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Unknown
(1240)
Proteomics
(152)
Genomics
(146)
Transcriptomics
(47)
Metabolomics
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Other
(3)
Models
(1)
Organisms
Escherichia coli BL21(DE3)
(26)
Escherichia coli
(19)
Homo sapiens
(7)
Drosophila melanogaster
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Mus musculus
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Escherichia coli BL21
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Escherichia coli str. K-12 substr. MG1655
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Saccharomyces cerevisiae
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Arabidopsis thaliana
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Escherichia coli K-12
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Vanderwaltozyma polyspora
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Bordetella sp. IITR-02
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Escherichia coli DH5[alpha]
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Escherichia coli BW25113
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Lactobacillus delbrueckii subsp. bulgaricus
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Sphingomonas sp. NM05
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freshwater sediment metagenome
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Cereibacter sphaeroides ATCC 17029
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Cereibacter sphaeroides ATCC 17025
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Escherichia coli C
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Rhodococcus jostii RHA1
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Escherichia coli str. K-12 substr. W3110
(1)
soil metagenome
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Escherichia coli O157:H7 str. EDL933
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Escherichia coli O157:H7 str. Sakai
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Pseudomonas putida
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Escherichia coli CFT073
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Escherichia coli W
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synthetic construct
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Glycine max
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Organisms
Escherichia coli
(40)
Escherichia coli BL21(DE3)
(33)
Escherichia coli BL21
(4)
mouse gut metagenome
(4)
Escherichia coli 'BL21-Gold(DE3)pLysS AG'
(1)
Pseudomonas aeruginosa BL21
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Cellulosimicrobium cellulans
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Bacteriophage sp.
(1)
unidentified
(1)
Brucella melitensis
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pig gut metagenome
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Bifidobacterium longum subsp. longum
(1)
Zea mays subsp. mays
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Escherichia coli str. K-12 substr. MG1655
(1)
Saccharomyces cerevisiae
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Caenorhabditis elegans
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soil metagenome
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human gut metagenome
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Homo sapiens
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Repository
ENA
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pride
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geo
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biostudies-arrayexpress
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Disease
Disease free
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Hypertrophic cardiomyopathy 9
(1)
Lipid metabolism disorder
(1)
Neuroblastoma
(1)
Visceral leishmaniasis
(1)
Technology Type
Mass Spectrometry
(128)
Shotgun proteomics
(48)
Bottom-up proteomics
(21)
Chemical cross-linking coupled with mass spectrometry proteomics
(21)
Gel-based experiment
(18)
Affinity purification coupled with mass spectrometry proteomics
(16)
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Top-down proteomics
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Mass spectrometry
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Immunopeptidomics
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SWATH MS
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NMR spectroscopy assay
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All-ion fragmentation
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HDMSE
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MSE
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Metaproteomics
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SRM/MRM
(1)
Instrument Platform
Illumina MiSeq
(3)
6550 iFunnel Q-TOF LC/MS
(3)
LTQ Orbitrap Velos
(3)
Liquid Chromatography MS - positive - reverse phase
(3)
Q Exactive HF Orbitrap
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6490 Triple Quadrupole LC/MS
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6546 Q-TOF LC/MS (Agilent instrument model)
(2)
TripleTOF 5600
(2)
LTQ Orbitrap
(2)
Tandem Gas Chromatography MS -
(2)
Direct infusion MS - negative
(2)
Liquid Chromatography MS - negative - reverse phase
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MinION
(1)
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(1)
NextSeq 500
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Impact HD|MS:1002667
(1)
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LTQ
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(1)
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SYNAPT G2-Si
(1)
Liquid Chromatography MS - negative -
(1)
Liquid Chromatography MS - positive -
(1)
GC-TOF-MS
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Tandem Gas Chromatography MS - positive
(1)
Liquid Chromatography MS - Negative (LC-MS (Negative))
(1)
Publication Date
2025
(31)
2024
(30)
2023
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2026
(25)
2022
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2020
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2019
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CHEBI ID
CHEBI:16708
(5)
CHEBI:17754
(5)
CHEBI:16000
(5)
CHEBI:16865
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CHEBI:17568
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CHEBI:15428
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CHEBI:17822
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CHEBI:17202
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CHEBI:22660
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CHEBI:18186
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CHEBI:15347
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CHEBI:24898
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CHEBI:30794
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CHEBI:28044
(3)
Metabolite Name
Ethanolamine
(4)
Glycine
(3)
Glycerol
(3)
Valine
(3)
Methionine
(3)
Lysine
(3)
Phenylalanine
(3)
Xanthine
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Inosine
(3)
Hypoxanthine
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Unknown 96
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Unknown 77
(2)
Unknown 26
(2)
Unknown 88
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Unknown 49
(2)
Unknown 38
(2)
Unknown 34
(2)
Unknown 74
(2)
Unknown 29
(2)
3-Hydroxyisobutyrate
(2)
Unknown 27
(2)
Unknown 30
(2)
4-Aminobutyrate
(2)
2-Hydroxyisovalerate
(2)
Pi-Methylhistidine
(2)
Isopropanol
(2)
2-Hydroxybutyrate
(2)
Fucose
(2)
3-Hydroxyisovalerate
(2)
N-Acetylaspartate
(2)
IsPrivate
False
(1)
First Public Date
2025
(17)
2026
(14)
2024
(13)
2023
(13)
2022
(12)
2020
(12)
2019
(10)
2015
(9)
2014
(9)
2021
(7)
2013
(7)
2017
(6)
2018
(5)
2016
(2)
Classification
bacteria
(81)
viruses
(1)
Modelling Approach
Constraint-based model
(1)
Study type
Transcription profiling by array
(9)
DNA-seq
(4)
Other
(3)
Proteomic profiling by array
(3)
RNA-seq of non coding RNA
(3)
ChIP-chip by tiling array
(2)
ChIP-chip by array
(2)
ChIP-seq
(2)
Comparative genomic hybridization by array
(1)
RNA-seq of coding RNA
(1)
Release Date
2022
(152)
2021
(123)
2023
(120)
2020
(107)
2019
(86)
2017
(81)
2024
(74)
2018
(69)
2016
(68)
2014
(64)
2015
(63)
2025
(59)
2013
(47)
2011
(43)
2012
(34)
2010
(17)
2026
(12)
2009
(9)
2008
(8)
2005
(7)
2006
(6)
2004
(5)
2007
(4)
1998
(4)
2003
(3)
1999
(2)
2002
(1)
2001
(1)
1997
(1)
Lab affiliation
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany
(4)
Shanghai Normal University,Shanghai,China
(3)
Medical University of Vienna, Max Perutz Labs, Dr. Bohr-Gasse 9, 1030 Vienna
(2)
Proteomics & Metabolomics Facility, University of Connecticut
(2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark
(2)
University of Washington Department of Chemistry
(2)
AIBN, University of Queensland
(1)
Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723
(1)
Asst. Professor (Department of Biotechnology), National Institute of Pharmaceutical Education & Research (NIPER), Sector-67, S.A.S. Nagar, Mohali-160062, Punjab. (India)
(1)
Australian Institute for Bioengineering and Nanotechnology, The University of Queensland
(1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany
(1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY
(1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Freising, TU Munich
(1)
Bavarian Center for Biomolecular Mass Spectrometry Gregor-Mendel-Strasse 4 85354 Freising Germany
(1)
BiOrbic, Center for the Bioeconomy, University College Dublin AND School of Biomolecular and Biomedical Sciences, University College Dublin.
(1)
CEA, DRF/JOLIOT/DMTS/SPI/Li2D, Laboratory “Innovative Technologies for Detection and Diagnostics
(1)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France
(1)
CSIR- Institute of Microbial Technology, Chandigarh
(1)
Cellular-Structural Biology Lab. IBR-CONICET
(1)
Center Biomol. Struct. & Organization Dept Chemistry & Biochemistry University of Maryland College Park, MD 20742-3360 USA
(1)
Center Biomol. Struct. & Organization Head, Immunity and Immune Evasion Lab Bachelor of Health and Biomedical Sciences Honours (BH058) Program Manager School of Health and Biomedical Sciences | RMIT University PO Box 71 | Bundoora 3083 | Australia
(1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK
(1)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany
(1)
Chemistry Department, King's College London
(1)
Chloé Martens, Ph.D Chercheuse Qualifiée - FRS.FNRS Group Leader Structure and Function of Biological Membranes - Chemistry Department chloemartenslab.com - sfmb.ulb.be Phone :+32 2 650 53 83 Université Libre de Bruxelles - Campus Plaine. Building BC, Room 1C4 110 - Boulevard du Triomphe, Accès 2 1050 Brussels - Belgium (lab head)
(1)
Department of Applied Chemistry, Institute of Natural Science, Global Center for Pharmaceutical Ingredient Materials, Kyung Hee University, Yongin, Republic of Korea. & Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, Republic of Korea.
(1)
Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague, Czech Republic
(1)
Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK; Department of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1PD, UK.
(1)
Department of Biochemistry, Western University, Canada
(1)
Department of Cancer Biology, University of Cincinnati College of Medicine
(1)
Tags
pathogen
(82)
pathogen:bacterium
(81)
xref:PubMed:41198744
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xref:PubMed:27681369
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xref:PubMed:34404790
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xref:PubMed:17112383
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xref:PubMed:21503758
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xref:PubMed:26319873
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xref:PubMed:32369182
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xref:PubMed:37344385
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xref:PubMed:20689833
(1)
xref:PubMed:37758954
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xref:PubMed:16952965
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xref:PubMed:36952342
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xref:PubMed:41011520
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xref:PubMed:37629141
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xref:PubMed:41556339
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xref:PubMed:33077799
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xref:PubMed:41203504
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xref:PubMed:35381200
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xref:PubMed:24061173
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xref:PubMed:32409946
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xref:PubMed:26090660
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xref:PubMed:33435393
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xref:PubMed:26494621
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xref:PubMed:30904393
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xref:PubMed:24034694
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xref:PubMed:36999618
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xref:PubMed:41444368
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Escherichia coli BL21(DE3)
Escherichia coli BL21(DE3) Genome sequencing
PRJNA203015
|
ENA
Cite
Escherichia coli BL21(DE3)
Escherichia coli BL21(DE3) Genome sequencing
PRJNA730534
|
ENA
Cite
Escherichia coli BL21
E.coli BL21 vs HLT013
PRJNA287288
|
ENA
Cite
Escherichia coli BL21 isolate:qingdao
Escherichia coli BL21 isolate:qingdao Genome sequencing
PRJNA1161001
|
ENA
Cite
Escherichia coli BL21(DE3)
Escherichia coli BL21(DE3) Transcriptome or Gene expression
PRJNA1282740
|
ENA
Cite
Escherichia coli BL21(DE3)
Escherichia coli BL21(DE3) Transcriptome or Gene expression
PRJNA952165
|
ENA
Cite
Escherichia coli BL21(DE3)
Adaptive laboratory evolved BL21(DE3) by phloroglucinol challenge
PRJNA1063523
|
ENA
Cite
Escherichia coli BL21(DE3)
Escherichia coli BL21(DE3) Genome sequencing and assembly
PRJNA679797
|
ENA
Cite
Escherichia coli strain:BL21 (DE3)
Escherichia coli BL21 (DE3) Resequencing
PRJNA520351
|
ENA
Cite
E.coli BL21 vs HLT013
Transcriptional profiling of E. coli strain comparing control BL21 with recombineered HLT013. HLT013 strains was derived from BL21 and capable of producing thymidine.
ORGANISM(S):
Escherichia coli BL21
2015-06-18
|
GSE69963
|
GEO
Cite
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