride

Biosafety concept: Origins, Evolution, and Prospects.

Not available

S-EPMC12412398 | biostudies-literature

Exploring potential biosafety implications in DNA information storage

Not available

S-EPMC12125688 | biostudies-literature

Biosafety circuits for Mycoplasma - DNA-seq for passages 2, 3 and 15 of clonal Mycoplasma pneumoniae biosafety strains to study long-term stability of kill-switch devices

PRJEB47700 | ENA

Biosafety circuits for Mycoplasma - DNA-seq for passages 2, 3 and 15 of clonal Mycoplasma pneumoniae biosafety strains to study long-term stability of kill-switch devices

We have engineered synthetic gene switches to control and limit Mycoplasma growth for biosafety containment applications. Mycoplasmas have high mutation rates and, the accumulation of mutations that inactivate the circuit is expected. However, the question is how resilient is the kill-switch to muta...

ORGANISM(S): Mycoplasma pneumoniae M129

2022-02-09 | E-MTAB-10981 | biostudies-arrayexpress

Biosafety considerations triggered by genome-editing technologies.

Not available

S-EPMC12276576 | biostudies-literature

Biosafety and data quality considerations for animal experiments with highly infectious agents at ABSL-3 facilities.

Not available

S-EPMC7148666 | biostudies-literature

Guidelines for Biosafety in Teaching Laboratories Version 2.0: A Revised and Updated Manual for 2019.

Not available

S-EPMC6914345 | biostudies-literature

Experiences During the COVID-19 Pandemic: A Survey of Biosafety Professionals.