Bock S S - OmicsDI

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Unknown (885)
Proteomics (76)
Transcriptomics (33)
Genomics (14)
Metabolomics (10)
Other (1)

Organisms

Homo sapiens (59)
Mus musculus (26)
Arabidopsis thaliana (13)
Escherichia coli (2)
Nicotiana tabacum (2)
Spodoptera frugiperda (2)
Haemophilus influenzae (1)
Chlamydomonas reinhardtii (1)
Oryctolagus cuniculus (1)
Caulobacter vibrioides NA1000 (1)
Influenza A virus (A/Viet Nam/1203/2004(H5N1)) (1)
Influenza B virus (B/Memphis/13/2003) (1)
Lacrimispora saccharolytica (1)
Oenothera elata (1)
Oryza sativa (1)
Porphyridium purpureum (1)
Rattus norvegicus (1)
Saccharomyces cerevisiae (1)
Sarcophilus harrisii (1)
Sporothrix sp. (1)
Staphylococcus aureus (1)
Thermochaetoides thermophila (1)
Toxoplasma gondii RH (1)
Zea mays (1)

Organisms

Arabidopsis thaliana (1)

Repository

pride (68)
biostudies-arrayexpress (42)
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EGA (4)
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jPOST (1)
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ENA (1)

Tissue

Cell culture (15)
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Disease

Chronic myeloid leukemia (2)
Disease free (2)
Hepatocellular carcinoma (2)
Not Available (1)
Acute myeloid leukemia (1)
Breast cancer (1)
Influenza (1)
Leukemia (1)
Myeloproliferative neoplasm (1)

Technology Type

Mass Spectrometry (68)
Shotgun proteomics (39)
Bottom-up proteomics (16)
Affinity purification coupled with mass spectrometry proteomics (10)
Mass spectrometry (9)
Data-dependent acquisition (6)
Gel-based experiment (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
SRM/MRM (2)
SWATH MS (2)
Mass spectrometry assay (1)
HDMSE (1)
MSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - direct infusion (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
LTQ-Orbitrap (2)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
Instrument (1)
Q Exactive (1)
Q Exactive HF (1)
Diode array detection MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2021 (19)
2023 (12)
2015 (11)
2025 (11)
2014 (10)
2022 (9)
2020 (8)
2019 (8)
2016 (7)
2013 (7)
2011 (6)
2005 (4)
2024 (4)
2012 (3)
2026 (3)
2010 (2)
2017 (2)
2018 (1)

UNIPROT ID/AC

10116.ENSRNOP00000001467 (2)
10116.ENSRNOP00000004127 (2)
10116.ENSRNOP00000007070 (2)
10116.ENSRNOP00000007645 (2)
10116.ENSRNOP00000010798 (2)
10116.ENSRNOP00000019755 (2)
10116.ENSRNOP00000028732 (2)
10116.ENSRNOP00000031360 (2)
10116.ENSRNOP00000050143 (2)
10116.ENSRNOP00000052803 (2)
10116.ENSRNOP00000054637 (2)
10116.ENSRNOP00000059667 (2)
10116.ENSRNOP00000060017 (2)
10116.ENSRNOP00000061650 (2)
10116.ENSRNOP00000064401 (2)
10116.ENSRNOP00000064646 (2)
10116.ENSRNOP00000065372 (2)
10116.ENSRNOP00000065625 (2)
10116.ENSRNOP00000065704 (2)
10116.ENSRNOP00000066126 (2)
10116.ENSRNOP00000066155 (2)
10116.ENSRNOP00000066428 (2)
10116.ENSRNOP00000067288 (2)
10116.ENSRNOP00000067711 (2)
1433B_RAT (2)
1433E_RAT (2)
1433F_RAT (2)
1433G_RAT (2)
1433T_RAT (2)
1433Z_RAT (2)

CHEBI ID

CHEBI:15414 (2)
CHEBI:16335 (2)
CHEBI:16474 (2)
CHEBI:16675 (2)
CHEBI:16750 (2)
CHEBI:17154 (2)
CHEBI:17596 (2)
CHEBI:17687 (2)
CHEBI:27748 (2)
CHEBI:102265 (1)
CHEBI:1156 (1)
CHEBI:133316 (1)
CHEBI:133365 (1)
CHEBI:138560 (1)
CHEBI:138872 (1)
CHEBI:15346 (1)
CHEBI:15347 (1)
CHEBI:15351 (1)
CHEBI:15366 (1)
CHEBI:15402 (1)
CHEBI:15422 (1)
CHEBI:15424 (1)
CHEBI:15428 (1)
CHEBI:15435 (1)
CHEBI:15596 (1)
CHEBI:15603 (1)
CHEBI:15610 (1)
CHEBI:15627 (1)
CHEBI:15725 (1)
CHEBI:15727 (1)

Metabolite Name

Accurate mass (2)
(+)-Neomenthol (1)
(-)-Medicocarpin (1)
(10S)-Juvenile hormone III acid diol (1)
(10S)-Juvenile hormone III diol (1)
(1R)-Hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene (1)
(1R,2S)-Naphthalene 1,2-oxide (1)
(2-Naphthyl)methanol (1)
(22R,23R)-22,23-Dihydroxy-campest-4-en-3-one (1)
(2S)-2-{[1-(R)-Carboxyethyl]amino}pentanoate (1)
(2S,3S)-3-Methylphenylalanine (1)
(3R,2'S)-Myxol 2'-alpha-L-fucoside (1)
(3S,2'S)-4-Ketomyxol 2'-alpha-L-fucoside (1)
(4E)-2-Oxohexenoic acid (1)
(9Z)-Hexadecenoic acid (1)
(9Z)-Octadecenoic acid (1)
(Indol-3-yl)acetamide (1)
(R)-(Homo)2-citrate (1)
(R)-10-Hydroxystearate (1)
(R)-Mandelamide (1)
(R)-Mandelate (1)
(S)-DNPA (1)
(S)-Malate (1)
(Z)-3-Hexen-1-ol acetate (1)
(Z)-3-Peroxyaminoacrylate (1)
1,1'-Dihydroxy-1,1',2,2'-tetrahydrolycopene (1)
1,2-Dihydronaphthalene-1,2-diol (1)
1,2-Dihydroxy-8-methylnaphthalene (1)
1,3-Diaminopropane (1)
1,8-Cineole (1)

First Public Date

2014 (1)

Modification

15.994915 (7)
-17.026549 (6)
42.010565 (6)
57.021464 (5)
45.029395 (4)
6.020129 (4)
0.984016 (2)
10.008269 (2)
+3amu) (1)
4x(15)N labeled L-arginine (1)
56.026215 (1)
58.005479 (1)
59.036279 (1)
73.016378 (1)

Study type

Transcription profiling by array (17)
RNA-seq of coding RNA (8)
Methylation profiling by high throughput sequencing (6)
ChIP-seq (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Genotyping by array (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (119)
2022 (103)
2020 (90)
2023 (86)
2024 (82)
2025 (75)
2018 (56)
2017 (56)
2019 (53)
2015 (34)
2016 (30)
2014 (24)
2013 (22)
2011 (16)
2012 (14)
2010 (14)
2009 (14)
2026 (11)
2006 (10)
2005 (5)
2008 (5)
2007 (2)
2004 (2)
2003 (1)
2002 (1)
2001 (1)
2000 (1)

Lab affiliation

Biochemistry (4)
European Molecular Biology Laboratory (3)
Biozentrum, University of Basel, 4056 Basel, Switzerland (2)
Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna (2)
Max Perutz Labs, Vienna Biocenter Campus (VBC), Dr.-Bohr-Gasse 9, 1030, Vienna, Austria. (2)
University of Basel, Biozentrum, Klingelbergstrasse 50/70, CH-4056 Basel, Switzerland (2)
., Department of Laboratory Medicine, Medical University of Vienna, 18-20 Währinger Gürtel, 1090 Vienna, Austria (1)
1) Department II of Internal Medicine and Center for Molecular Medicine Cologne, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany 2) CECAD, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany (1)
1Institute for Genetics, University of Cologne, Cologne, Germany. 2Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, Germany. 3Center for Molecular Medicine (CMMC), University of Cologne, Cologne, Germany. (1)
Alexander Schmidt, Biozentrum, University of Basel Spitalstrasse 41, CH-4056 Basel, Switzerland Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch (1)
Alexander Schmidt, Biozentrum, University of Basel, Spitalstrasse 41, CH-4056 Basel, Switzerland, Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch (1)
Bioanalytical Mass Spectrometry, Max Planck Institute for Multidisciplinary Sciences, Goettingen, Germany (1)
CECAD Research Center, Institute for Genetics, University of Cologne, 50931 Cologne, Germany (1)
CECAD Research Center, Institute for Genetics, University of Cologne, Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany (1)
CECAD-Cluster of Excellence, University of Cologne, Joseph-Stelzmann-Str. 26, D-50931, Cologne, Germany; Department II of Internal Medicine, Faculty of Medicine and University Hospital Cologne, University of Cologne, Kerpener Str. 62, D-50937, Cologne, Germany; Center for Molecular Medicine Cologne (CMMC), University of Cologne, Robert-Koch-Str. 21, D-50931, Cologne, Germany (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Christian Doppler Laboratory for Chemical Epigenetics and Anti-Infectives Lazarettgasse 14, AKH BT 25.3 1090 Vienna, Austria (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Lazarettgasse 14, AKH BT 25.3 1090 Vienna, Austria (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Lazarettgasse 14 AKH BT 25.3 1090 Vienna, Austria (1)
CeMM, Research Center for Molecular Medicine, Austrian Academy of Sciences, Austria (1)
Cell Biology and Physiology, University of North Carolina at Chapel Hill, North Carolina, USA (1)
Center for Plant Molecular Biology (ZMBP) Plant Physiology University of Tübingen Tübingen Germany (1)
Center for Synthetic Microbiology & Department of Chemistry, Marburg University,Hans-Meerwein-Straße 4, 35043 Marburg, Germany (1)
Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, 50931 Cologne, Germany; Institute for Mitochondrial Diseases and Aging, Medical Faculty, University of Cologne, D-50931 Cologne, Germany; Center for Molecular Medicine (CMMC), University of Cologne, 50931 Cologne, Germany (1)
Department of Growth and Development, Biozentrum, University of Basel, Basel, Switzerland (1)
Department of Growth and Development, Biozentrum, University of Basel, Switzerland (1)
Department of Molecular Neurosciences, Center for Brain 1099 Research, Medical University of Vienna, Vienna, Austria (1)
Department of Structural and Computational Biology, Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna, Austria (1)
Derpartmen of Dermatology Medical University of Vienna (1)
EDyP (1)
EMBL, SCB, Heidelberg, Germany (1)

Tags

xref:PubMed:24151292 (1)

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S/N/O-Enriched Carbons from Polyacrylonitrile-Based Block Copolymers for Selective Separation of Gas Streams.

Not available

S-EPMC10819996 | biostudies-literature

N-Substituted Nipecotic Acids as (S)-SNAP-5114 Analogues with Modified Lipophilic Domains.

Not available

S-EPMC7317212 | biostudies-literature

Protein methionine sulfoxide dynamics in Arabidopsis thaliana under oxidative stress.

Data from ProteomeXchange, PXD ID: PXD001286. Experiment: TP3_MetCofr, file: folder summary. Published as part of Mol Cell Proteomics. 2015 Feb 18 . From the Abstract: {{i}} ... Methionine oxidation, studied here, is a reversible posttranslational modification, which is emerging as a mechanism by w...

ORGANISM(S): Ath1

GPM32320014280 | GPMDB

Resource Reanalysis

Increased expression of BRD4 isoforms long (BRD4-L) and short (BRD4-S) promotes chemotherapy resistance in high-grade serous ovarian carcinoma.

Not available

S-EPMC10496930 | biostudies-literature

On-Surface Carbon Nitride Growth from Polymerization of 2,5,8-Triazido-s-heptazine.

Not available

S-EPMC10500973 | biostudies-literature

Carbon and amide detect backbone assignment methods of a novel repeat protein from the staphylocoagulase in S. aureus.

Not available

S-EPMC6057470 | biostudies-literature

A New Mediator of Singlet Oxygen Responses in Chlamydomonas and Arabidopsis

We identified a small zinc finger protein, MBS, as a new mediator of singlet oxygen responses in Chlamydomonas and Arabidopsis. MBS is required for induction of singlet oxygen-dependent gene expression and, upon oxidative stress, accumulates in distinct granules in the cytosol of Arabidopsis cells....

ORGANISM(S): Arabidopsis thaliana

2014-04-21 | E-GEOD-49596 | biostudies-arrayexpress

Durable immunity to SARS-CoV-2 in both lower and upper airways achieved with a gorilla adenovirus (GRAd) S-2P vaccine in non-human primates.

Not available

S-EPMC10705562 | biostudies-literature

Neuritogenic and neuroprotective properties of peptide agonists of the fibroblast growth factor receptor.

Not available

S-EPMC2904917 | biostudies-literature

Endothelial LAT1 (SLC7A5) Mediates S-Nitrosothiol Import and Modulates Respiratory Sequelae of Red Blood Cell Transfusion In Vivo.

Not available

S-EPMC11199053 | biostudies-literature