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TranscriptomicsGenome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis [RNA-Seq]
BRAHMA (BRM) is a conserved SWI/SNF-type chromatin remodeling ATPase implicated in many key nuclear events. Histone H3 Lysine 27 (H3K27) demethylases specifically remove the repressive histone mark, trimethylation of H3K27 (H3K27me3). Both proteins are thought to play active roles in regulating gene...
ORGANISM(S): Arabidopsis thaliana 
2016-03-28 | E-GEOD-72260 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Arabidopsis seedlings mutant for essp3 and brm
Synthesis and accumulation of seed storage proteins (SSPs) is an important aspect of the seed maturation program. Genes encoding SSPs are specifically and highly expressed in the seed during maturation. However, the mechanisms that repress the expression of these genes in leaf tissue are not well un...
ORGANISM(S): Arabidopsis thaliana 
2009-02-07 | E-GEOD-11505 | biostudies-arrayexpress
Transcriptomicsfly brm knockdown RNA-seq
Drosophila PBAP complex, a form of SWI/SNF class of complexes, played a important role in metamorphosis. We conducted next-generation sequencing (NGS) to analyse the expression profile in both control and Brm knockdown fly larvae.
ORGANISM(S): Drosophila melanogaster 
2014-05-08 | E-MTAB-1966 | biostudies-arrayexpress
Genomicsfly brm knockdown MNase-seq
Drosophila PBAP complex, a form of SWI/SNF class of complexes, played a important role in metamorphosis. We conducted MNase digestion followed by next-generation sequencing (NGS) to analyse the nucleosome profile in both control and Brm knockdown fly larvae.
ORGANISM(S): Drosophila melanogaster 
2014-05-08 | E-MTAB-1967 | biostudies-arrayexpress
GenomicsGenome-wide profiling of trimethylated histone H3 lysine 27 (H3K27me3) in wide-type, brm, clf, and brm clf mutant seedlings
By using ChIP-seq, we found that loss of BRM activity in developing seedlings leads to ectopic and increased H3K27me3 deposition at several hundred genes, indicating the critical role of BRM in preventing the inappropriate deposition of this histone mark. Removal of CLF in brm mutant could partciall...
ORGANISM(S): Arabidopsis thaliana 
2015-03-09 | E-GEOD-53620 | biostudies-arrayexpress
TranscriptomicsThe distribution of Brahma in the genome of Drosophila melanogaster S2 cells and the roles of Brahma in transcription and pre-mRNA processing
We have carried out ChIP-seq to study the distribution of Brahma in the genome of S2 cells and to identify the Brahma-bound genes. We have also knocked down Brahma by RNA interference and we have carried out RNA-seq to determine the changes induced by Brahma depletion in the transcriptome of S2 cell...
ORGANISM(S): Drosophila melanogaster 
2018-05-11 | GSE95236 | GEO
GenomicsBrahma kund, Jharkhand
Brahma kund, Jharkhand Metagenomic assembly
PRJNA902918 | ENA
TranscriptomicsTranscription profiling of Arabidopsis brm-101 and syd-2 mutants 10 day old seedlings
Global analysis of gene expression in 10 day old brm-101 and syd-2 mutant seedlings compared to wild type Landsberg erecta seedlings. Experiment Overall Design: 3 genotypes (2 mutant, 1 wild type), 2 replicates each
ORGANISM(S): Arabidopsis thaliana 
2008-06-14 | E-GEOD-5806 | biostudies-arrayexpress
UnknownMethylation patterns of Brahma during spermatogenesis and oogenesis: potential implications.
Not available
S-EPMC2995817 | biostudies-literature
UnknownSWI/SNF complexes containing Brahma or Brahma-related gene 1 play distinct roles in smooth muscle development.
Not available
S-EPMC3133369 | biostudies-literature
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