Bordetella - OmicsDI

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Unknown (1063)
Genomics (614)
Transcriptomics (96)
Proteomics (52)
Models (5)
Metabolomics (3)
Other (1)

Organisms

Bordetella pertussis (35)
Bordetella bronchiseptica (28)
Mus musculus (25)
Homo sapiens (14)
Respiratory syncytial virus (3)
Streptococcus sp. 'group B' (3)
Yellow fever virus (3)
Onchocerca volvulus (3)
Dengue virus (3)
Human immunodeficiency virus (3)
Chikungunya virus (3)
Zika virus (3)
Plasmodium falciparum (3)
Mycobacterium tuberculosis (3)
Staphylococcus aureus (3)
Bordetella parapertussis (2)
Bordetella holmesii (2)
Bordetella sp. IITR-02 (2)
Bordetella pertussis Tohama I (2)
Influenza A virus (1)
Haemophilus influenzae R2866 (1)
Sphingomonas sp. NM05 (1)
freshwater sediment metagenome (1)
Bordetella pertussis B1920 (1)
Bordetella pertussis B1917 (1)
Escherichia coli BL21 (1)
Rhodococcus jostii RHA1 (1)
Bordetella hinzii (1)
Escherichia coli DH5[alpha] (1)
soil metagenome (1)

Organisms

Bordetella bronchiseptica (134)
Bordetella pertussis (86)
Mus musculus (19)
Bordetella avium (13)
Bordetella hinzii (8)
Bordetella pseudohinzii (8)
Bordetella trematum (7)
Bordetella (7)
Bordetella petrii (6)
Bordetella pertussis Tohama I (4)
Bordetella bronchiseptica RB50 (4)
Bordetella holmesii (4)
Bordetella parapertussis (4)
Bordetella pertussis CS (2)
Bordetella holmesii ATCC 51541 (2)
Bordetella holmesii 44057 (2)
Bordetella pertussis H973 (2)
Bordetella bronchiseptica KM22 (2)
Bordetella bronchiseptica MO211 (2)
Bordetella hinzii LMG 13501 (1)
Bordetella avium 197N (1)
Bordetella parapertussis 12822 (1)
Bordetella bronchiseptica M85/00/2 (1)
Bordetella bronchiseptica M435/02/3 (1)
Advenella kashmirensis WT001 (1)
Bordetella sp. NGBO (1)
Bordetella pertussis CS-1 (1)
Bordetella sp. LUAb4 (1)
Bordetella trematum CCUG 13902 (1)
Bordetella hinzii ATCC 51730 (1)

Repository

ENA (608)
biostudies-arrayexpress (63)
pride (41)
geo (40)
Cell Collective (3)
MassIVE (3)
MetaboLights (3)
PAXDB (3)
BioModels (2)
EGA (2)
GPMDB (1)
iProX (1)
jPOST (1)

Tissue

Cell culture (8)
Prokaryotic cell (4)
Spleen (3)
Primary cell (2)
Bacterial protein (1)
Bone marrow (1)
Bronchial epithelial cell (1)
Bronchial epithelium (1)
Dendritic cell (1)
Epithelial cell (1)
Erythrocyte (1)
Liver (1)
Macrophage (1)
Nasal cavity epithelium (1)

Disease

Pertussis (6)
Bordetella parapertussis whooping cough (5)
Bordetella pertussis infected (1)
Bordetella pertussis inoculated (1)
Not Available (1)
Brucella canis brucellosis (1)
Diphtheria (1)
Tetanus (1)

Technology Type

Mass Spectrometry (41)
Shotgun proteomics (29)
Bottom-up proteomics (8)
Mass spectrometry (3)
Data-independent acquisition (3)
NMR spectroscopy (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)
Gel-based experiment (1)
Top-down proteomics (1)

Instrument Platform

Scanning hardware (15)
GenePix 4000B [Axon Instruments] (5)
NextSeq 500 (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Illumina NovaSeq 6000 (1)
Instrument (1)
LTQ Orbitrap Velos (1)
Q Exactive (1)
SolariX (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (16)
2020 (15)
2006 (14)
2023 (13)
2018 (9)
2008 (9)
2026 (7)
2016 (7)
2012 (7)
2011 (7)
2007 (7)
2021 (7)
2017 (7)
2014 (6)
2013 (6)
2009 (4)
2024 (4)
2015 (3)
2010 (3)
2022 (2)
2005 (2)
2019 (2)

UNIPROT ID/AC

ACCA_BORPE (2)
ACP_BORPE (2)
AMPA_BORPE (2)
APT_BORPE (2)
ARGB_BORPE (2)
ARGC_BORPE (2)
ARGD1_BORPE (2)
ARGD2_BORPE (2)
ARGJ_BORPE (2)
ARLY_BORPE (2)
AROC_BORPE (2)
AROQ_BORPE (2)
ASSY_BORPE (2)
ATPA_BORPE (2)
ATPB_BORPE (2)
ATPD_BORPE (2)
ATPF_BORPE (2)
ATPG_BORPE (2)
BAMB_BORPE (2)
BFRD_BORPE (2)
BRKA_BORPE (2)
BVGA_BORPE (2)
BVGS_BORPE (2)
CATA_BORPE (2)
CH10_BORPE (2)
CH60_BORPE (2)
CLPB_BORPE (2)
CLPP_BORPE (2)
CLPX_BORPE (2)
COAD_BORPE (2)

CHEBI ID

CHEBI:75090 (1)
CHEBI:16016 (1)
CHEBI:17172 (1)
CHEBI:33508 (1)
CHEBI:17822 (1)
CHEBI:26271 (1)
CHEBI:25094 (1)
CHEBI:16856 (1)
CHEBI:18237 (1)
CHEBI:16040 (1)
CHEBI:22660 (1)
CHEBI:22653 (1)
CHEBI:27570 (1)
CHEBI:30751 (1)
CHEBI:18186 (1)
CHEBI:26986 (1)
CHEBI:22652 (1)
CHEBI:16811 (1)
CHEBI:17790 (1)
CHEBI:28300 (1)
CHEBI:16236 (1)
CHEBI:17824 (1)
CHEBI:16708 (1)
CHEBI:17748 (1)
CHEBI:24898 (1)
CHEBI:25017 (1)
CHEBI:15428 (1)
CHEBI:15741 (1)
CHEBI:28044 (1)
CHEBI:17242 (1)

Metabolite Name

Palmitic Acid (2)
All-cis-4,7,10,13,16,19-Docosahexaenoic Acid (1)
15-Nervonic acid (1)
All-cis-7,10,13,16,19-Docosapentaenoic acid (1)
All-cis-4,7,10,13,16-Docosapentaenoic Acid (1)
Tricosanoic Acid (1)
Cis,cis-13,16-Docosadienoic Acid (1)
Trans-13-Docosenoic acid (1)
All-cis-5,8,11,14,17-Eicosapentaenoic Acid (1)
Behenic Acid (1)
All-cis-5,8,11,14-Eicosatetraenoic Acid (1)
Cis,cis,cis-8,11,14-Linolenic Acid (1)
Heneicosanoic Acid (1)
Cis-11-Eicosenoic Acid (1)
Cis-11-Octadecenoic acid (1)
Cis-6-Octadecenoic acid (1)
Trans-11-Octadecenoic acid (1)
6-Octadecenoic acid (1)
Cis-10-Heptadecenoic Acid (1)
Cis-10-Pentadecenoic Acid (1)
Trans-10-pentadecenoic acid (1)
Tridecylic Acid (1)
Decanoic Acid (1)
Stearic Acid (1)
Palmitelaidic acid (1)
Linoelaidic acid (1)
Myristelaidic acid (1)
Undecanoic Acid (1)
Linolenic acid (1)
Gamma-Linolenic acid (1)

IsPrivate

False (2)

First Public Date

2013 (135)
2026 (94)
2025 (75)
2014 (50)
2024 (38)
2023 (31)
2020 (29)
2017 (28)
2021 (26)
2018 (24)
2019 (23)
2022 (18)
2016 (14)
2015 (11)
2012 (9)
2010 (3)

Classification

bacteria (448)
viruses (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (42)
Comparative genomic hybridization by array (15)
RNA-seq of coding RNA (3)
Unknown experiment type (1)
ChIP-chip by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (102)
2023 (85)
2025 (85)
2022 (78)
2024 (67)
2020 (67)
2019 (57)
2015 (54)
2017 (53)
2018 (51)
2016 (48)
2014 (45)
2012 (34)
2006 (34)
2013 (33)
2011 (28)
2009 (28)
2010 (27)
2008 (22)
2007 (21)
2005 (19)
2001 (13)
1998 (13)
2000 (12)
2026 (11)
2004 (11)
2002 (11)
2003 (9)
1999 (6)
1996 (1)

Lab affiliation

Institute of Microbiology of the CAS, v. v. i. (4)
University Medicine Greifswald (4)
CEA, DRF, IBiTec-S, SPI, Li2D, Laboratory "Innovative technologies for Detection and Diagnostics" (3)
Institute of Microbiology - BioCeV, Academy of Sciences of the Czech Republic (2)
Zhejiang Academy of Agricultural Sciences (2)
Academy of Sciences of the Czech Republic Institute of Microbiology, v.v.i. Prague, Czech Republic (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
CSO, Bioaster, France (1)
Czech Academy of Sciences Institute of Microbiology Laboratory of Post-Transcriptional Control of Gene Expression (1)
Department Biologie, Professur für Mikrobiologie (lab head) (1)
Department of Functional Genomics, Institute for Genetics and Functional Genomics, University Medicine Greifswald, Germany (1)
Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences (1)
Institute of Animal Husbandry and Veterinary Sciences, Zhejiang Academy of Agricultural Sciences (1)
Institute of Biomedicine University of Turku Kiinamyllynkatu 10 FI-20520 TURKU Finland (1)
Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic (1)
Institute of Microbiology of the Czech Academy of Sciences, v.v.i., Videnska 1083, 142 20 Prague, Czech Republic (1)
Istituto zooprofilattico dell'abruzzo e del molise (1)
Laboratory of Infection Biology Institute of Microbiology, v.v.i. The Czech Academy of Sciences (1)
Laboratory of Infection Biology, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic (1)
Laboratory of Molecular Biology of Bacterial Pathogens, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic (1)
Laboratory of Molecular Biology of Bacterial Pathogens, Institute of Microbiology, Czech Academy of Sciences (1)
Laboratory of Post-Transcriptional Control of Gene Expression Institute of Microbiology, v.v.i. Academy of Sciences of the Czech Republic Videnska 1083; Prague; Czech Republic Tel: +420 296 442 507 (1)
Laboratory of Post-Transcriptional Control of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Czech Republic (1)
Laboratory of Post-Transcriptional Control of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, v.v.i. (1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales (1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales, Australia (1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales, Australia (lab head) (1)
The Institute of Microbiology of the Czech Academy of Sciences Head of Group Protein Structure Characterization by Advanced Mass Spectrometry (1)
Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, US41 – UMS 2014 – PLBS, F-59000 Lille, France (1)
University Medicine Greifswald, Germany (1)

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Bordetella bronchiseptica RB50 iron limitation 2

Bordetella bronchiseptica RB50 was shifted from iron replete to either iron depleted or iron replete media, and samples were taken post shift for transcriptional profiling

ORGANISM(S): Bordetella bronchiseptica

2011-09-08 | E-MEXP-3076 | biostudies-arrayexpress

Deep longitudinal multi-omics analysis of Bordetella pertussis cultivated in bioreactors highlights medium starvations and transitory metabolisms, associated to vaccine antigen biosynthesis variations and global virulence regulation

Bordetella pertussis is the bacterial causative agent of whooping cough, a serious respiratory illness. An extensive knowledge on its virulence regulation and metabolism is a key factor to ensure pertussis vaccine manufacturing process robustness. The aim of this study was to refine our ...

2023-02-21 | MTBLS5762 | MetaboLights

Released palmitic acid–mediated TLR4/NF-κB activation enhances the virulence of Bordetella pertussis MT28 lineage

Whooping cough resurged globally despite the widespread vaccination. A macrolide-resistant (MR) lineage carrying the high-virulence ptxP3 allele, ptxP3 MR-MT28 (MT28), has imposed a substantial burden on pertussis epidemics, while the underlying factors driving its prevalence remain unclear. Thus...

2025-12-21 | MTBLS13545 | MetaboLights

Comparative genomic hybridization of 12 Bordetella holmesii strains compared to Bordetella pertussis

Comparative genome hybridization (CGH) of a sample of 12 Bordetella holmesii strains compared to Bordetella pertussis Tohama I

ORGANISM(S): Bordetella pertussis

2006-06-30 | E-TABM-55 | biostudies-arrayexpress

Palmitic acid-mediated TLR4/NF-κB activation drives the pathogenicity of hypervirulent Bordetella pertussis MT28 lineage

2025-06-21 | MTBLS12625 | MetaboLights

Transcriptomics analysis of the Bordetella holmesii response to human serum exposure

We performed RNA-Seq transcriptomics analyses of the Bordetella holmesii type strain ATCC 51541T under in vitro growth conditions that mimic exposure to the human bloodstream. We sequenced 3 biological replicates of each of the following conditions of exposure to heat-inactivated human serum: 5% ser...

ORGANISM(S): Bordetella holmesii

2014-03-28 | E-GEOD-56290 | biostudies-arrayexpress

Comparative genomic hybridization of Bordetella bronchiseptica, B. pertussis, and B. parapertussis strains

Comparative genome hybridization (CGH) of sample of 58 Bordetella bronchiseptica, B. pertussis, and B. parapertussis strains selected to span four clusters as defined by MLST.

ORGANISM(S): Bordetella pertussis

2005-12-31 | E-TABM-32 | biostudies-arrayexpress

Comparative genomic hybridization of 71 Bordetella parapertussis strains isolated from humans and sheep

Comparative genomic hybridization (CGH) of 71 Bordetella parapertussis strains isolated from either humans or sheep, and 1 B. bronchiseptica strain isolated from a rabbit

ORGANISM(S): Bordetella bronchiseptica

2006-09-04 | E-TABM-94 | biostudies-arrayexpress

Transcription profiling of lungs of C3H mice infected with Bordetella and mock control

Transcriptional responses in lungs of C3H mice infected with Bordetella and mock control

ORGANISM(S): Mus musculus

2007-05-11 | E-TABM-266 | biostudies-arrayexpress

Bordetella pertussis CGH

CGH analysis of 100 Bordetella pertussis strains

ORGANISM(S): Bordetella pertussis

2010-10-01 | E-TABM-809 | biostudies-arrayexpress

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