Black James J - OmicsDI

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Unknown (457)
Transcriptomics (16)
Genomics (14)
Proteomics (13)
Metabolomics (3)
Models (2)

Organisms

Homo sapiens (23)
Mus musculus (12)
Yersinia pestis (3)
Escherichia coli (2)
Staphylococcus aureus (1)
Treponema denticola (1)
Porphyromonas gingivalis (1)
Vibrio cholerae (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Penaeus (1)
Rattus rattus (1)

Repository

biostudies-arrayexpress (21)
EGA (11)
pride (11)
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Tissue

Cell culture (3)
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Adipose tissue (1)
Culture fluid (1)
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Muscle (1)

Disease

Cervix carcinoma (1)
Coronavirus infectious disease (1)

Technology Type

Mass Spectrometry (11)
Affinity purification coupled with mass spectrometry proteomics (4)
Shotgun proteomics (4)
Bottom-up proteomics (3)
Mass spectrometry (2)
Data-dependent acquisition (2)
NMR spectroscopy (1)

Instrument Platform

GenePix 4000B [Axon Instruments] (2)
Illumina MiSeq (2)
Q Exactive (2)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Bruker (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)

Publication Date

2014 (5)
2024 (4)
2017 (4)
2022 (4)
2018 (3)
2013 (3)
2026 (3)
2019 (2)
2015 (2)
2010 (2)
2006 (2)
2025 (1)
2012 (1)
2008 (1)
2023 (1)
2021 (1)

CHEBI ID

CHEBI:17368 (3)
CHEBI:25017 (3)
CHEBI:27897 (3)
CHEBI:28044 (3)
CHEBI:7916 (3)
CHEBI:15741 (2)
CHEBI:16449 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16750 (2)
CHEBI:16811 (2)
CHEBI:17230 (2)
CHEBI:17306 (2)
CHEBI:17568 (2)
CHEBI:17821 (2)
CHEBI:17992 (2)
CHEBI:18237 (2)
CHEBI:18257 (2)
CHEBI:22660 (2)
CHEBI:23399 (2)
CHEBI:24898 (2)
CHEBI:25094 (2)
CHEBI:27266 (2)
CHEBI:28300 (2)
CHEBI:28794 (2)
CHEBI:28997 (2)
CHEBI:30772 (2)
CHEBI:545959 (2)
CHEBI:90355 (2)
CHEBI:10002 (1)

Metabolite Name

Adenine (2)
Alanine (2)
Deoxyinosine (2)
Glutamine (2)
Guanosine (2)
Homocysteine (2)
Hypoxanthine (2)
Isoleucine (2)
Leucine (2)
Lysine (2)
Maltose (2)
Methionine (2)
Ornithine (2)
Pantothenate (2)
Phenylalanine (2)
Sucrose (2)
Thymine (2)
Tryptophan (2)
Uracil (2)
Valine (2)
(-)-Epigallocatechin (1)
(-)-Epigallocatechin I (1)
(1-Ribosylimidazole)-4-acetate (1)
(5Z,7E)-(1S,3R)-23,24-dinor-9,10-seco-5,7,10(19)-cholatriene-1,3-diol (1)
(5Z,7E)-(1S,3R)-24,24-difluoro-26,27-dimethyl-9,10-seco-5,7,10(19)-cholestatrien-1,3,25-triol (1)
(5Z,7E)-(3S)-6,19-ethano-9,10-seco-5(10),7-cholestadiene-3,25-diol (1)
1,5-Anhydrosorbitol (1)
1-deoxy-sphinganine (1)
2'-O-Methylodoratol (1)
2,2-dimethylsuccinic acid (1)

IsPrivate

False (2)

Submitter Keywords

Ersilia (2)
FAIR-AIML (2)
Machine Learning Model (2)

Modelling Approach

Computational model (2)

Study type

Transcription profiling by array (9)
Comparative genomic hybridization by array (3)
RNA-seq of coding RNA (3)
ChIP-seq (2)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (57)
2023 (55)
2021 (50)
2024 (49)
2025 (42)
2020 (29)
2016 (29)
2014 (22)
2015 (21)
2019 (19)
2018 (19)
2011 (18)
2017 (17)
2013 (13)
2012 (10)
2010 (8)
2026 (8)
2008 (5)
2009 (3)
2006 (2)
2007 (2)

Lab affiliation

Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (1)
Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA (1)
King’s College London British Heart Foundation Centre, School of Cardiovascular Medicine and Sciences, James Black Centre, 125 Coldharbour Lane, London SE5 9NU, United Kingdom (1)
MRC Investigator MRC Protein Phosphorylation & Ubiquitylation Unit Sir James Black Centre, School of Life Sciences University of Dundee, Dundee DD1 5EH, UK.   Phone: ++44 1382 386330 (1)
MRC Protein Phosphorylation & Ubiquitylation Unit School of Life Sciences Sir James Black Centre University of Dundee Dundee DD1 5EH, UK. (1)
MRC Protein Phosphorylation and Ubiquitylation Unit School of Life Sciences, University of Dundee Sir James Black Centre Dundee, DD1 5EH United Kingdom (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, The Sir James Black Centre, University of Dundee, United Kingdom (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, Sir James Black Centre, Dow Street, School of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK (1)
Molecular Allergy Research Laboratory, Centre for Sustainable Tropical Fisheries and Aquaculture (CSTFA), College of Science and Engineering, James Cook University, Douglas, QLD 4811, Australia Tropical Futures Institute, James Cook University, 149 Sims Drive, Singapore 387380, Singapore (1)
Professor Gopal Sapkota MRC Investigator MRC Protein Phosphorylation & Ubiquitylation Unit Sir James Black Centre School of Life Sciences University of Dundee Dundee DD1 5EH  United Kingdom   (1)
School of Life Sciences, University of Dundee Division of Biological Chemistry & Drug Discovery James Black Centre Dow Street, Dundee, DD1 5EH United Kingdom (1)

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Comparative proteomic analysis of black tiger prawn (Penaeus monodon) and white leg prawn (Litopenaeus vannamei) allergen profiles

Shellfish allergy is a major global health concern, with prawns being among the most common elicitors of allergic reactions. This project describes a comparative allergenomic analysis of the most widely consumed prawn species worldwide: black tiger prawn (Penaeus monodon) and white leg prawn (Litop...

ORGANISM(S): Penaeus

2026-09-07 | PXD072307 | Pride

Top 10 priorities for Sexual Violence and Abuse Research: indings of the James Lind Alliance Sexual Violence Priority Setting Partnership.

Not available

S-EPMC9944274 | biostudies-literature

A Whole Genome Association Search for Type 2 Diabetes Genes in African Americans

Over 2.8 million African Americans have type 2 diabetes mellitus (T2DM). This represents approximately 13% of the African American population and a significant proportion of the 21 million Americans living with diabetes. On average, an African American individual is twice as likely to have T...

phs000140.v1.p1 | EGA

Little red dots as young supermassive black holes in dense ionized cocoons.

Not available

S-EPMC12804088 | biostudies-literature

Lessons learnt from assembling screening libraries for drug discovery for neglected diseases.

Not available

S-EPMC2628535 | biostudies-literature

Application of HPLC-PDA-MS metabolite profiling to investigate the effect of growth temperature and day length on blackcurrant fruit

INTRODUCTION: Blackcurrant (Ribes nigrum L.) is an excellent example of a “super fruit” with potential health benefits. Both genotype and cultivation environment are known to affect the chemical composition of blackcurrant, especially ascorbic acid and various phenolic compounds. Environmental condi...

2019-02-12 | MTBLS773 | MetaboLights

Netazepide, a gastrin/CCK2 receptor antagonist, causes dose-dependent, persistent inhibition of the responses to pentagastrin in healthy subjects.

Not available

S-EPMC3853528 | biostudies-literature

Bathymetric evolution of black corals through deep time.

Not available

S-EPMC10547549 | biostudies-literature

Robust fast-switching black electrochromic windows based on solution-processed n-doped transparent organic conductor.

Not available

S-EPMC12808311 | biostudies-literature

The interplay of race, socioeconomic status and neighborhood residence upon birth outcomes in a high black infant mortality community.

Not available