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Instrument Platform

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UNIPROT ID/AC

P21399 (68)
P30613 (67)
P06744 (67)
Q99798 (67)
Q16836 (67)
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O75251 (67)
Q01581 (67)
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E9KL42 (66)
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Q53H96 (66)

ENSEMBL ID

ENSG00000064012 (4)

CHEBI ID

CHEBI:16480 (139)
CHEBI:27931 (136)
CHEBI:17411 (134)
CHEBI:29033 (133)
CHEBI:17754 (128)
CHEBI:15428 (128)
CHEBI:29034 (125)
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CHEBI:15361 (114)
CHEBI:4167 (113)
CHEBI:27402 (112)
CHEBI:16551 (112)
CHEBI:37671 (109)
CHEBI:30031 (106)
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CHEBI:46398 (102)
CHEBI:16526 (98)
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CHEBI:16349 (95)
CHEBI:17029 (94)

Metabolite Name

Hypoxanthine (61)
Adenine (54)
Inosine (53)
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L-Tryptophan (52)
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Uracil (49)
L-Tyrosine (49)
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L-Valine (38)
Taurine (37)
4-Hydroxybenzaldehyde (37)
Cytosine (37)
Citrulline (36)
Indole (36)
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L-Lysine (34)
Citric acid (34)
Hexadecanedioic acid (34)
Cytidine (34)

First Public Date

2014 (1230)
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2021 (783)
2020 (745)
2019 (673)
2018 (557)
2017 (510)
2013 (502)
2015 (382)
2016 (363)
2012 (17)
2010 (3)

Modelling Approach

Constraint-based model (114)
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Study status

Completed (2)
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Lab affiliation

Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (13)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (13)
Department of Biotechnology, Delft University of Technology, The Netherlands. (12)
Department of Biotechnology, TU Delft, The Netherlands (10)
VIB-UGent Center for Medical Biotechnology (9)
Molecular Biology and Biotechnology Division, ICAR-National Bureau of Fish Genetic Resources, Lucknow, Uttar Pradesh 226002, India (8)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (7)
Head, Chair Plant Biotechnology Faculty of Biology University of Freiburg Schaenzlestrasse 1 D-79104 Freiburg Germany (6)
1VIB-UGent Center for Medical Biotechnology, VIB, 9052 Ghent, Belgium 2Department of Biomolecular Medicine, Ghent University, 9052 Ghent, Belgium (5)
Chemical Engineering and Biotechnology (5)
Helmholtz Centre for Environmental Research – UFZ, Department of Molecular Environmental Biotechnology, Leipzig, Germany (5)
Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece (5)
Laboratory of Mass Spectrometry, Core Facility Laboratories, Intercollegiate Faculty of Biotechnology UG&MUG, University of Gdansk, Gdansk, Poland (5)
Applied Microbiology, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany (4)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (4)
Biotechnology Research Center, No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China (4)
Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo 113-8656, Japan. (4)
Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II (4)
Department of Plant Science and Technology, Chung-Ang University, Anseong, Republic of Korea (4)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Laboratory of Protein Mass Spectrometry, Faculty of Biotechnology, University of Wroclaw (4)
Plant Genetic Engineering and Molecular Biology Lab, Department of Biotechnology, Periyar University, Salem - 636011, Tamil Nadu, India. (4)
Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes (URMITE) UMR 6236, Faculté de médecine 27 Bd Jean Moulin 13385 MARSEILLE Cedex 05 FRANCE (4)
University of Miami School of Medicine (4)
Agricultural Biotechnology Research Center, Academia Sinica, Taiwan (3)
Austrian Centre of Industrial Biotechnology (ACIB), Petersgasse 14, 8010 Graz, Austria; Medical University of Graz, Institute of Pathology, Research Unit Functional Proteomics and Metabolic Pathways, Stiftingtalstrasse 24, 8010 Graz, Austria; Omics Center Graz, BioTechMed-Graz, Stiftingtalstrasse 24, 8010 Graz, Austria. (3)
Cornell University (3)
Daglig leder, PROMEC Institutt for klinisk og molekylær medisin lars.hagen@ntnu.no 73598508 72573342 Laboratoriesenteret, 231.04.008, Øya, Erling Skjalgssons gate 1 (3)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (3)
Department of Biochemistry and Molecular Biology; and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, VIC 3010. Australia (3)

Keyword

TSB-9-W1 (1)

IsPrivate

False (331)

Model Flag

Non Kinetic (193)

Submitter Keywords

FROG (18)
Oncology (1)
Manuscript Accepted (1)
Not Peer Reviewed (1)

Classification

bacteria (695)
fungi (132)
viruses (42)
protozoa (19)
helminths (1)

Modification

15.994915 (9)
2x(15)N labeled L-lysine (6)
4x(15)N labeled L-arginine (6)
57.021464 (6)
-17.026549 (5)
42.010565 (5)
Not available (4)
N6 (3)
N6-dimethyl-L-lysine (3)
-18.010565 (2)
15.99491 (2)
57.02146 (2)
58.005479 (2)
0.984 (1)
0.984016 (1)
227.126991 (1)
31.989829 (1)
4 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
42.01056 (1)
43.00581 (1)
79.966331 (1)
9.030194 (1)
Heavy form - site K (1)
Light form - site K (1)

Study type

Transcription profiling by array (647)
RNA-seq of coding RNA (273)
ChIP-seq (185)
ChIP-chip by tiling array (68)
RNA-seq of non coding RNA (51)
Comparative genomic hybridization by array (44)
Other (42)
Unknown experiment type (29)
Methylation profiling by array (26)
ChIP-chip by array (25)
Methylation profiling by high throughput sequencing (17)
RNA-seq of total RNA (13)
Cell line - High-throughput sequencing (11)
Transcription profiling by tiling array (10)
RNA-seq of coding RNA from single cells (10)
Ribo-seq (6)
Animal - High-throughput sequencing (5)
Transcription profiling by SAGE (4)
Animal - One-color microarray (3)
High-throughput sequencing (3)
DNA-seq (3)
Proteomic profiling by array (3)
RNAi profiling by array (2)
Genotyping by array (2)
CLIP-seq (2)
ATAC-seq (2)
MicroRNA profiling by array (2)
Transcription profiling by MPSS (1)
Cell line - Two-color microarray (1)
Human - Two-color microarray (1)

Release Date

2022 (20910)
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2020 (15743)
2024 (14629)
2019 (12672)
2018 (11246)
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2006 (860)
2005 (661)
2004 (438)
2003 (356)
2002 (254)
2001 (229)
2000 (186)
1999 (153)
1998 (129)
1997 (34)

Location

China (2)
Taiwan (1)

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An LC–MS-based lipidomics pre-processing framework underpins rapid hypothesis generation towards CHO systems biotechnology

INTRODUCTION: Given a raw LC–MS dataset, it is often required to rapidly generate initial hypotheses, in conjunction with other ‘omics’ datasets, without time-consuming lipid verifications. Furthermore, for meta-analysis of many datasets, it may be impractical to conduct exhausti...

2018-07-17 | MTBLS493 | MetaboLights

Composting biotechnology information

Composting biotechnology information Genome sequencing

PRJNA1060420 | ENA

Growing a circular economy with fungal biotechnology: a white paper.

Not available

S-EPMC7140391 | biostudies-literature

Repositioning microbial biotechnology against COVID-19: the case of microbial production of flavonoids.

Not available

S-EPMC7675739 | biostudies-literature

Smallbone2013 - Yeast metabolic model with linlog rate law

Kieran Smallbone & Pedro Mendes. Large-Scale Metabolic Models: From Reconstruction to Differential Equations. Industrial Biotechnology 9, 4 (2013). Genome-scale kinetic models of metabolism are important for rational design of the metabolic engineering required for industrial biotechnology applicat...

2024-09-02 | BIOMD0000000471 | BioModels

Smallbone2013 - Yeast metabolic model with modular rate law

2024-09-02 | BIOMD0000000472 | BioModels

Smallbone2013 - Yeast metabolic model with modular rate law, merged with Pritchard 2002

2024-09-02 | BIOMD0000000473 | BioModels

Smallbone2013 - E.coli metabolic model with linlog rate law

2024-09-02 | BIOMD0000000469 | BioModels

Smallbone2013 - E.coli metabolic model with modular rate law

2024-09-02 | BIOMD0000000470 | BioModels

Establishing Chlamydomonas reinhardtii as an industrial biotechnology host.

Not available

S-EPMC4515103 | biostudies-literature