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TranscriptomicsTranscriptomic comparison of fructose and lipid grown cultures of Ralstonia eutropha H16
Whole genome gene expression analysis was examined with Ralstonia eutropha strain H16 cultures grown in PHB production medium (recipe per Peoples and Sinskey, 1989) containing fructose or trioleate as the main carbon source. The goal of this analysis was to determine the identity of the triacylglyc...
ORGANISM(S): Cupriavidus necator 
2010-08-26 | E-GEOD-21145 | biostudies-arrayexpress
TranscriptomicsTranscription profile of B cells isolated from peripheral lymph nodes of wild-type vs CCR7-/- mice
We investigated the transcriptional profile of B cells isolated from peripheral lymph nodes of CCR7-/-C57BL/6 and C57BL/6 mice respectively. B cells were sorted as follows: CD19+, CD3-, CD11c-, CD11b-, NK1.1-, GR-1-. Very few genes were differentially regulated in CCR7-/- B cells, however the expres...
ORGANISM(S): Mus musculus 
2011-11-21 | E-GEOD-27885 | biostudies-arrayexpress
TranscriptomicsEffect of LAP2alpha knockout in primary mouse myoblasts
To identify genes and molecular pathways directly or indirectly affected by the loss of LAP2? in skeletal muscle, gene expression profiles of primary Lap2?+/+ (n=3) and Lap2?-/- (n=3) neonatal

myoblasts were compared.
ORGANISM(S): Mus musculus 
2010-05-26 | E-MEXP-2200 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Ralsonia eutropha H16 wild type and glucose-utilizing mutant G+1 cultivated in medium with fructose or glucose
In order to identify genes which contribute on the uptake of glucose into cells of the mutant R. eutropha G+1, a genome wide transcription analyses was done. Transcripts of strain H16 and the glucose-utilizing mutant R. eutropha G+1, cultivated in mineral salts medium supplemented with either fructo...
ORGANISM(S): Ralstonia eutropha H16 
2011-04-01 | E-MEXP-2662 | biostudies-arrayexpress
TranscriptomicsDifferential gene expression in Roseburia inulinivorans grown on inulin and starch
Roseburia inulinivorans is a recently identified motile representative of the Firmicutes that contributes to butyrate formation from a variety of dietary polysaccharide substrates in the human large intestine. Microarray analysis was used here to investigate substrate-driven gene expression changes ...
ORGANISM(S): Roseburia inulinivorans DSM 16841 
2010-07-24 | E-GEOD-22245 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human ollicular lymphoma patients treated with R-CHOP
We used gene expression profiling and pathway impact analyses to search signaling pathways, which mediate crosstalk between lymphoma cells and tumor-infiltrating inflammatory cells and contribute to the outcome of follicular lymphoma (FL) patients. 24 FL patients treated with rituximab and CHOP (cyc...
ORGANISM(S): Homo sapiens 
2009-08-15 | E-MEXP-2305 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of rat tail tendon tissue at three different developmental stages
This microarray study compared the gene expression profile of rat tail tendon tissue in three different developmental stages: embryonic day 21, postnatal 3 weeks and postnatal 6 weeks.



Key words: rat tail tendon, tissue development, embryonic and postnatal
ORGANISM(S): Rattus norvegicus 
2011-04-06 | E-MEXP-2672 | biostudies-arrayexpress
TranscriptomicsTime series analysis of glucose-lactose diauxie: involvement of stringent response
Guanosine 3 ,5 -bispyrophosphate (ppGpp), also known as ‘‘magic spot,’’ has been shown to bind prokaryotic RNA polymerase to down-regulate ribosome production and increase transcription of amino acid biosynthesis genes during the stringent response to amino acid starvation. Because many environmenta...
ORGANISM(S): Escherichia coli 
2007-03-17 | E-GEOD-7265 | biostudies-arrayexpress
MetabolomicsIntegrated Exposomics/Metabolomics for Rapid Exposure and Effect Analyses

The totality of environmental exposures and lifestyle factors, commonly referred to as the exposome, are poorly understood. Measuring the myriad of chemicals that humans are exposed to is immensely challenging and identifying disrupted metabolic pathways is even more complex. Here, we present a n...

2023-10-26 | MTBLS4556 | MetaboLights
TranscriptomicsDetecting novel genes with sparse arrays
Species-specific genes play an important role in defining the phenotype of an organism. However, current gene prediction methods can only efficiently find genes that share features such as sequence similarity or general sequence characteristics with previously known genes. Novel sequencing methods a...
ORGANISM(S): Hypocrea jecorina 
2010-08-12 | E-GEOD-12960 | biostudies-arrayexpress
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