Bivalve - OmicsDI

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Unknown (935)
Genomics (272)
Transcriptomics (56)
Proteomics (24)
Metabolomics (13)

Organisms

Desulfofundulus kuznetsovii DSM 6115 (22)
Paulownia (22)
Rathayibacter toxicus (22)
Betacoronavirus sp. (22)
Pseudomonas sp. UK4 (22)
Chlorocebus aethiops aethiops (22)
Pseudomonas aeruginosa (22)
Methylorubrum extorquens DM4 (22)
Naegleria fowleri (22)
Neurospora crassa (22)
Methylorubrum extorquens PA1 (22)
Mytilus galloprovincialis (21)
Mytilus edulis (5)
Mytilus californianus (4)
Ruditapes decussatus (4)
Ruditapes philippinarum (4)
Magallana gigas (4)
Sinonovacula constricta (3)
Perkinsus olseni (2)
Calyptogena magnifica symbiont (1)
Citrus trifoliata (1)
Pinctada maxima (1)
Bathymodiolus azoricus (1)
Vitis vinifera (1)
Danio rerio (1)
Homo sapiens (1)
Magallana angulata (1)
Mactra quadrangularis (1)
Dreissena rostriformis (1)
Perna viridis (1)

Organisms

Mytilus galloprovincialis (13)
mollusc metagenome (8)
Ruditapes philippinarum (7)
Pinctada fucata (5)
Placopecten magellanicus (4)
Ruditapes decussatus (4)
Magallana gigas (4)
Limnoperna fortunei (3)
Mizuhopecten yessoensis (3)
Perna viridis (3)
Mytilus coruscus (3)
Escherichia coli (3)
Vibrio neptunius (2)
Pinctada margaritifera (2)
Bivalvia (2)
Tegillarca granosa (2)
Cryolaternula elliptica (2)
Acharax haimaensis (2)
Sinonovacula constricta (2)
Mactra quadrangularis (2)
marine metagenome (2)
unidentified (2)
Vibrio mimicus VM223 (1)
Candidatus Vesicomyidisocius calyptogenae (1)
Ctenoides ales (1)
Congeria kusceri (1)
Vibrio brasiliensis (1)
Aequipecten opercularis (1)
Eutima sp. BMK-2020 (1)
Dreissena rostriformis (1)

Repository

ENA (271)
biostudies-arrayexpress (32)
geo (25)
pride (22)
MetaboLights (13)
iProX (1)
MassIVE (1)

Tissue

Gill (5)
Whole body (4)
Mantle (2)
Hemocyte (1)
Foot muscle (1)
Byssus (1)
Exoskeleton (1)

Technology Type

Mass Spectrometry (22)
Shotgun proteomics (18)
Mass spectrometry (11)
NMR spectroscopy (3)
Data-dependent acquisition (2)
Bottom-up proteomics (2)
Mass spectrometry assay (1)
Gel-based experiment (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
Genewiz library construction hardware (2)
Centrifuge, RNeasy Kit (Qiagen) (2)
Nuclear Magnetic Resonance (NMR) - (2)
Liquid Chromatography MS - positive - reverse phase (2)
Scalpel, dry ice (1)
Scalpel, dry ice. (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Q Exactive HF (1)
MS Imaging - Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive (1)
Direct Infusion MS - Positive (DI-MS (Positive)) (1)
Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive (1)
LTQ FT Ultra (Thermo Scientific) (1)
Liquid Chromatography MS - negative- reverse phase (1)
Liquid Chromatography MS - positive- reverse phase (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Bruker (1)
MS Imaging - (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2011 (16)
2019 (10)
2014 (8)
2025 (7)
2023 (7)
2022 (7)
2026 (5)
2010 (5)
2024 (5)
2018 (5)
2021 (3)
2020 (3)
2013 (3)
2012 (3)
2015 (2)
2016 (2)
2007 (1)
2017 (1)
2009 (1)

CHEBI ID

CHEBI:25017 (3)
CHEBI:15741 (3)
CHEBI:16449 (3)
CHEBI:29016 (3)
CHEBI:16027 (3)
CHEBI:78320 (3)
CHEBI:87087 (2)
CHEBI:32389 (2)
CHEBI:69061 (2)
CHEBI:72998 (2)
CHEBI:17126 (2)
CHEBI:26986 (2)
CHEBI:16811 (2)
CHEBI:17234 (2)
CHEBI:28867 (2)
CHEBI:16750 (2)
CHEBI:24898 (2)
CHEBI:30794 (2)
CHEBI:15428 (2)
CHEBI:6650 (2)
CHEBI:34698 (2)
CHEBI:17015 (2)
CHEBI:27266 (2)
CHEBI:17750 (2)
CHEBI:15891 (2)
CHEBI:17306 (2)
CHEBI:16704 (2)
CHEBI:16761 (2)
CHEBI:27897 (2)
CHEBI:143718 (1)

Metabolite Name

Malate (2)
35-aminobacteriohopane-31,32,33,34-tetrol (2)
ADP (2)
Tryptophan (2)
Bacteriohopane-32,33,34,35-tetrol (1)
PC(18:1(5Z)/18:1(5Z)) (1)
PS(O-42:7) PS(P-42:6) (1)
PS(O-42:6/P-42:5)d (1)
PS(O-42:6/P-42:5)b (1)
PS(O-42:6/P-42:5)a (1)
PS(O-42:5/P-42:4) (1)
PS(O-42:3/P-42:2) (1)
PS(O-42:2) PS(P-42:1) (1)
PS(O-40:6/P-40:5)c (1)
PS(O-40:6) PS(P-40:5)b (1)
PS(O-40:6) PS(P-40:5)a (1)
PS(O-40:5/P-40:4)c (1)
PS(O-40:5/P-40:4)b (1)
PS(O-40:5) PS(P-40:4)a (1)
PS(O-40:4/P-40:3) (1)
PS(O-40:3) PS(P-40:2) (1)
PS(O-40:2/P-40:1) (1)
PS(O-40:0) (1)
PS(O-38:6) PS(P-38:5) (1)
PS(O-38:5) PS(P-38:4) (1)
PS(O-38:4/P-38:3) (1)
PS(O-38:3/P-38:2) (1)
PS(O-38:2) PS(P-38:1) (1)
PS(O-38:1) PS(P-38:0) (1)
PS(O-36:3/P-36:2)a (1)

First Public Date

2026 (44)
2025 (35)
2024 (34)
2022 (25)
2019 (21)
2023 (18)
2020 (18)
2014 (17)
2021 (14)
2013 (14)
2018 (12)
2017 (10)
2016 (6)
2015 (3)

Classification

bacteria (13)

Modification

Not available (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (4)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
RIP-seq (1)

Release Date

2022 (101)
2021 (94)
2019 (89)
2023 (79)
2020 (75)
2024 (68)
2018 (66)
2025 (60)
2017 (60)
2016 (47)
2015 (46)
2014 (40)
2013 (35)
2011 (29)
2012 (21)
2010 (14)
2009 (10)
2026 (8)
2007 (8)
2008 (6)
2006 (5)
2004 (2)
2005 (1)
2002 (1)
1999 (1)
1998 (1)

Lab affiliation

CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (3)
Max-Planck-Institut für Biochemie Abt. Proteomics und Signaltransduktion Am Klopferspitz 18 D-82152 Martinsried (1)
PMB, North Carolina State University, USA (1)
Universidade de Vigo (1)
University of Washington, School of Aquatic and Fishery Sciences (1)
National Reference Laboratory for Aquatic Animal Deseases, Ministry of Fisheries and Aquaculture, Federal University of Minas Gerais (1)
School of Aquatic and Fishery Sciences, Roberts Lab, University of Washington, Seattle, Washington, USA (1)
The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong Special Administrative Region (1)
Section of Geobiology, The Globe Institute, Faculty of Health and Medical Sciences, University of Copenhagen (1)
University of Greifswald, Institut für Pharmazie/C_DAT, Pharmazeutische Biotechnologie, Felix-Hausdorff-Str. 3, 17489 Greifswald (1)
The University of Hong Kong (1)
Institute of Oceanology, Chinese Academy of Sciences (1)
University of Washington, Department of Genome Sciences (1)
1. College of Marine Science, Hainan University, Haikou 570228, China; 2. State Key Laboratory of Marine Resource Utilization in South China Sea, Haikou 570228, China) (1)
Genecology Research Centre, University of the Sunshine Coast (1)
Medical Malacology, Theodore Bilharz Research Institute, Giza, Egypt (1)
Plant and Food Research Institute New Zealand (1)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
university of edinburgh (1)

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Paratapes undulatus strain:bivalve

Paratapes undulatus strain:bivalve Transcriptome or Gene expression

PRJNA459966 | ENA

Single-cell RNA sequencing atlas from a bivalve larva enhances classical cell lineage studies

Here, we report on the gene expression profile of individual cells of the trochophore larva of the invasive freshwater bivalve Dreissena rostriformis as inferred from single cell RNA sequencing. We generated transcriptomes of 632 individual cells and identified seven transcriptionally distinct cell ...

ORGANISM(S): Dreissena rostriformis

2022-01-02 | GSE192624 | GEO

Mytilus galloprovincialis: development of female gonads

Transcriptional profiling of the mantle tissue across the four stages of female gonads development (winter peak) in a natural population of the marine mussel Mytilus galloprovincialis sampled in the Bizerta Lagoon, Tunisia, across November 2007 -March 2008. Background: Seasonal environmental change...

ORGANISM(S): Mytilus galloprovincialis

2011-06-06 | E-GEOD-23049 | biostudies-arrayexpress

Mytilus galloprovincialis: differences between male and female gene expression patterns in the digestive gland tissue

Direct comparison of the transcriptional patterns between male and female in the digestive gland of a natural population of the marine mussel Mytilus galloprovincialis sampled in the Bizerta Lagoon, Tunisia, across November 2007 -February March 2008 (four stages, winter peak). Background: Seasonal e...

ORGANISM(S): Mytilus galloprovincialis

2011-06-06 | E-GEOD-23051 | biostudies-arrayexpress

Mussel (Mytilus galloprovincialis) digestive gland tissue: gene expression profiles across an annual cycle

Transcriptional profiling of natural population of mussels (Mytilus galloprovincialis) -digestive gland tissue- comparing female individuals sampled in the Bizerta Lagoon, Tunisia, across May 2007 - April 2008. Background: Seasonal environmental changes may affect the physiology of Mytilus gallopro...

ORGANISM(S): Mytilus galloprovincialis

2011-06-06 | E-GEOD-22915 | biostudies-arrayexpress

Microencapsulated diets to improve bivalve shellfish aquaculture.

Not available

S-EPMC5717674 | biostudies-literature

Mytilus galloprovincialis: development of male gonads

Transcriptional profiling of the mantle tissue across the four stages of male gonads development (winter peak) in a natural population of the marine mussel Mytilus galloprovincialis sampled in the Bizerta Lagoon, Tunisia, across November 2007 -March 2008. Background: Seasonal environmental changes ...

ORGANISM(S): Mytilus galloprovincialis

2011-06-06 | E-GEOD-23050 | biostudies-arrayexpress

Bivalve samples

Galician mussels, cockles and clams subjected to a waterborne infection with Vibrio splendidus

PRJNA1227433 | ENA

Bivalvia sp.

Gomso-Bivalve larvae Metagenome

PRJNA373936 | ENA

Digging into bivalve miRNAomes: between conservation and innovation.

Not available

S-EPMC8059956 | biostudies-literature