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Unknown
(8524)
Genomics
(1346)
Transcriptomics
(433)
Proteomics
(103)
Metabolomics
(24)
Models
(11)
Genomic
(7)
Other
(6)
Organisms
Gallus gallus
(194)
Mus musculus
(58)
Homo sapiens
(49)
Taeniopygia guttata
(30)
Coturnix japonica
(17)
Anas platyrhynchos
(11)
Colinus virginianus
(10)
Rattus norvegicus
(10)
Macaca mulatta
(7)
Arabidopsis thaliana
(7)
Canis lupus familiaris
(6)
Danio rerio
(6)
Meleagris gallopavo
(5)
Neurospora crassa
(5)
Oncorhynchus mykiss
(4)
Capsicum annuum
(3)
Xenopus laevis
(3)
Junco hyemalis
(3)
Aves
(2)
Sturnus vulgaris
(2)
Monodelphis domestica
(2)
Gorilla gorilla
(2)
Ornithorhynchus anatinus
(2)
synthetic construct
(2)
Saccharomyces cerevisiae
(2)
Pseudomonas putida BIRD-1
(2)
Babesia microti
(1)
Erithacus rubecula
(1)
Loxia curvirostra
(1)
Catostomus macrocheilus
(1)
Organisms
Vibrio parahaemolyticus
(120)
bird metagenome
(39)
Gallus gallus
(37)
Escherichia coli
(14)
Influenza A virus
(11)
Mus musculus
(8)
Serinus canaria
(6)
Coturnix japonica
(6)
feces metagenome
(6)
Zonotrichia albicollis
(5)
gut metagenome
(5)
soil metagenome
(5)
Homo sapiens
(5)
Tauraco erythrolophus
(4)
Atlapetes fuscoolivaceus
(4)
Gavia stellata
(4)
Opisthocomus hoazin
(4)
Hylocichla mustelina
(4)
Acanthisitta chloris
(4)
Hirundo rustica
(4)
Grus americana
(4)
Rhea pennata
(4)
Acridotheres tristis
(4)
Prunus padus
(4)
Sturnus vulgaris
(4)
Yponomeuta evonymella
(4)
Chlamydotis macqueenii
(4)
Tarachidia candefacta
(4)
Struthio camelus
(4)
Vibrio metschnikovii
(4)
Repository
ENA
(1301)
biostudies-arrayexpress
(395)
pride
(88)
geo
(78)
MetaboLights
(20)
MassIVE
(11)
Cell Collective
(9)
dbGaP
(7)
EGA
(7)
EVA
(3)
GNPS
(3)
BioModels
(2)
jPOST
(2)
GPMDB
(1)
iProX
(1)
MetabolomicsWorkbench
(1)
PAXDB
(1)
Tissue
Cell culture
(15)
Cerebrospinal fluid
(5)
Fibroblast
(5)
Cell line cell
(4)
Epithelial cell
(4)
Lung
(4)
Embryonic stem cell
(3)
Blood serum
(2)
Bone
(2)
Early embryonic cell
(2)
Eggshell
(2)
Liver
(2)
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(2)
Stem cell
(2)
Yeast cells
(1)
Brain
(1)
Colon
(1)
Egg
(1)
Embryo
(1)
Embryonic fibroblast
(1)
Epithelial cell of lung
(1)
HEK-293T cell
(1)
Hypothalamus
(1)
Macrophage
(1)
Organism or virus or viroid
(1)
Seminal plasma
(1)
Sperm
(1)
Sperm flagellum
(1)
Spermatogonium
(1)
Spleen
(1)
Disease
Influenza
(4)
Disease free
(3)
H9N2 infected
(2)
Avian influenza
(2)
Pulmonary tuberculosis
(2)
Large cell neuroendocrine carcinoma
(1)
Infected with IBDV strain F52/70
(1)
Mock infected
(1)
Infected
(1)
IBDV infected
(1)
Chicken Anaemia Virus infected
(1)
Non infected
(1)
Normal
(1)
Not Available
(1)
Lipid metabolism disorder
(1)
Mitochondrial complex I deficiency
(1)
Non-small cell lung carcinoma
(1)
Organic acidemia
(1)
Parasitic helminthiasis infectious disease
(1)
Sarcoma
(1)
Technology Type
Mass Spectrometry
(88)
Shotgun proteomics
(38)
Affinity purification coupled with mass spectrometry proteomics
(19)
Mass spectrometry
(15)
Bottom-up proteomics
(13)
Gel-based experiment
(8)
Data-dependent acquisition
(7)
Mass spectrometry assay
(4)
Data-independent acquisition
(4)
HDMSE
(4)
Top-down proteomics
(3)
Chemical cross-linking coupled with mass spectrometry proteomics
(2)
ILLUMINA, Illumina HiSeq 2000
(1)
Illumina HiSeq 2500
(1)
Illumina HiSeq 2000
(1)
NMR spectroscopy
(1)
NMR
(1)
MSE
(1)
SRM/MRM
(1)
SWATH MS
(1)
Instrument Platform
Illumina HiSeq 2500
(22)
NextSeq 550
(16)
Illumina NovaSeq 6000
(12)
Illumina Genome Analyzer IIx
(5)
NextSeq 2000
(4)
ScanArray 5000 [PerkinElmer]
(3)
Illumina HiSeq 3000
(3)
Illumina HiSeq 4000
(3)
NextSeq 500
(3)
Illumina MiSeq
(3)
DNA Microarray Scanner BA [Agilent Technologies]
(2)
Illumina NovaSeq X
(2)
R
(2)
Illumina HiSeq 2000
(2)
Dell Precision Tower 7910 workstation
(1)
Affymetrix GCS3000 7G SCANNER
(1)
GeneChip Hybridization Oveer 640
(1)
Deeptools, macs3
(1)
Bio-Rad T100 Thermocycler
(1)
Diva
(1)
Mist nets
(1)
Agilent Technologies Microarray Scanner
(1)
HiSeq X Five
(1)
IScan
(1)
AB SOLiD 4 System
(1)
GeneChip Scanner 3000 [Affymetrix]
(1)
GenePix Personal 4100A [Axon Instruments]
(1)
GenePix Professional 4200A [Axon Instruments]
(1)
GenePix 4000A [Axon Instruments]
(1)
Axon- GenePix4000B
(1)
Publication Date
2012
(61)
2010
(48)
2013
(47)
2015
(44)
2023
(40)
2021
(37)
2025
(35)
2011
(35)
2016
(31)
2022
(28)
2009
(28)
2026
(27)
2014
(25)
2008
(23)
2019
(20)
2024
(19)
2017
(17)
2018
(16)
2020
(12)
2007
(6)
2006
(4)
2005
(1)
UNIPROT ID/AC
160488.PP_0985
(1)
160488.PP_3365
(1)
ACCA_PSEPK
(1)
ACCD_PSEPK
(1)
ACP_PSEPK
(1)
ACSA1_PSEPK
(1)
ADE_PSEPK
(1)
AGUA_PSEPK
(1)
AK_PSEPK
(1)
ALGB_PSEPK
(1)
ALGC_PSEPK
(1)
ALLA_PSEPK
(1)
AMGK_PSEPK
(1)
AMPA_PSEPK
(1)
ANMK_PSEPK
(1)
APAG_PSEPK
(1)
APAH_PSEPK
(1)
APEB_PSEPK
(1)
APT_PSEPK
(1)
ARCA_PSEPK
(1)
ARGA_PSEPK
(1)
ARGB_PSEPK
(1)
ARGC1_PSEPK
(1)
ARGD_PSEPK
(1)
ARGJ_PSEPK
(1)
ARLY_PSEPK
(1)
AROB_PSEPK
(1)
AROC_PSEPK
(1)
AROK_PSEPK
(1)
AROQ1_PSEPK
(1)
CHEBI ID
CHEBI:17368
(7)
CHEBI:1148
(5)
CHEBI:16704
(5)
CHEBI:16857
(5)
CHEBI:17750
(5)
CHEBI:15891
(5)
CHEBI:17568
(5)
CHEBI:15741
(5)
CHEBI:15611
(5)
CHEBI:32816
(5)
CHEBI:16027
(5)
CHEBI:17154
(5)
CHEBI:16737
(5)
CHEBI:16414
(5)
CHEBI:17191
(5)
CHEBI:16643
(5)
CHEBI:15756
(5)
CHEBI:16828
(5)
CHEBI:15753
(4)
CHEBI:16708
(4)
CHEBI:17752
(4)
CHEBI:19138
(4)
CHEBI:16104
(4)
CHEBI:422
(4)
CHEBI:17724
(4)
CHEBI:18183
(4)
CHEBI:37024
(4)
CHEBI:16196
(4)
CHEBI:18132
(4)
CHEBI:17509
(4)
Metabolite Name
Pyridoxal
(4)
Hypoxanthine
(4)
DHA
(3)
7-methylguanosine
(3)
EPA
(3)
Uracil
(3)
Argininosuccinic acid
(3)
Phytosphingosine
(3)
Pyridoxine
(3)
Spermidine
(3)
Guanine
(3)
Cytosine
(3)
Palmitic acid
(3)
Oleic acid
(3)
NADH
(3)
Adenine
(3)
Uridine
(3)
Glycerophosphocholine
(3)
AA
(2)
9,10-dihydroxy-12z-octadecenoic acid
(2)
6-acetylmorphine
(2)
Leu-Gly-Leu
(2)
SM(30:1)
(2)
PC(16:0/18:0)
(2)
Pyrimidine
(2)
Cer(d18:0/20:0)
(2)
Pirimicarb
(2)
Salmeterol
(2)
D-2-phosphoglyceric acid
(2)
Atorvastatin
(2)
First Public Date
2023
(254)
2026
(182)
2024
(168)
2025
(139)
2022
(84)
2021
(81)
2019
(76)
2020
(68)
2013
(61)
2014
(53)
2018
(51)
2017
(38)
2016
(24)
2015
(20)
2012
(2)
Modelling Approach
Ordinary differential equation model
(2)
Lab affiliation
University of Warwick
(8)
Infection Program, Monash Biomedicine Discovery Institute, Department of Microbiology, Monash University, VIC 3800, Australia
(5)
Professor Dept. Cell Biology 615 Michael Street Whitehead 446 Atlanta, GA, 30322 Emory University
(4)
School of Biosciences, University of Sheffield, Sheffield, UK
(3)
University of Edinburgh
(3)
CEA-Marcoule, DSV-Li2D, 30207 Bagnols-sur-Cèze, France
(2)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom
(2)
Department of Chemistry & Chemical Biology, Northeastern University
(2)
Department of Gene Regulation Friedrich Miescher Institutefor Biomedical Research
(2)
Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland
(2)
Global Health Institute, EPFL, Lausanne, Switzerland
(2)
Institute of Animal Husbandry and Veterinary Sciences, Zhejiang Academy of Agricultural Sciences
(2)
Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK Interdisciplinary Centre for Ancient Life, Department of Earth and Environmental Sciences, University of Manchester, Oxford Road 131, Manchester, M13 9PL, UK
(2)
1 SaBio, Instituto de Investigación en Recursos Cinegéticos (IREC), Consejo Superior de Investigaciones Científicas (CSIC), Universidad de Castilla-La Mancha (UCLM)-Junta de Comunidades de Castilla-La Mancha (JCCM), Ronda de Toledo 12, 13005 Ciudad Real, Spain
(1)
BBSRC Discovery Fellow & BMC Microbiome Managing Editor Arthur Willis Environmental Research Centre University of Sheffield Sheffield S10 1AE
(1)
Bio21 Molecular Science and Biotechnology Institute,Department of Biochemistry and Pharmacology, University of Melbourne
(1)
Biochemistry
(1)
Biotech Research and Innovation Centre (BRIC) University of Copenhagen Ole Maaløes Vej 5 2200 Copenhagen N Denmark
(1)
CRUK - Scotland Institute - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom
(1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK
(1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK.
(1)
Center for Bio/Molecular Science & Engineering, NRL-DC
(1)
Center for Ecological and Evolutionary Synthesis Department of Biosciences University of Oslo
(1)
Dana-Farber Cancer Institute 450 Brookline Avenue, Longwood Center 3217 Boston, MA 02215
(1)
Department of Animal and Poultry Sciences, Virginia Tech., Blacksburg, VA, USA
(1)
Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia
(1)
Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA Arkansas Children’s Research Institute, 13 Children’s Way, Little Rock, AR 72202, USA
(1)
Department of Chemistry & Chemical biology, Northeastern University
(1)
Department of Gene Regulation Friedrich Miescher Institute for Biomedical Research
(1)
Department of Life Sciences and Systems Biology University of Turin Italy
(1)
Tags
pathogen
(179)
pathogen:bacterium
(162)
xref:PubMed:33911273
(96)
pathogen:virus
(15)
xref:PubMed:38092908
(13)
xref:PubMed:41890112
(13)
xref:PubMed:20015954
(4)
xref:PubMed:38566597
(2)
xref:PubMed:28302717
(2)
pathogen:protozoan
(2)
xref:ArrayExpress:E-MTAB-5676
(1)
xref:PubMed:29596420
(1)
xref:PubMed:33838494
(1)
xref:PubMed:12584441
(1)
xref:PubMed:16884891
(1)
xref:PubMed:29703149
(1)
xref:PubMed:35867573
(1)
xref:PubMed:35404451
(1)
xref:PubMed:30451354
(1)
xref:PubMed:42317345
(1)
xref:PubMed:28860085
(1)
xref:PubMed:27233434
(1)
xref:PubMed:28830337
(1)
xref:PubMed:23855484
(1)
xref:PubMed:22486501
(1)
xref:PubMed:31676844
(1)
xref:PubMed:26190080
(1)
xref:PubMed:23258891
(1)
xref:PubMed:37665208
(1)
xref:PubMed:24585375
(1)
IsPrivate
False
(2)
Classification
bacteria
(162)
viruses
(15)
protozoa
(2)
Modification
-17.026549
(2)
10.008269
(2)
15.994915
(2)
42.010565
(2)
45.029395
(2)
57.021464
(2)
6.020129
(2)
+3amu)
(1)
0.984016
(1)
15.99491
(1)
4x(15)N labeled L-arginine
(1)
57.02146
(1)
Study type
Transcription profiling by array
(233)
RNA-seq of coding RNA
(74)
ChIP-seq
(13)
Comparative genomic hybridization by array
(9)
RNA-seq of coding RNA from single cells
(9)
Methylation profiling by high throughput sequencing
(8)
RNA-seq of non coding RNA
(8)
Animal - Single-cell sequencing
(5)
Cell line - High-throughput sequencing
(5)
Unknown experiment type
(4)
Animal - High-throughput sequencing
(3)
ChIP-chip by array
(3)
DNA-seq
(3)
Methylation profiling by array
(3)
RNA-seq of total RNA
(3)
Genotyping by array
(2)
ATAC-seq
(2)
ChIP-chip by tiling array
(1)
High-throughput sequencing
(1)
Transcription profiling by tiling array
(1)
MicroRNA profiling by high throughput sequencing
(1)
Bisulfite-seq
(1)
Ribo-seq
(1)
Other
(1)
CUT&RUN
(1)
Release Date
2022
(900)
2021
(803)
2023
(792)
2025
(738)
2020
(726)
2024
(674)
2019
(633)
2018
(552)
2017
(493)
2015
(456)
2016
(443)
2014
(327)
2013
(267)
2012
(223)
2011
(172)
2010
(161)
2009
(121)
2008
(113)
2026
(108)
2007
(62)
2006
(55)
2005
(27)
2004
(17)
2003
(16)
2002
(13)
2000
(9)
2001
(6)
1998
(6)
1999
(5)
1997
(1)
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bird gut metagenome, bird metagenome, metagenome
bird gut metagenome, bird metagenome, metagenome Genome sequencing and assembly
PRJNA1313281
|
ENA
Cite
bird metagenome
bird metagenome Raw sequence reads
PRJNA556790
|
ENA
Cite
bird metagenome
Metagenomes of environmental water and bird feces (PRJCA044159)
PRJDB39110
|
ENA
Cite
Geospiza strain:Big Bird
Whole genomes of Big Bird lineage
PRJNA392917
|
ENA
Cite
Proteomics of Pseudomonas putida BIRD-1
Understanding Butanol Tolerance and Assimilation in Pseudomonas putida BIRD-1, analysis of soluble proteins
ORGANISM(S):
Pseudomonas putida (strain BIRD-1)
2018-10-24
|
PXD002679
|
Pride
Shotgun proteomics
butanol tolerance
butanol metabolism
ms/ms
Cite
Proteomics of Pseudomonas putida BIRD-1
Understanding Butanol Tolerance and Assimilation in Pseudomonas putida BIRD-1, analysis of proteins associated to membranes
ORGANISM(S):
Pseudomonas putida (strain BIRD-1)
2018-10-24
|
PXD002655
|
Pride
Shotgun proteomics
butanol tolerance
butanol metabolism
ms/ms
Cite
bird metagenome
Bird Metagenome
PRJNA904823
|
ENA
Cite
bird metagenome
Chicken tissue microbial decomposition study: bird metagenome Raw sequence reads
PRJNA573692
|
ENA
Cite
bird metagenome
bird metagenome Metagenome
PRJNA1379261
|
ENA
Cite
bird metagenome
bird metagenome Metagenome
PRJNA378683
|
ENA
Cite
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